Wall clock time and date at job start Wed Apr 1 2020 07:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38047 * 126.29069 * 2 1 4 4 C 1.47428 * 126.41256 * 0.02562 * 3 2 1 5 5 O 1.21604 * 120.00432 * 40.39375 * 4 3 2 6 6 N 1.34780 * 119.99826 * 220.38858 * 4 3 2 7 7 C 1.46923 * 120.62923 * 185.35292 * 6 4 3 8 8 C 1.52766 * 109.00720 * 233.58309 * 7 6 4 9 9 C 1.53033 * 109.38561 * 305.59036 * 8 7 6 10 10 O 1.42902 * 109.46211 * 301.21986 * 9 8 7 11 11 C 1.52992 * 109.46187 * 181.25963 * 9 8 7 12 12 C 1.53787 * 113.61649 * 159.06995 * 11 9 8 13 13 C 1.53957 * 87.02119 * 220.04852 * 12 11 9 14 14 C 1.53781 * 113.61625 * 61.45985 * 11 9 8 15 15 C 1.53037 * 109.53862 * 61.23610 * 9 8 7 16 16 C 1.46920 * 120.63010 * 5.63200 * 6 4 3 17 17 C 1.41289 * 107.17121 * 179.97438 * 3 2 1 18 18 N 1.30451 * 108.02201 * 359.97438 * 17 3 2 19 19 N 1.34259 * 126.29019 * 179.97438 * 2 1 3 20 20 C 1.46496 * 125.75655 * 359.74590 * 19 2 1 21 21 C 1.50706 * 109.46801 * 90.00391 * 20 19 2 22 22 H 1.07998 * 120.00175 * 359.97438 * 21 20 19 23 23 C 1.37877 * 119.99732 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99918 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00168 * 0.02562 * 23 21 20 26 26 H 1.48507 * 109.47071 * 89.99595 * 25 23 21 27 27 H 1.48498 * 109.47311 * 209.99850 * 25 23 21 28 28 H 1.48499 * 109.47073 * 330.00146 * 25 23 21 29 29 H 1.09000 * 109.46608 * 269.99352 * 1 2 3 30 30 H 1.08998 * 109.47517 * 29.98878 * 1 2 3 31 31 H 1.09000 * 109.47242 * 149.99808 * 1 2 3 32 32 H 1.09002 * 109.58987 * 353.41641 * 7 6 4 33 33 H 1.08997 * 109.58678 * 113.84657 * 7 6 4 34 34 H 1.08997 * 109.56044 * 185.55160 * 8 7 6 35 35 H 1.09001 * 109.38264 * 65.51520 * 8 7 6 36 36 H 0.96705 * 113.99893 * 60.05956 * 10 9 8 37 37 H 1.09004 * 112.85058 * 290.26459 * 11 9 8 38 38 H 1.09000 * 113.60826 * 334.56543 * 12 11 9 39 39 H 1.08997 * 113.61447 * 105.46850 * 12 11 9 40 40 H 1.08996 * 113.53406 * 270.81179 * 13 12 11 41 41 H 1.09000 * 113.66824 * 139.92988 * 13 12 11 42 42 H 1.08991 * 113.61594 * 254.53240 * 14 11 9 43 43 H 1.09003 * 113.61242 * 25.43594 * 14 11 9 44 44 H 1.09005 * 109.50462 * 178.68288 * 15 9 8 45 45 H 1.08998 * 109.52682 * 58.60645 * 15 9 8 46 46 H 1.08994 * 109.58886 * 246.15289 * 16 6 4 47 47 H 1.09005 * 109.58804 * 6.58305 * 16 6 4 48 48 H 1.07998 * 125.98780 * 180.02562 * 17 3 2 49 49 H 1.08991 * 109.47212 * 210.00236 * 20 19 2 50 50 H 1.09006 * 109.47119 * 330.00766 * 20 19 2 51 51 H 0.96997 * 119.99911 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.9395 2.8623 0.6834 6 7 2.5340 3.4282 -0.7558 7 6 2.1854 4.8534 -0.6777 8 6 1.8834 5.3694 -2.0835 9 6 3.0672 5.0610 -3.0030 10 8 4.2464 5.6800 -2.4849 11 6 2.7799 5.6050 -4.4038 12 6 4.0439 5.8157 -5.2541 13 6 3.3907 7.1156 -5.7582 14 6 2.5899 7.1304 -4.4453 15 6 3.2769 3.5469 -3.0771 16 6 3.5985 3.0109 -1.6784 17 6 3.6591 0.6499 0.0006 18 7 3.6341 -0.6544 0.0015 19 7 2.3017 -1.0822 0.0005 20 6 1.8501 -2.4758 0.0064 21 6 1.6903 -2.9580 -1.4125 22 1 1.9034 -2.2928 -2.2362 23 6 1.2721 -4.2485 -1.6590 24 7 1.1322 -4.6692 -2.8971 25 14 0.9029 -5.3989 -0.2343 26 1 -0.5270 -5.2726 0.1462 27 1 1.1847 -6.7986 -0.6425 28 1 1.7574 -5.0400 0.9259 29 1 -0.3632 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5136 31 1 -0.3634 -0.8900 -0.5139 32 1 1.3058 4.9804 -0.0466 33 1 3.0222 5.4118 -0.2585 34 1 1.7201 6.4466 -2.0496 35 1 0.9887 4.8775 -2.4650 36 1 4.4898 5.3819 -1.5977 37 1 1.9940 5.0529 -4.9193 38 1 4.9449 5.9805 -4.6633 39 1 4.1777 5.0634 -6.0313 40 1 2.7725 6.9765 -6.6450 41 1 4.0885 7.9475 -5.8535 42 1 1.5518 7.4379 -4.5705 43 1 3.0928 7.6553 -3.6331 44 1 4.1053 3.3267 -3.7504 45 1 2.3695 3.0713 -3.4492 46 1 4.5529 3.4160 -1.3425 47 1 3.6510 1.9225 -1.7074 48 1 4.5449 1.2677 0.0012 49 1 2.5865 -3.0941 0.5195 50 1 0.8932 -2.5455 0.5238 51 1 0.8376 -5.5769 -3.0706 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884988079.