Wall clock time and date at job start Wed Apr 1 2020 07:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38048 * 126.28973 * 2 1 4 4 C 1.47433 * 126.41287 * 0.02562 * 3 2 1 5 5 O 1.21603 * 120.00250 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99499 * 180.02562 * 4 3 2 7 7 C 1.47024 * 125.64959 * 359.68658 * 6 4 3 8 8 C 1.54318 * 107.27598 * 180.96987 * 7 6 4 9 9 C 1.55159 * 102.86093 * 22.53016 * 8 7 6 10 10 H 1.09003 * 111.00682 * 82.37931 * 9 8 7 11 11 C 1.53004 * 111.03370 * 206.21444 * 9 8 7 12 12 C 1.53174 * 109.54313 * 293.22326 * 11 9 8 13 13 C 1.53101 * 109.16299 * 183.15678 * 12 11 9 14 14 O 1.42901 * 109.41418 * 57.61016 * 13 12 11 15 15 C 1.42905 * 114.09673 * 298.83918 * 14 13 12 16 16 C 1.53095 * 109.41353 * 61.16099 * 15 14 13 17 17 C 1.47424 * 125.64731 * 180.02562 * 6 4 3 18 18 C 1.41288 * 107.17058 * 180.02562 * 3 2 1 19 19 N 1.30453 * 108.01984 * 0.02562 * 18 3 2 20 20 N 1.34251 * 126.29069 * 180.02562 * 2 1 3 21 21 C 1.46506 * 125.75680 * 359.96113 * 20 2 1 22 22 C 1.50695 * 109.47029 * 270.01953 * 21 20 2 23 23 H 1.07995 * 120.00275 * 359.97438 * 22 21 20 24 24 C 1.37875 * 119.99661 * 179.97438 * 22 21 20 25 25 N 1.31513 * 120.00424 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99701 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47356 * 0.02562 * 26 24 22 28 28 H 1.48510 * 109.46932 * 120.00049 * 26 24 22 29 29 H 1.48504 * 109.47502 * 239.99837 * 26 24 22 30 30 H 1.09003 * 109.46764 * 270.02505 * 1 2 3 31 31 H 1.08998 * 109.46944 * 30.02134 * 1 2 3 32 32 H 1.08993 * 109.46954 * 150.02076 * 1 2 3 33 33 H 1.08996 * 109.88479 * 300.51510 * 7 6 4 34 34 H 1.09002 * 109.87944 * 61.68581 * 7 6 4 35 35 H 1.09001 * 110.92687 * 264.11826 * 8 7 6 36 36 H 1.08993 * 110.74469 * 140.85732 * 8 7 6 37 37 H 1.08995 * 109.54432 * 53.49624 * 11 9 8 38 38 H 1.09004 * 109.52332 * 303.05763 * 12 11 9 39 39 H 1.08994 * 109.52527 * 63.24887 * 12 11 9 40 40 H 1.08995 * 109.47415 * 297.62378 * 13 12 11 41 41 H 1.09002 * 109.48006 * 177.59371 * 13 12 11 42 42 H 1.08996 * 109.48485 * 301.18036 * 15 14 13 43 43 H 1.09004 * 109.48113 * 181.14388 * 15 14 13 44 44 H 1.08997 * 109.52228 * 182.48002 * 16 15 14 45 45 H 1.09007 * 109.57456 * 62.32936 * 16 15 14 46 46 H 1.09011 * 110.36524 * 274.66846 * 17 6 4 47 47 H 1.08996 * 110.37056 * 36.99172 * 17 6 4 48 48 H 1.07997 * 125.99233 * 180.02562 * 18 3 2 49 49 H 1.09000 * 109.46530 * 30.01718 * 21 20 2 50 50 H 1.08997 * 109.46866 * 150.01660 * 21 20 2 51 51 H 0.96999 * 120.00543 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5204 0.0005 5 8 0.6995 2.7878 0.0006 6 7 2.7999 3.5107 -0.0001 7 6 4.2590 3.3301 0.0053 8 6 4.8947 4.7360 0.0273 9 6 3.7608 5.6187 0.6126 10 1 3.7429 5.5609 1.7009 11 6 3.8976 7.0693 0.1456 12 6 5.1636 7.6848 0.7494 13 6 5.2503 9.1578 0.3410 14 8 4.0737 9.8416 0.7768 15 6 2.8627 9.3398 0.2076 16 6 2.6801 7.8742 0.6107 17 6 2.5023 4.9546 0.0009 18 6 3.6591 0.6499 -0.0006 19 7 3.6340 -0.6543 -0.0015 20 7 2.3017 -1.0821 -0.0005 21 6 1.8501 -2.4758 -0.0003 22 6 1.6956 -2.9536 1.4205 23 1 1.9125 -2.2861 2.2413 24 6 1.2773 -4.2429 1.6726 25 7 1.0137 -5.0560 0.6731 26 14 1.0865 -4.8354 3.4338 27 1 1.4432 -3.7368 4.3671 28 1 -0.3214 -5.2459 3.6682 29 1 1.9852 -5.9945 3.6664 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8901 -0.5135 33 1 4.5601 2.7712 0.8913 34 1 4.5700 2.7988 -0.8942 35 1 5.1556 5.0611 -0.9799 36 1 5.7707 4.7535 0.6756 37 1 3.9596 7.0979 -0.9422 38 1 5.1225 7.6100 1.8361 39 1 6.0397 7.1521 0.3795 40 1 5.3322 9.2300 -0.7435 41 1 6.1269 9.6120 0.8029 42 1 2.9132 9.4144 -0.8786 43 1 2.0192 9.9253 0.5735 44 1 1.7799 7.4769 0.1417 45 1 2.5881 7.8022 1.6945 46 1 2.3431 5.3098 -1.0173 47 1 1.6271 5.1612 0.6168 48 1 4.5449 1.2677 -0.0004 49 1 0.8913 -2.5471 -0.5139 50 1 2.5846 -3.0957 -0.5143 51 1 0.7191 -5.9630 0.8504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889705053.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:25:52 Heat of formation + Delta-G solvation = -40.367950 kcal Electronic energy + Delta-G solvation = -30651.215495 eV Core-core repulsion = 26550.618229 eV Total energy + Delta-G solvation = -4100.597266 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.41036 -41.01535 -39.98999 -38.35621 -35.89113 -35.33729 -33.86714 -32.80066 -32.10383 -31.68067 -30.19055 -28.92936 -28.25282 -26.13050 -25.27526 -24.71717 -24.05133 -22.29444 -21.81027 -21.20237 -20.88431 -19.82121 -18.88704 -18.18463 -17.53356 -17.00638 -16.86246 -16.66196 -16.53056 -16.31926 -16.00825 -15.73313 -15.34733 -15.02627 -14.94209 -14.63019 -14.36257 -14.27089 -14.19304 -13.89839 -13.74133 -13.66353 -13.48350 -13.24723 -13.12895 -13.08752 -12.97330 -12.72357 -12.44211 -12.34844 -12.18692 -12.14710 -11.95012 -11.85182 -11.75215 -11.51489 -11.15802 -11.07220 -10.83180 -10.77887 -10.35694 -10.29552 -9.76374 -9.37969 -8.39717 -6.56015 0.63740 1.29504 1.34933 1.37164 1.48193 1.63457 2.10056 2.31002 2.47776 2.92345 3.05598 3.37960 3.60561 3.70865 3.71259 3.77337 4.00534 4.04271 4.12201 4.17779 4.24268 4.27400 4.34209 4.37863 4.42795 4.44528 4.58381 4.63081 4.65429 4.70497 4.75637 4.85460 4.86187 4.87788 4.89205 4.94570 5.00738 5.02268 5.04184 5.11944 5.14713 5.22104 5.28370 5.31275 5.45763 5.48301 5.54803 5.66149 5.72870 6.01818 6.35299 6.52877 6.53038 6.79808 7.15030 7.25666 8.68449 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.001960 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.839438 B =14285.239519 C =14458.798680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.145 3.855 3 C -0.329 4.329 4 C 0.613 3.387 5 O -0.587 6.587 6 N -0.617 5.617 7 C 0.082 3.918 8 C -0.116 4.116 9 C -0.084 4.084 10 H 0.081 0.919 11 C -0.070 4.070 12 C -0.145 4.145 13 C 0.054 3.946 14 O -0.409 6.409 15 C 0.059 3.941 16 C -0.154 4.154 17 C 0.112 3.888 18 C 0.067 3.933 19 N -0.335 5.335 20 N -0.336 5.336 21 C 0.266 3.734 22 C -0.555 4.555 23 H 0.050 0.950 24 C 0.023 3.977 25 N -0.916 5.916 26 Si 0.972 3.028 27 H -0.273 1.273 28 H -0.268 1.268 29 H -0.272 1.272 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.101 0.899 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.229 0.771 49 H 0.051 0.949 50 H 0.033 0.967 51 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.106 27.662 -2.690 29.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.009 3.991 3 C -0.344 4.344 4 C 0.405 3.595 5 O -0.469 6.469 6 N -0.349 5.349 7 C -0.040 4.040 8 C -0.153 4.153 9 C -0.103 4.103 10 H 0.099 0.901 11 C -0.089 4.089 12 C -0.183 4.183 13 C -0.022 4.022 14 O -0.329 6.329 15 C -0.018 4.018 16 C -0.192 4.192 17 C -0.010 4.010 18 C -0.119 4.119 19 N -0.155 5.155 20 N -0.113 5.113 21 C 0.148 3.852 22 C -0.593 4.593 23 H 0.069 0.931 24 C -0.178 4.178 25 N -0.554 5.554 26 Si 0.796 3.204 27 H -0.198 1.198 28 H -0.193 1.193 29 H -0.197 1.197 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.119 0.881 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.245 0.755 49 H 0.069 0.931 50 H 0.051 0.949 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.078 26.447 -2.634 28.086 hybrid contribution -0.868 -0.526 0.615 1.187 sum 8.210 25.921 -2.019 27.265 Atomic orbital electron populations 1.20539 0.85840 1.04013 1.03902 1.21948 0.95946 0.86704 0.94551 1.19895 0.93411 0.92837 1.28261 1.16838 0.84259 0.83433 