Wall clock time and date at job start Wed Apr 1 2020 07:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38048 * 126.28973 * 2 1 4 4 C 1.47433 * 126.41287 * 0.02562 * 3 2 1 5 5 O 1.21603 * 120.00250 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99499 * 180.02562 * 4 3 2 7 7 C 1.47024 * 125.64959 * 359.68658 * 6 4 3 8 8 C 1.54318 * 107.27598 * 180.96987 * 7 6 4 9 9 C 1.55159 * 102.86093 * 22.53016 * 8 7 6 10 10 H 1.09003 * 111.00682 * 82.37931 * 9 8 7 11 11 C 1.53004 * 111.03370 * 206.21444 * 9 8 7 12 12 C 1.53174 * 109.54313 * 293.22326 * 11 9 8 13 13 C 1.53101 * 109.16299 * 183.15678 * 12 11 9 14 14 O 1.42901 * 109.41418 * 57.61016 * 13 12 11 15 15 C 1.42905 * 114.09673 * 298.83918 * 14 13 12 16 16 C 1.53095 * 109.41353 * 61.16099 * 15 14 13 17 17 C 1.47424 * 125.64731 * 180.02562 * 6 4 3 18 18 C 1.41288 * 107.17058 * 180.02562 * 3 2 1 19 19 N 1.30453 * 108.01984 * 0.02562 * 18 3 2 20 20 N 1.34251 * 126.29069 * 180.02562 * 2 1 3 21 21 C 1.46506 * 125.75680 * 359.96113 * 20 2 1 22 22 C 1.50695 * 109.47029 * 270.01953 * 21 20 2 23 23 H 1.07995 * 120.00275 * 359.97438 * 22 21 20 24 24 C 1.37875 * 119.99661 * 179.97438 * 22 21 20 25 25 N 1.31513 * 120.00424 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99701 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47356 * 0.02562 * 26 24 22 28 28 H 1.48510 * 109.46932 * 120.00049 * 26 24 22 29 29 H 1.48504 * 109.47502 * 239.99837 * 26 24 22 30 30 H 1.09003 * 109.46764 * 270.02505 * 1 2 3 31 31 H 1.08998 * 109.46944 * 30.02134 * 1 2 3 32 32 H 1.08993 * 109.46954 * 150.02076 * 1 2 3 33 33 H 1.08996 * 109.88479 * 300.51510 * 7 6 4 34 34 H 1.09002 * 109.87944 * 61.68581 * 7 6 4 35 35 H 1.09001 * 110.92687 * 264.11826 * 8 7 6 36 36 H 1.08993 * 110.74469 * 140.85732 * 8 7 6 37 37 H 1.08995 * 109.54432 * 53.49624 * 11 9 8 38 38 H 1.09004 * 109.52332 * 303.05763 * 12 11 9 39 39 H 1.08994 * 109.52527 * 63.24887 * 12 11 9 40 40 H 1.08995 * 109.47415 * 297.62378 * 13 12 11 41 41 H 1.09002 * 109.48006 * 177.59371 * 13 12 11 42 42 H 1.08996 * 109.48485 * 301.18036 * 15 14 13 43 43 H 1.09004 * 109.48113 * 181.14388 * 15 14 13 44 44 H 1.08997 * 109.52228 * 182.48002 * 16 15 14 45 45 H 1.09007 * 109.57456 * 62.32936 * 16 15 14 46 46 H 1.09011 * 110.36524 * 274.66846 * 17 6 4 47 47 H 1.08996 * 110.37056 * 36.99172 * 17 6 4 48 48 H 1.07997 * 125.99233 * 180.02562 * 18 3 2 49 49 H 1.09000 * 109.46530 * 30.01718 * 21 20 2 50 50 H 1.08997 * 109.46866 * 150.01660 * 21 20 2 51 51 H 0.96999 * 120.00543 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5204 0.0005 5 8 0.6995 2.7878 0.0006 6 7 2.7999 3.5107 -0.0001 7 6 4.2590 3.3301 0.0053 8 6 4.8947 4.7360 0.0273 9 6 3.7608 5.6187 0.6126 10 1 3.7429 5.5609 1.7009 11 6 3.8976 7.0693 0.1456 12 6 5.1636 7.6848 0.7494 13 6 5.2503 9.1578 0.3410 14 8 4.0737 9.8416 0.7768 15 6 2.8627 9.3398 0.2076 16 6 2.6801 7.8742 0.6107 17 6 2.5023 4.9546 0.0009 18 6 3.6591 0.6499 -0.0006 19 7 3.6340 -0.6543 -0.0015 20 7 2.3017 -1.0821 -0.0005 21 6 1.8501 -2.4758 -0.0003 22 6 1.6956 -2.9536 1.4205 23 1 1.9125 -2.2861 2.2413 24 6 1.2773 -4.2429 1.6726 25 7 1.0137 -5.0560 0.6731 26 14 1.0865 -4.8354 3.4338 27 1 1.4432 -3.7368 4.3671 28 1 -0.3214 -5.2459 3.6682 29 1 1.9852 -5.9945 3.6664 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8901 -0.5135 33 1 4.5601 2.7712 0.8913 34 1 4.5700 2.7988 -0.8942 35 1 5.1556 5.0611 -0.9799 36 1 5.7707 4.7535 0.6756 37 1 3.9596 7.0979 -0.9422 38 1 5.1225 7.6100 1.8361 39 1 6.0397 7.1521 0.3795 40 1 5.3322 9.2300 -0.7435 41 1 6.1269 9.6120 0.8029 42 1 2.9132 9.4144 -0.8786 43 1 2.0192 9.9253 0.5735 44 1 1.7799 7.4769 0.1417 45 1 2.5881 7.8022 1.6945 46 1 2.3431 5.3098 -1.0173 47 1 1.6271 5.1612 0.6168 48 1 4.5449 1.2677 -0.0004 49 1 0.8913 -2.5471 -0.5139 50 1 2.5846 -3.0957 -0.5143 51 1 0.7191 -5.9630 0.8504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889705053.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:25:54 Heat of formation + Delta-G solvation = -20.974904 kcal Electronic energy + Delta-G solvation = -30650.374549 eV Core-core repulsion = 26550.618229 eV Total energy + Delta-G solvation = -4099.756320 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 3.66 seconds Orbital eigenvalues (eV) -40.92477 -40.21102 -39.07402 -37.30712 -34.67939 -33.85579 -32.14128 -31.59908 -31.27144 -30.75613 -29.24541 -27.34771 -26.69737 -25.20479 -24.17267 -23.41668 -23.21364 -21.11488 -20.98888 -20.35093 -19.85275 -18.39336 -16.98611 -16.87255 -16.70124 -16.36350 -15.82574 -15.43046 -15.30664 -15.15713 -14.63866 -14.57360 -14.49903 -14.16557 -13.84365 -13.64247 -13.36726 -13.02269 -12.82698 -12.60962 -12.57106 -12.46204 -12.34133 -12.10305 -11.86565 -11.82774 -11.67340 -11.54109 -11.47838 -11.29098 -11.10136 -10.93151 -10.90684 -10.62802 -10.57936 -10.37425 -10.17863 -9.91297 -9.85488 -9.39284 -8.72058 -8.64718 -8.50508 -7.89625 -6.34214 -4.41848 2.18644 2.80969 3.05785 3.16390 3.24384 3.29143 3.43732 3.51092 3.87614 4.03558 4.21870 4.23928 4.30641 4.56442 4.57443 4.66964 4.83884 4.85557 4.93714 5.00289 5.05001 5.15056 5.15310 5.22515 5.24958 5.30206 5.33955 5.40590 5.46072 5.47250 5.54422 5.59757 5.66226 5.70589 5.72226 5.75625 5.81863 5.87653 5.89986 6.07115 6.12864 6.35110 6.50365 6.58016 6.81159 6.81649 6.90850 7.17104 7.56167 7.71292 7.76799 7.79030 8.37893 8.57900 8.64400 9.25050 10.74047 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.001960 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.839438 B =14285.239519 C =14458.798680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.165 3.835 3 C -0.329 4.329 4 C 0.619 3.381 5 O -0.555 6.555 6 N -0.621 5.621 7 C 0.097 3.903 8 C -0.128 4.128 9 C -0.096 4.096 10 H 0.086 0.914 11 C -0.076 4.076 12 C -0.150 4.150 13 C 0.060 3.940 14 O -0.385 6.385 15 C 0.060 3.940 16 C -0.155 4.155 17 C 0.117 3.883 18 C 0.045 3.955 19 N -0.297 5.297 20 N -0.313 5.313 21 C 0.251 3.749 22 C -0.539 4.539 23 H 0.065 0.935 24 C 0.067 3.933 25 N -0.889 5.889 26 Si 0.908 3.092 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.076 0.924 48 H 0.185 0.815 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.397 25.914 -2.985 27.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.028 3.972 3 C -0.344 4.344 4 C 0.412 3.588 5 O -0.435 6.435 6 N -0.356 5.356 7 C -0.027 4.027 8 C -0.166 4.166 9 C -0.115 4.115 10 H 0.105 0.895 11 C -0.095 4.095 12 C -0.188 4.188 13 C -0.017 4.017 14 O -0.304 6.304 15 C -0.016 4.016 16 C -0.192 4.192 17 C -0.006 4.006 18 C -0.141 4.141 19 N -0.117 5.117 20 N -0.090 5.090 21 C 0.133 3.867 22 C -0.577 4.577 23 H 0.084 0.916 24 C -0.137 4.137 25 N -0.527 5.527 26 Si 0.735 3.265 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.206 1.206 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.095 0.905 48 H 0.201 0.799 49 H 0.074 0.926 50 H 0.075 0.925 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.333 24.660 -2.919 25.892 hybrid contribution -0.381 -0.138 0.747 0.849 sum 6.952 24.521 -2.172 25.580 Atomic orbital electron populations 1.20566 0.86807 1.03749 1.03917 1.21459 0.94940 0.86514 0.94336 1.19591 0.93191 0.92218 1.29428 1.16988 0.84052 0.83278 0.74490 1.90693 1.16209 1.84149 1.52410 1.48122 1.06191 1.05709 1.75592 1.22307 0.80836 0.97497 1.02031 1.22746 0.97969 0.93911 1.01952 1.22423 0.94845 0.93438 1.00828 0.89544 1.21137 0.94855 0.93213 1.00299 1.22243 0.98230 0.96254 1.02063 1.22584 0.88198 0.92049 0.98848 1.87938 1.14552 1.58062 1.69845 1.22590 0.87309 0.94250 0.97474 1.22297 0.98621 0.95641 1.02686 1.22143 0.97746 0.80193 1.00525 1.24361 0.96930 0.92612 1.00247 1.77150 0.98594 1.12380 1.23599 1.49378 1.02548 1.08273 1.48826 1.19858 0.96411 0.70936 0.99460 1.21281 1.47264 0.98136 0.91012 0.91630 1.24928 0.94472 0.96004 0.98314 1.69919 1.44571 1.07154 1.31059 0.86269 0.77969 0.78834 0.83450 1.19540 1.20540 1.20558 0.89844 0.88876 0.90851 0.90804 0.90885 0.90466 0.89954 0.90666 0.90842 0.90562 0.93267 0.88965 0.93220 0.88878 0.90408 0.90760 0.91864 0.90532 0.79870 0.92569 0.92509 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.57 36.01 0.34 -1.36 16 2 C 0.16 3.44 7.01 -81.60 -0.57 2.87 16 3 C -0.33 -6.25 6.09 -105.06 -0.64 -6.89 16 4 C 0.62 10.85 7.85 -12.52 -0.10 10.76 16 5 O -0.56 -11.01 15.09 5.27 0.08 -10.93 16 6 N -0.62 -8.23 3.33 -171.80 -0.57 -8.80 16 7 C 0.10 0.96 4.97 -3.07 -0.02 0.94 16 8 C -0.13 -0.87 5.68 -24.90 -0.14 -1.01 16 9 C -0.10 -0.72 2.56 -88.48 -0.23 -0.94 16 10 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 11 C -0.08 -0.47 1.78 -90.43 -0.16 -0.63 16 12 C -0.15 -0.83 5.23 -26.59 -0.14 -0.97 16 13 C 0.06 0.36 6.84 37.21 0.25 0.62 16 14 O -0.39 -3.22 10.77 -35.23 -0.38 -3.60 16 15 C 0.06 0.40 6.84 37.21 0.25 0.65 16 16 C -0.15 -1.01 5.16 -26.59 -0.14 -1.14 16 17 C 0.12 1.22 5.38 -2.54 -0.01 1.21 16 18 C 0.04 0.80 10.45 -16.98 -0.18 0.63 16 19 N -0.30 -6.49 12.50 30.86 0.39 -6.10 16 20 N -0.31 -7.19 3.56 -57.77 -0.21 -7.40 16 21 C 0.25 6.29 5.97 -5.19 -0.03 6.26 16 22 C -0.54 -14.60 9.39 -34.44 -0.32 -14.93 16 23 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 24 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 25 N -0.89 -24.66 13.29 55.43 0.74 -23.93 16 26 Si 0.91 20.91 29.54 -169.99 -5.02 15.89 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 30 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 31 H 0.09 1.65 6.50 -51.93 -0.34 1.31 16 32 H 0.07 1.31 7.05 -51.93 -0.37 0.95 16 33 H 0.07 0.74 6.86 -51.93 -0.36 0.39 16 34 H 0.07 0.70 6.97 -51.93 -0.36 0.34 16 35 H 0.08 0.46 8.01 -51.93 -0.42 0.04 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.34 7.64 -51.93 -0.40 -0.05 16 40 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.49 7.45 -51.93 -0.39 0.11 16 45 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 46 H 0.06 0.63 8.04 -51.92 -0.42 0.21 16 47 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 48 H 0.18 2.47 4.47 -52.49 -0.23 2.24 16 49 H 0.06 1.40 7.02 -51.93 -0.36 1.03 16 50 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 51 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 399.29 15.07 6.02 6.02 Total: -1.00 -32.08 399.29 -9.13 -41.20 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.25 Total: -0.09 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.92 Total: -2.25 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.34 Total: -46.23 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.30 Total: -14.54 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.08 -9.13 -41.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889705053.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.228 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.66 seconds