Wall clock time and date at job start Wed Apr 1 2020 07:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38053 * 126.29315 * 2 1 4 4 C 1.47422 * 126.41239 * 359.97438 * 3 2 1 5 5 O 1.21608 * 120.00350 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00096 * 179.97438 * 4 3 2 7 7 C 1.46497 * 120.00252 * 179.97438 * 6 4 3 8 8 C 1.53004 * 109.47457 * 180.02562 * 7 6 4 9 9 C 1.52998 * 110.43594 * 300.70897 * 8 7 6 10 10 C 1.54812 * 110.48236 * 63.24748 * 8 7 6 11 11 C 1.55232 * 101.98661 * 139.48249 * 10 8 7 12 12 O 1.44375 * 103.56370 * 323.11848 * 11 10 8 13 13 C 1.43744 * 106.97861 * 39.98683 * 12 11 10 14 14 H 1.09003 * 109.87604 * 92.90741 * 13 12 11 15 15 C 1.52992 * 109.88487 * 214.06124 * 13 12 11 16 16 C 1.53002 * 117.49567 * 6.57608 * 15 13 12 17 17 C 1.53002 * 117.49807 * 297.92227 * 15 13 12 18 18 C 1.41288 * 107.17172 * 180.02562 * 3 2 1 19 19 N 1.30454 * 108.02310 * 359.74163 * 18 3 2 20 20 N 1.34262 * 126.29120 * 180.02562 * 2 1 3 21 21 C 1.46497 * 125.75434 * 359.95994 * 20 2 1 22 22 C 1.50694 * 109.47115 * 89.99741 * 21 20 2 23 23 H 1.08000 * 120.00563 * 0.02562 * 22 21 20 24 24 C 1.37885 * 119.99902 * 179.97438 * 22 21 20 25 25 N 1.31518 * 119.99792 * 179.72330 * 24 22 21 26 26 Si 1.86795 * 120.00009 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47088 * 89.99795 * 26 24 22 28 28 H 1.48495 * 109.47293 * 209.99997 * 26 24 22 29 29 H 1.48507 * 109.47015 * 329.99955 * 26 24 22 30 30 H 1.08997 * 109.46737 * 269.97919 * 1 2 3 31 31 H 1.09003 * 109.46763 * 29.97262 * 1 2 3 32 32 H 1.08992 * 109.47048 * 149.97711 * 1 2 3 33 33 H 0.97005 * 119.99639 * 0.02562 * 6 4 3 34 34 H 1.09000 * 109.47739 * 300.00344 * 7 6 4 35 35 H 1.09002 * 109.47230 * 60.00410 * 7 6 4 36 36 H 1.08996 * 109.47268 * 59.29326 * 9 8 7 37 37 H 1.09001 * 109.46601 * 179.29646 * 9 8 7 38 38 H 1.09003 * 109.47041 * 299.29154 * 9 8 7 39 39 H 1.09001 * 110.91326 * 257.75343 * 10 8 7 40 40 H 1.08998 * 110.91181 * 21.36171 * 10 8 7 41 41 H 1.08995 * 110.64312 * 204.56241 * 11 10 8 42 42 H 1.09000 * 110.65300 * 81.68406 * 11 10 8 43 43 H 1.08995 * 115.55377 * 152.24537 * 15 13 12 44 44 H 1.09000 * 117.49849 * 0.02562 * 16 15 13 45 45 H 1.09001 * 117.49722 * 145.02114 * 16 15 13 46 46 H 1.08998 * 117.50033 * 214.97970 * 17 15 13 47 47 H 1.09000 * 117.49592 * 359.96726 * 17 15 13 48 48 H 1.08002 * 125.98890 * 179.97438 * 18 3 2 49 49 H 1.08998 * 109.46734 * 329.99858 * 21 20 2 50 50 H 1.09002 * 109.47081 * 209.99629 * 21 20 2 51 51 H 0.97000 * 119.99468 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1127 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0006 6 7 2.8000 3.5107 0.0001 7 6 2.3645 4.9094 -0.0010 8 6 3.5902 5.8253 -0.0007 9 6 4.4555 5.5592 1.2327 10 6 4.4158 5.6258 -1.2950 11 6 4.8179 7.0829 -1.6487 12 8 3.6543 7.8541 -1.2803 13 6 3.1587 7.3038 -0.0484 14 1 3.5872 7.8423 0.7970 15 6 1.6324 7.4018 -0.0114 16 6 0.9249 7.8872 -1.2782 17 6 1.0130 8.8002 -0.0529 18 6 3.6591 0.6499 -0.0006 19 7 3.6341 -0.6544 0.0047 20 7 2.3017 -1.0822 -0.0005 21 6 1.8501 -2.4758 -0.0003 22 6 1.6944 -2.9536 -1.4210 23 1 1.9106 -2.2861 -2.2420 24 6 1.2768 -4.2434 -1.6727 25 7 1.1357 -4.6586 -2.9126 26 14 0.9035 -5.3981 -0.2527 27 1 -0.5274 -5.2730 0.1240 28 1 1.1865 -6.7966 -0.6644 29 1 1.7547 -5.0428 0.9112 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3633 -0.8897 -0.5141 33 1 3.7463 3.2973 0.0005 34 1 1.7668 5.1033 -0.8917 35 1 1.7649 5.1040 0.8882 36 1 4.7780 4.5181 1.2326 37 1 5.3294 6.2104 1.2106 38 1 3.8755 5.7599 2.1335 39 1 5.2965 5.0126 -1.1042 40 1 3.8031 5.1894 -2.0839 41 1 5.0193 7.1777 -2.7156 42 1 5.6851 7.3944 -1.0664 43 1 1.1271 6.6452 0.5887 44 1 1.5468 8.1363 -2.1380 45 1 -0.0461 7.4501 -1.5113 46 1 0.1001 8.9636 0.5198 47 1 1.6931 9.6504 -0.1059 48 1 4.5450 1.2677 -0.0012 49 1 0.8918 -2.5470 0.5141 50 1 2.5851 -3.0958 0.5131 51 1 0.8424 -5.5661 -3.0896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889992350.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:29:11 Heat of formation + Delta-G solvation = 12.428398 kcal Electronic energy + Delta-G solvation = -30965.437556 eV Core-core repulsion = 26867.129712 eV Total energy + Delta-G solvation = -4098.307844 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 12.63 seconds Orbital eigenvalues (eV) -41.02915 -40.70184 -38.68109 -36.68097 -35.69421 -33.95262 -32.88134 -32.09617 -31.28173 -30.04747 -28.27223 -27.44899 -26.90940 -25.62249 -23.60314 -23.04767 -22.50035 -21.97692 -20.98582 -19.86870 -19.61296 -18.83622 -17.27126 -17.21969 -16.53946 -16.21401 -15.99006 -15.56472 -15.26693 -15.11469 -14.71341 -14.54370 -14.31216 -14.18355 -13.85855 -13.68161 -13.30231 -13.24855 -12.91763 -12.66778 -12.57538 -12.40760 -12.26551 -12.13333 -12.05835 -11.79042 -11.61726 -11.58619 -11.42526 -11.22994 -11.03746 -10.91740 -10.86406 -10.45893 -10.41795 -10.29846 -10.24340 -9.87948 -9.81229 -9.43699 -8.95650 -8.86695 -8.66538 -7.97713 -6.34559 -4.39434 2.12080 2.71101 3.02975 3.10566 3.16935 3.20684 3.41653 3.51468 3.60763 3.87774 4.06962 4.14215 4.20326 4.40814 4.58582 4.75498 4.76119 4.81074 4.89835 4.90815 4.97620 5.04073 5.15734 5.19129 5.27219 5.36070 5.42414 5.46505 5.48975 5.50525 5.56102 5.64227 5.66975 5.71414 5.74805 5.78211 5.86793 5.92243 5.94578 6.01492 6.07472 6.25158 6.43070 6.47726 6.58558 6.58843 6.61940 7.00274 7.16751 7.54900 7.71583 8.18305 8.26097 8.58695 8.68892 9.19275 10.77616 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021305 B = 0.002172 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.928307 B =12889.606908 C =13299.069196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.169 3.831 3 C -0.329 4.329 4 C 0.603 3.397 5 O -0.555 6.555 6 N -0.734 5.734 7 C 0.141 3.859 8 C -0.101 4.101 9 C -0.141 4.141 10 C -0.148 4.148 11 C 0.048 3.952 12 O -0.369 6.369 13 C 0.122 3.878 14 H 0.076 0.924 15 C -0.173 4.173 16 C -0.162 4.162 17 C -0.176 4.176 18 C 0.060 3.940 19 N -0.293 5.293 20 N -0.314 5.314 21 C 0.225 3.775 22 C -0.546 4.546 23 H 0.082 0.918 24 C 0.081 3.919 25 N -0.882 5.882 26 Si 0.873 3.127 27 H -0.270 1.270 28 H -0.278 1.278 29 H -0.263 1.263 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.396 0.604 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.123 0.877 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.176 0.824 49 H 0.048 0.952 50 H 0.055 0.945 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.395 24.254 7.777 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.032 3.968 3 C -0.344 4.344 4 C 0.394 3.606 5 O -0.434 6.434 6 N -0.386 5.386 7 C 0.018 3.982 8 C -0.101 4.101 9 C -0.198 4.198 10 C -0.186 4.186 11 C -0.029 4.029 12 O -0.288 6.288 13 C 0.064 3.936 14 H 0.094 0.906 15 C -0.191 4.191 16 C -0.199 4.199 17 C -0.213 4.213 18 C -0.127 4.127 19 N -0.112 5.112 20 N -0.090 5.090 21 C 0.106 3.894 22 C -0.584 4.584 23 H 0.100 0.900 24 C -0.124 4.124 25 N -0.519 5.519 26 Si 0.698 3.302 27 H -0.195 1.195 28 H -0.204 1.204 29 H -0.188 1.188 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.230 0.770 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.141 0.859 44 H 0.122 0.878 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.111 0.889 48 H 0.193 0.807 49 H 0.066 0.934 50 H 0.073 0.927 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.078 23.200 7.545 24.919 hybrid contribution 