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:23:36 Heat of formation + Delta-G solvation = -14.445195 kcal Electronic energy + Delta-G solvation = -31674.424762 eV Core-core repulsion = 27574.951591 eV Total energy + Delta-G solvation = -4099.473171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.48978 -41.44345 -39.94802 -38.09301 -36.04619 -35.71211 -34.04618 -33.12865 -32.53186 -32.18188 -29.71311 -28.51136 -27.57000 -26.53720 -25.13189 -24.49446 -24.03674 -22.82582 -21.57615 -20.80972 -20.27343 -19.67001 -19.28216 -18.57147 -17.62880 -16.96062 -16.80528 -16.61827 -16.51713 -16.12256 -15.93931 -15.72348 -15.63889 -15.16715 -14.89308 -14.71106 -14.48447 -14.03405 -13.90124 -13.81162 -13.60415 -13.44376 -13.31838 -13.18403 -13.14727 -13.04267 -12.94830 -12.69238 -12.59653 -12.52900 -12.19435 -12.15061 -12.12005 -11.86075 -11.81678 -11.32734 -11.25203 -10.92490 -10.89652 -10.77602 -10.54057 -10.22962 -9.70817 -9.37412 -8.43677 -6.55269 0.71439 1.31474 1.33558 1.34195 1.44313 1.60609 1.96134 2.23830 2.32019 2.88738 3.29544 3.50051 3.59079 3.67836 3.72760 3.77852 3.92753 3.94804 4.03960 4.08647 4.12203 4.19988 4.23872 4.34239 4.35400 4.44976 4.49335 4.60244 4.61362 4.73212 4.82834 4.83847 4.86867 4.89814 4.91347 4.96487 5.04441 5.05562 5.08690 5.11261 5.14044 5.17283 5.19528 5.26220 5.45344 5.55247 5.66814 5.73337 5.82796 6.20466 6.35723 6.47728 6.77120 6.84842 7.08752 7.21868 8.72485 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015942 B = 0.002606 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.960042 B =10740.929355 C =11560.427289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.139 3.861 3 C -0.324 4.324 4 C 0.607 3.393 5 O -0.579 6.579 6 N -0.603 5.603 7 C 0.108 3.892 8 C -0.149 4.149 9 C 0.157 3.843 10 O -0.556 6.556 11 C -0.105 4.105 12 C -0.129 4.129 13 C -0.143 4.143 14 C -0.125 4.125 15 C -0.155 4.155 16 C 0.098 3.902 17 C 0.080 3.920 18 N -0.330 5.330 19 N -0.336 5.336 20 C 0.234 3.766 21 C -0.551 4.551 22 H 0.029 0.971 23 C 0.025 3.975 24 N -0.934 5.934 25 Si 0.945 3.055 26 H -0.253 1.253 27 H -0.278 1.278 28 H -0.244 1.244 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.382 0.618 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.102 0.898 47 H 0.083 0.917 48 H 0.220 0.780 49 H 0.055 0.945 50 H 0.069 0.931 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.143 22.999 1.049 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.004 3.996 3 C -0.339 4.339 4 C 0.397 3.603 5 O -0.460 6.460 6 N -0.335 5.335 7 C -0.013 4.013 8 C -0.188 4.188 9 C 0.116 3.884 10 O -0.364 6.364 11 C -0.123 4.123 12 C -0.166 4.166 13 C -0.180 4.180 14 C -0.163 4.163 15 C -0.194 4.194 16 C -0.024 4.024 17 C -0.107 4.107 18 N -0.150 5.150 19 N -0.114 5.114 20 C 0.114 3.886 21 C -0.589 4.589 22 H 0.048 0.952 23 C -0.175 4.175 24 N -0.572 5.572 25 Si 0.766 3.234 26 H -0.177 1.177 27 H -0.203 1.203 28 H -0.168 1.168 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.232 0.768 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.120 0.880 47 H 0.101 0.899 48 H 0.236 0.764 49 H 0.073 0.927 50 H 0.086 0.914 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.273 22.089 0.716 22.510 hybrid contribution -0.707 -0.736 0.362 1.083 sum 3.566 21.353 1.078 21.676 Atomic orbital electron populations 1.20508 0.85875 1.03875 1.04370 1.21862 0.95824 0.86573 0.95319 1.19887 0.93524 0.93014 1.27475 1.17255 0.80874 0.83857 0.78300 1.90696 1.29619 1.81030 1.44609 1.47925 1.37609 1.07273 1.40742 1.21618 1.02643 0.79285 0.97761 1.22404 0.98812 1.02765 0.94781 1.20769 0.84562 0.89864 0.93222 1.86491 1.44278 1.68512 1.37169 1.22601 0.99149 0.97150 0.93390 1.22842 0.97600 0.97621 0.98566 1.22845 0.99571 0.98106 0.97515 1.22828 1.00347 0.94941 0.98162 1.22518 1.03041 0.96701 0.97124 1.22058 0.90357 1.01584 0.88405 1.24389 0.97336 0.91417 0.97549 1.77097 0.98063 1.14202 1.25640 1.48690 1.03367 1.07180 1.52132 1.19884 0.96668 0.74565 0.97485 1.21170 1.48025 0.98785 0.90897 0.95226 1.25763 0.93692 0.99149 0.98899 1.70013 1.46583 1.18960 1.21605 0.85756 0.80422 0.77980 0.79205 1.17705 1.20284 1.16762 0.88328 0.89661 0.90650 0.90109 0.88812 0.88539 0.92005 0.76838 0.88815 0.89443 0.92215 0.90128 0.91270 0.91440 0.89642 0.89323 0.92342 0.88044 0.89894 0.76393 0.92703 0.91352 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.01 9.36 71.24 0.67 -2.34 16 2 C 0.14 5.42 7.00 42.14 0.30 5.71 16 3 C -0.32 -11.17 5.19 -20.15 -0.10 -11.28 16 4 C 0.61 18.98 7.30 86.66 0.63 19.61 16 5 O -0.58 -21.18 15.86 -4.04 -0.06 -21.24 16 6 N -0.60 -13.58 2.98 -823.61 -2.45 -16.03 16 7 C 0.11 1.93 5.99 86.22 0.52 2.45 16 8 C -0.15 -2.37 4.93 30.53 0.15 -2.22 16 9 C 0.16 2.41 0.62 -10.77 -0.01 2.40 16 10 O -0.56 -7.78 10.98 -148.98 -1.64 -9.41 16 11 C -0.10 -1.62 3.04 -10.27 -0.03 -1.65 16 12 C -0.13 -2.00 7.49 31.18 0.23 -1.76 16 13 C -0.14 -1.95 8.09 31.18 0.25 -1.70 16 14 C -0.13 -1.74 6.61 31.12 0.21 -1.53 16 15 C -0.16 -2.84 5.09 30.67 0.16 -2.68 16 16 C 0.10 1.84 5.06 86.36 0.44 2.28 16 17 C 0.08 2.57 9.63 85.65 0.82 3.40 16 18 N -0.33 -13.58 12.50 -56.27 -0.70 -14.29 16 19 N -0.34 -14.63 3.56 -336.70 -1.20 -15.82 16 20 C 0.23 10.72 4.85 85.64 0.42 11.13 16 21 C -0.55 -30.44 9.94 25.60 0.25 -30.19 16 22 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 23 C 0.03 1.39 5.47 84.65 0.46 1.85 16 24 N -0.93 -55.44 13.96 21.45 0.30 -55.14 16 25 Si 0.95 39.92 27.47 68.60 1.88 41.81 16 26 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 27 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 28 H -0.24 -9.52 6.54 99.48 0.65 -8.86 16 29 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.08 2.79 7.74 -2.39 -0.02 2.77 16 31 H 0.07 2.70 7.71 -2.39 -0.02 2.68 16 32 H 0.08 1.77 7.00 -2.39 -0.02 1.75 16 33 H 0.09 1.17 7.03 -2.39 -0.02 1.15 16 34 H 0.10 1.29 7.45 -2.39 -0.02 1.27 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.38 3.67 5.85 -74.05 -0.43 3.24 16 37 H 0.09 1.52 8.14 -2.38 -0.02 1.51 16 38 H 0.09 1.48 7.02 -2.39 -0.02 1.46 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.09 1.24 7.72 -2.39 -0.02 1.22 16 44 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.10 1.25 7.02 -2.39 -0.02 1.23 16 47 H 0.08 1.97 4.80 -2.38 -0.01 1.96 16 48 H 0.22 4.90 7.38 -2.91 -0.02 4.88 16 49 H 0.06 2.50 7.20 -2.39 -0.02 2.48 16 50 H 0.07 2.82 7.06 -2.38 -0.02 2.80 16 51 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -70.57 394.36 1.95 -68.63 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.46 Total: 28.02 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 5.36 Total: -6.51 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -4.06 Total: -101.28 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -1.70 Total: -30.65 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 1.88 Total: 41.81 kcal Total: -70.57 1.95 -68.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884988079.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.182 kcal (2) G-P(sol) polarization free energy of solvation -70.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds