Wall clock time and date at job start Wed Apr 1 2020 07:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38045 * 126.28976 * 2 1 4 4 C 1.47428 * 126.41413 * 359.71186 * 3 2 1 5 5 O 1.21603 * 120.00270 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99919 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99969 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.46972 * 180.02562 * 7 6 4 9 9 C 1.53002 * 109.46944 * 180.02562 * 8 7 6 10 10 H 1.08996 * 109.84752 * 54.04897 * 9 8 7 11 11 C 1.54175 * 109.85450 * 175.00137 * 9 8 7 12 12 C 1.54999 * 104.26801 * 121.24331 * 11 9 8 13 13 C 1.53899 * 101.92255 * 19.78337 * 12 11 9 14 14 C 1.52639 * 115.55437 * 195.01080 * 13 12 11 15 15 C 1.53983 * 86.73911 * 217.58357 * 14 13 12 16 16 C 1.52649 * 115.54090 * 93.99797 * 13 12 11 17 17 O 1.43098 * 105.11304 * 324.51587 * 13 12 11 18 18 C 1.41290 * 107.17003 * 179.73433 * 3 2 1 19 19 N 1.30448 * 108.01917 * 0.02562 * 18 3 2 20 20 N 1.34259 * 126.29027 * 179.68749 * 2 1 3 21 21 C 1.46494 * 125.75336 * 0.23997 * 20 2 1 22 22 C 1.50700 * 109.47034 * 90.00525 * 21 20 2 23 23 H 1.08000 * 120.00118 * 359.97438 * 22 21 20 24 24 C 1.37874 * 120.00281 * 179.97438 * 22 21 20 25 25 N 1.31520 * 120.00059 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 120.00448 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47048 * 59.99759 * 26 24 22 28 28 H 1.48499 * 109.47441 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46695 * 299.99858 * 26 24 22 30 30 H 1.08995 * 109.47029 * 90.02469 * 1 2 3 31 31 H 1.09001 * 109.47030 * 210.02410 * 1 2 3 32 32 H 1.09002 * 109.47083 * 330.02702 * 1 2 3 33 33 H 0.97000 * 120.00146 * 0.02562 * 6 4 3 34 34 H 1.09000 * 109.47456 * 299.99853 * 7 6 4 35 35 H 1.08993 * 109.47342 * 60.00310 * 7 6 4 36 36 H 1.09002 * 109.47090 * 299.99846 * 8 7 6 37 37 H 1.09001 * 109.46999 * 60.00086 * 8 7 6 38 38 H 1.09006 * 110.46718 * 239.93669 * 11 9 8 39 39 H 1.08999 * 110.47272 * 2.41217 * 11 9 8 40 40 H 1.08998 * 110.94406 * 137.94713 * 12 11 9 41 41 H 1.09002 * 110.93634 * 261.63132 * 12 11 9 42 42 H 1.09000 * 113.66973 * 332.04946 * 14 13 12 43 43 H 1.08997 * 113.66639 * 103.12106 * 14 13 12 44 44 H 1.09001 * 113.58275 * 269.98714 * 15 14 13 45 45 H 1.08996 * 113.58109 * 139.18569 * 15 14 13 46 46 H 1.08997 * 113.66966 * 256.89417 * 16 13 12 47 47 H 1.09006 * 113.66939 * 27.96812 * 16 13 12 48 48 H 1.07998 * 125.98994 * 179.97438 * 18 3 2 49 49 H 1.09003 * 109.46965 * 209.99756 * 21 20 2 50 50 H 1.09000 * 109.47680 * 330.00516 * 21 20 2 51 51 H 0.96997 * 120.00149 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0060 5 8 0.6996 2.7878 -0.0111 6 7 2.7999 3.5107 -0.0047 7 6 2.3643 4.9094 -0.0100 8 6 3.5900 5.8252 -0.0079 9 6 3.1351 7.2861 -0.0129 10 1 2.4476 7.4624 0.8143 11 6 4.3583 8.2158 0.1155 12 6 4.3031 9.0977 -1.1579 13 6 2.8337 8.9432 -1.5882 14 6 2.5128 9.3965 -3.0100 15 6 1.1808 9.9252 -2.4469 16 6 1.8818 10.0226 -1.0793 17 8 2.4895 7.5929 -1.2626 18 6 3.6591 0.6499 0.0063 19 7 3.6340 -0.6543 0.0092 20 7 2.3017 -1.0822 0.0059 21 6 1.8501 -2.4757 0.0085 22 6 1.7002 -2.9579 -1.4114 23 1 1.9190 -2.2926 -2.2335 24 6 1.2836 -4.2483 -1.6610 25 7 1.0177 -5.0587 -0.6599 26 14 1.0971 -4.8457 -3.4211 27 1 2.4051 -4.7499 -4.1176 28 1 0.6406 -6.2588 -3.4185 29 1 0.0978 -4.0035 -4.1263 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 3.7461 3.2974 -0.0002 34 1 1.7694 5.1014 -0.9030 35 1 1.7621 5.1059 0.8769 36 1 4.1853 5.6335 0.8848 37 1 4.1919 5.6287 -0.8952 38 1 4.2758 8.8327 1.0104 39 1 5.2792 7.6332 0.1387 40 1 4.5330 10.1369 -0.9224 41 1 4.9761 8.7158 -1.9256 42 1 3.1740 10.1805 -3.3791 43 1 2.3940 8.5739 -3.7152 44 1 0.3748 9.1918 -2.4724 45 1 0.8873 10.8918 -2.8562 46 1 1.2599 9.6995 -0.2446 47 1 2.3646 10.9838 -0.9025 48 1 4.5449 1.2677 0.0075 49 1 2.5830 -3.0942 0.5267 50 1 0.8897 -2.5456 0.5192 51 1 0.7250 -5.9666 -0.8354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886063350.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:31:02 Heat of formation + Delta-G solvation = -5.801303 kcal Electronic energy + Delta-G solvation = -29784.362663 eV Core-core repulsion = 25685.264320 eV Total energy + Delta-G solvation = -4099.098343 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 5.57 seconds Orbital eigenvalues (eV) -40.96439 -40.72338 -38.76308 -37.07179 -34.89902 -33.86518 -32.70791 -32.11003 -31.41343 -30.86592 -27.81729 -26.84431 -26.43166 -26.01554 -23.86877 -23.21522 -22.27074 -21.66828 -21.44409 -19.75204 -19.60319 -18.93421 -17.08988 -16.78436 -16.70374 -16.21905 -15.75629 -15.53630 -15.42530 -15.05193 -14.92826 -14.49286 -14.29191 -13.98797 -13.81978 -13.26971 -13.23174 -13.09545 -12.97603 -12.69964 -12.53605 -12.39821 -12.22871 -12.14124 -12.06152 -11.75589 -11.50923 -11.45798 -11.43603 -11.34640 -11.11194 -11.01724 -10.85178 -10.81781 -10.48559 -10.35100 -10.14403 -9.93139 -9.83078 -9.33057 -8.87009 -8.68725 -8.55506 -7.86656 -6.31541 -4.39314 2.24634 2.83580 3.21082 3.21753 3.25454 3.27101 3.31206 3.60501 3.98903 4.03469 4.13911 4.26145 4.31001 4.41501 4.49141 4.54962 4.69348 4.84993 4.88954 4.97644 5.02834 5.10947 5.16836 5.24159 5.31105 5.35257 5.36664 5.40392 5.42619 5.50867 5.54889 5.60744 5.68114 5.68901 5.78971 5.82599 5.91481 5.93055 5.99442 6.06724 6.17095 6.46328 6.59830 6.69608 6.72552 6.83254 6.93163 7.19380 7.58307 7.79314 7.80116 7.84179 8.41370 8.65392 8.69739 9.27389 10.76588 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019581 B = 0.001758 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.628380 B =15922.562977 C =16376.135479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.165 3.835 3 C -0.332 4.332 4 C 0.603 3.397 5 O -0.556 6.556 6 N -0.736 5.736 7 C 0.127 3.873 8 C -0.130 4.130 9 C 0.082 3.918 10 H 0.073 0.927 11 C -0.150 4.150 12 C -0.139 4.139 13 C 0.082 3.918 14 C -0.129 4.129 15 C -0.137 4.137 16 C -0.156 4.156 17 O -0.341 6.341 18 C 0.057 3.943 19 N -0.296 5.296 20 N -0.314 5.314 21 C 0.251 3.749 22 C -0.540 4.540 23 H 0.065 0.935 24 C 0.067 3.933 25 N -0.890 5.890 26 Si 0.908 3.092 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.273 1.273 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.396 0.604 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.175 0.825 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.835 30.097 1.590 30.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.027 3.973 3 C -0.348 4.348 4 C 0.393 3.607 5 O -0.435 6.435 6 N -0.388 5.388 7 C 0.003 3.997 8 C -0.168 4.168 9 C 0.024 3.976 10 H 0.091 0.909 11 C -0.188 4.188 12 C -0.177 4.177 13 C 0.042 3.958 14 C -0.167 4.167 15 C -0.174 4.174 16 C -0.194 4.194 17 O -0.260 6.260 18 C -0.130 4.130 19 N -0.116 5.116 20 N -0.091 5.091 21 C 0.134 3.866 22 C -0.578 4.578 23 H 0.083 0.917 24 C -0.137 4.137 25 N -0.527 5.527 26 Si 0.735 3.265 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.198 1.198 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.230 0.770 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.106 0.894 48 H 0.192 0.808 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.467 28.679 1.535 29.236 hybrid contribution 0.200 0.258 -0.781 0.847 sum 5.667 28.938 0.753 29.497 Atomic orbital electron populations 1.20566 0.86831 1.03728 1.03921 1.21481 0.94963 0.86545 0.94277 1.19697 0.93120 0.92576 1.29389 1.17302 0.85031 0.83899 0.74480 1.90692 1.16746 1.84500 1.51596 1.45717 1.09672 1.05613 1.77839 1.21186 0.96110 0.79821 1.02581 1.22020 0.98244 0.93093 1.03446 1.22720 0.93359 0.94220 0.87304 0.90941 1.22995 0.98932 0.98141 0.98733 1.22905 0.96618 1.00572 0.97617 1.22637 0.92571 0.83750 0.96859 1.22877 0.97643 1.00917 0.95231 1.22857 0.97070 1.01458 0.96031 1.23299 0.98859 0.98855 0.98342 1.88749 1.71783 1.26741 1.38768 1.23706 0.96323 0.92616 1.00366 1.77124 0.98652 1.12271 1.23588 1.49351 1.02469 1.08277 1.49019 1.19843 0.96399 0.70942 0.99415 1.21211 1.47486 0.98104 0.91019 0.91725 1.24923 0.94450 0.96005 0.98287 1.69905 1.44469 1.07245 1.31117 0.86377 0.78877 0.77735 0.83514 1.19917 1.20880 1.19838 0.89860 0.90908 0.88838 0.76977 0.91033 0.91939 0.89990 0.90360 0.90559 0.90156 0.90229 0.90309 0.88915 0.90296 0.89666 0.91344 0.90783 0.89375 0.80820 0.92530 0.92556 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.73 9.56 36.01 0.34 -1.39 16 2 C 0.16 3.44 7.01 -81.60 -0.57 2.87 16 3 C -0.33 -6.25 6.13 -105.07 -0.64 -6.89 16 4 C 0.60 10.45 7.81 -12.52 -0.10 10.35 16 5 O -0.56 -11.15 14.84 5.28 0.08 -11.07 16 6 N -0.74 -9.43 5.55 -61.38 -0.34 -9.77 16 7 C 0.13 1.44 5.59 -4.04 -0.02 1.42 16 8 C -0.13 -1.02 4.81 -26.73 -0.13 -1.15 16 9 C 0.08 0.64 3.43 -26.12 -0.09 0.55 16 10 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 11 C -0.15 -0.86 6.65 -25.06 -0.17 -1.03 16 12 C -0.14 -0.82 6.48 -25.21 -0.16 -0.98 16 13 C 0.08 0.62 1.12 -90.53 -0.10 0.52 16 14 C -0.13 -0.89 7.64 -26.40 -0.20 -1.09 16 15 C -0.14 -0.93 8.09 -25.72 -0.21 -1.14 16 16 C -0.16 -1.02 7.63 -26.40 -0.20 -1.22 16 17 O -0.34 -3.42 10.64 -35.23 -0.37 -3.79 16 18 C 0.06 1.01 11.50 -16.98 -0.20 0.81 16 19 N -0.30 -6.46 12.50 30.86 0.39 -6.08 16 20 N -0.31 -7.23 3.56 -57.77 -0.21 -7.44 16 21 C 0.25 6.34 5.97 -5.20 -0.03 6.31 16 22 C -0.54 -14.73 9.39 -34.44 -0.32 -15.05 16 23 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 24 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 25 N -0.89 -24.79 13.29 55.43 0.74 -24.06 16 26 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 30 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 31 H 0.07 1.32 7.04 -51.93 -0.37 0.95 16 32 H 0.09 1.68 6.51 -51.93 -0.34 1.34 16 33 H 0.40 4.00 7.43 -40.82 -0.30 3.70 16 34 H 0.07 0.97 7.90 -51.93 -0.41 0.56 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.40 7.70 -51.93 -0.40 0.00 16 40 H 0.08 0.36 7.96 -51.93 -0.41 -0.06 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.09 0.44 8.01 -51.93 -0.42 0.02 16 48 H 0.17 2.19 7.50 -52.49 -0.39 1.79 16 49 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 50 H 0.06 1.41 7.01 -51.93 -0.36 1.05 16 51 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 414.54 15.07 6.25 6.25 Total: -1.00 -32.28 414.54 -9.84 -42.12 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -8.45 Total: 3.21 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -2.90 Total: -5.40 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.58 Total: -47.34 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.30 Total: -14.86 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.28 -9.84 -42.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886063350.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.322 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.57 seconds