0.087 -0.358 0.621 0.722 sum 5.165 22.843 8.166 24.802 Atomic orbital electron populations 1.20645 0.86769 1.05191 1.03196 1.21476 0.94967 0.86371 0.93974 1.19686 0.93063 0.92641 1.29040 1.17262 0.85028 0.83832 0.74517 1.90697 1.16692 1.84462 1.51545 1.45773 1.09677 1.05472 1.77711 1.21450 0.94706 0.79596 1.02475 1.22149 0.96024 0.95364 0.96581 1.21894 0.99238 1.02247 0.96417 1.23337 1.00430 0.97799 0.97023 1.23548 0.88660 0.89601 1.01056 1.88872 1.43885 1.55924 1.40162 1.22164 0.92484 0.91286 0.87676 0.90616 1.22718 0.93432 0.98870 1.04032 1.22879 1.01504 1.02965 0.92572 1.22941 1.02566 0.93454 1.02374 1.23710 0.96372 0.92535 1.00113 1.77139 0.98140 1.12383 1.23560 1.48900 1.02735 1.07527 1.49850 1.20148 0.95716 0.73347 1.00204 1.21096 1.48112 0.99196 0.90018 0.90016 1.24798 0.94275 0.97421 0.95875 1.69866 1.45064 1.18257 1.18678 0.86902 0.79540 0.81040 0.82694 1.19478 1.20354 1.18792 0.90512 0.88350 0.89834 0.76970 0.90850 0.91287 0.91736 0.92124 0.91799 0.89784 0.89731 0.88921 0.92214 0.85942 0.87776 0.88977 0.88967 0.88869 0.80747 0.93425 0.92719 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.76 9.34 36.01 0.34 -1.42 16 2 C 0.17 3.34 7.01 -81.60 -0.57 2.77 16 3 C -0.33 -5.80 6.13 -105.07 -0.64 -6.45 16 4 C 0.60 9.62 7.81 -12.52 -0.10 9.52 16 5 O -0.55 -10.28 14.84 5.27 0.08 -10.20 16 6 N -0.73 -8.40 5.07 -61.38 -0.31 -8.71 16 7 C 0.14 1.42 3.15 -4.04 -0.01 1.41 16 8 C -0.10 -0.75 0.68 -152.98 -0.10 -0.86 16 9 C -0.14 -0.88 8.08 37.16 0.30 -0.58 16 10 C -0.15 -1.05 5.80 -24.59 -0.14 -1.19 16 11 C 0.05 0.33 7.72 38.34 0.30 0.63 16 12 O -0.37 -3.40 9.58 -35.23 -0.34 -3.74 16 13 C 0.12 0.99 3.45 -26.16 -0.09 0.90 16 14 H 0.08 0.57 7.69 -51.93 -0.40 0.17 16 15 C -0.17 -1.48 4.39 -90.62 -0.40 -1.88 16 16 C -0.16 -1.47 9.88 -26.70 -0.26 -1.73 16 17 C -0.18 -1.43 10.22 -26.70 -0.27 -1.70 16 18 C 0.06 1.00 11.50 -16.98 -0.20 0.80 16 19 N -0.29 -6.07 12.50 30.86 0.39 -5.69 16 20 N -0.31 -6.84 3.56 -57.78 -0.21 -7.05 16 21 C 0.22 5.19 4.85 -5.20 -0.03 5.16 16 22 C -0.55 -14.86 9.94 -34.44 -0.34 -15.21 16 23 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 24 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 25 N -0.88 -25.72 13.96 55.43 0.77 -24.94 16 26 Si 0.87 19.64 27.47 -169.99 -4.67 14.97 16 27 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.10 1.73 6.50 -51.93 -0.34 1.39 16 32 H 0.08 1.52 7.70 -51.93 -0.40 1.12 16 33 H 0.40 3.66 6.01 -40.82 -0.25 3.41 16 34 H 0.07 0.86 7.51 -51.93 -0.39 0.47 16 35 H 0.07 0.73 6.58 -51.93 -0.34 0.39 16 36 H 0.06 0.39 6.88 -51.93 -0.36 0.03 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 40 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.12 1.08 5.69 -51.93 -0.30 0.78 16 44 H 0.10 1.02 7.06 -51.93 -0.37 0.65 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.18 2.03 7.50 -52.49 -0.39 1.64 16 49 H 0.05 1.01 7.05 -51.93 -0.37 0.65 16 50 H 0.05 1.27 7.20 -51.93 -0.37 0.89 16 51 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 403.76 15.07 6.08 6.08 Total: -1.00 -32.27 403.76 -8.58 -40.85 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -8.06 Total: 6.12 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -2.32 Total: -7.71 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.64 Total: -46.39 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.26 Total: -13.93 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.67 Total: 14.97 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.27 -8.58 -40.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889992350.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.275 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.63 seconds