0.74958 1.90668 1.17605 1.84531 1.54089 1.48157 1.07279 1.06110 1.73356 1.22613 0.78787 1.00079 1.02492 1.22760 0.97896 0.91141 1.03518 1.22330 0.93482 0.94167 1.00355 0.90085 1.21099 0.94966 0.92003 1.00816 1.22206 0.98414 0.96103 1.01530 1.22750 0.87714 0.92209 0.99554 1.87908 1.15552 1.58933 1.70481 1.22656 0.87053 0.94122 0.97959 1.22274 0.98982 0.95931 1.01994 1.22344 0.98862 0.78722 1.01084 1.25073 0.97999 0.91581 0.97252 1.77104 0.98309 1.14370 1.25685 1.49132 1.03402 1.07747 1.51057 1.19393 0.95343 0.72265 0.98214 1.21398 1.47902 0.98485 0.91485 0.93133 1.25734 0.93822 0.95924 1.02327 1.69996 1.44805 1.07616 1.32970 0.85288 0.78481 0.78180 0.78424 1.19809 1.19335 1.19727 0.89937 0.88165 0.90873 0.90621 0.90015 0.88713 0.87642 0.89716 0.91677 0.88722 0.92311 0.88138 0.92309 0.88637 0.90537 0.91848 0.90967 0.92167 0.75514 0.93140 0.94904 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.24 9.57 71.24 0.68 -2.56 16 2 C 0.14 6.15 7.01 42.15 0.30 6.45 16 3 C -0.33 -12.36 6.09 -20.15 -0.12 -12.49 16 4 C 0.61 21.12 7.85 86.67 0.68 21.80 16 5 O -0.59 -23.36 15.09 -4.04 -0.06 -23.42 16 6 N -0.62 -15.22 3.33 -815.70 -2.71 -17.93 16 7 C 0.08 1.36 4.97 86.73 0.43 1.79 16 8 C -0.12 -1.08 5.68 31.78 0.18 -0.90 16 9 C -0.08 -1.02 2.56 -9.41 -0.02 -1.04 16 10 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 11 C -0.07 -0.66 1.78 -10.67 -0.02 -0.68 16 12 C -0.14 -1.16 5.23 30.69 0.16 -1.00 16 13 C 0.05 0.52 6.84 72.02 0.49 1.01 16 14 O -0.41 -6.22 10.77 -148.98 -1.60 -7.83 16 15 C 0.06 0.68 6.84 72.01 0.49 1.18 16 16 C -0.15 -1.78 5.16 30.69 0.16 -1.62 16 17 C 0.11 2.14 5.38 86.85 0.47 2.61 16 18 C 0.07 2.32 10.45 85.65 0.89 3.22 16 19 N -0.33 -14.68 12.50 -56.28 -0.70 -15.39 16 20 N -0.34 -15.86 3.56 -336.69 -1.20 -17.06 16 21 C 0.27 13.92 5.97 85.63 0.51 14.43 16 22 C -0.55 -30.86 9.39 25.60 0.24 -30.62 16 23 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 24 C 0.02 1.27 5.46 84.65 0.46 1.73 16 25 N -0.92 -51.39 13.29 21.45 0.28 -51.10 16 26 Si 0.97 42.93 29.54 68.60 2.03 44.96 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 29 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 30 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.10 3.64 6.50 -2.39 -0.02 3.62 16 32 H 0.07 2.73 7.05 -2.39 -0.02 2.71 16 33 H 0.08 1.26 6.86 -2.39 -0.02 1.25 16 34 H 0.08 1.26 6.97 -2.39 -0.02 1.24 16 35 H 0.09 0.64 8.01 -2.39 -0.02 0.62 16 36 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.08 0.69 8.11 -2.39 -0.02 0.67 16 38 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.09 0.43 7.64 -2.39 -0.02 0.42 16 40 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.08 0.89 7.45 -2.39 -0.02 0.87 16 45 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 46 H 0.07 1.28 8.04 -2.38 -0.02 1.27 16 47 H 0.06 1.37 8.01 -2.39 -0.02 1.35 16 48 H 0.23 5.46 4.47 -2.91 -0.01 5.45 16 49 H 0.05 2.64 7.02 -2.39 -0.02 2.62 16 50 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 51 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -70.96 399.29 2.94 -68.02 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.93 Total: 16.44 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 5.98 Total: 3.31 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -4.33 Total: -101.48 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -1.66 Total: -31.25 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -70.96 2.94 -68.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889705053.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.657 kcal (2) G-P(sol) polarization free energy of solvation -70.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds