Wall clock time and date at job start Wed Apr 1 2020 07:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38053 * 126.29315 * 2 1 4 4 C 1.47422 * 126.41239 * 359.97438 * 3 2 1 5 5 O 1.21608 * 120.00350 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00096 * 179.97438 * 4 3 2 7 7 C 1.46497 * 120.00252 * 179.97438 * 6 4 3 8 8 C 1.53004 * 109.47457 * 180.02562 * 7 6 4 9 9 C 1.52998 * 110.43594 * 300.70897 * 8 7 6 10 10 C 1.54812 * 110.48236 * 63.24748 * 8 7 6 11 11 C 1.55232 * 101.98661 * 139.48249 * 10 8 7 12 12 O 1.44375 * 103.56370 * 323.11848 * 11 10 8 13 13 C 1.43744 * 106.97861 * 39.98683 * 12 11 10 14 14 H 1.09003 * 109.87604 * 92.90741 * 13 12 11 15 15 C 1.52992 * 109.88487 * 214.06124 * 13 12 11 16 16 C 1.53002 * 117.49567 * 6.57608 * 15 13 12 17 17 C 1.53002 * 117.49807 * 297.92227 * 15 13 12 18 18 C 1.41288 * 107.17172 * 180.02562 * 3 2 1 19 19 N 1.30454 * 108.02310 * 359.74163 * 18 3 2 20 20 N 1.34262 * 126.29120 * 180.02562 * 2 1 3 21 21 C 1.46497 * 125.75434 * 359.95994 * 20 2 1 22 22 C 1.50694 * 109.47115 * 89.99741 * 21 20 2 23 23 H 1.08000 * 120.00563 * 0.02562 * 22 21 20 24 24 C 1.37885 * 119.99902 * 179.97438 * 22 21 20 25 25 N 1.31518 * 119.99792 * 179.72330 * 24 22 21 26 26 Si 1.86795 * 120.00009 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47088 * 89.99795 * 26 24 22 28 28 H 1.48495 * 109.47293 * 209.99997 * 26 24 22 29 29 H 1.48507 * 109.47015 * 329.99955 * 26 24 22 30 30 H 1.08997 * 109.46737 * 269.97919 * 1 2 3 31 31 H 1.09003 * 109.46763 * 29.97262 * 1 2 3 32 32 H 1.08992 * 109.47048 * 149.97711 * 1 2 3 33 33 H 0.97005 * 119.99639 * 0.02562 * 6 4 3 34 34 H 1.09000 * 109.47739 * 300.00344 * 7 6 4 35 35 H 1.09002 * 109.47230 * 60.00410 * 7 6 4 36 36 H 1.08996 * 109.47268 * 59.29326 * 9 8 7 37 37 H 1.09001 * 109.46601 * 179.29646 * 9 8 7 38 38 H 1.09003 * 109.47041 * 299.29154 * 9 8 7 39 39 H 1.09001 * 110.91326 * 257.75343 * 10 8 7 40 40 H 1.08998 * 110.91181 * 21.36171 * 10 8 7 41 41 H 1.08995 * 110.64312 * 204.56241 * 11 10 8 42 42 H 1.09000 * 110.65300 * 81.68406 * 11 10 8 43 43 H 1.08995 * 115.55377 * 152.24537 * 15 13 12 44 44 H 1.09000 * 117.49849 * 0.02562 * 16 15 13 45 45 H 1.09001 * 117.49722 * 145.02114 * 16 15 13 46 46 H 1.08998 * 117.50033 * 214.97970 * 17 15 13 47 47 H 1.09000 * 117.49592 * 359.96726 * 17 15 13 48 48 H 1.08002 * 125.98890 * 179.97438 * 18 3 2 49 49 H 1.08998 * 109.46734 * 329.99858 * 21 20 2 50 50 H 1.09002 * 109.47081 * 209.99629 * 21 20 2 51 51 H 0.97000 * 119.99468 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1127 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0006 6 7 2.8000 3.5107 0.0001 7 6 2.3645 4.9094 -0.0010 8 6 3.5902 5.8253 -0.0007 9 6 4.4555 5.5592 1.2327 10 6 4.4158 5.6258 -1.2950 11 6 4.8179 7.0829 -1.6487 12 8 3.6543 7.8541 -1.2803 13 6 3.1587 7.3038 -0.0484 14 1 3.5872 7.8423 0.7970 15 6 1.6324 7.4018 -0.0114 16 6 0.9249 7.8872 -1.2782 17 6 1.0130 8.8002 -0.0529 18 6 3.6591 0.6499 -0.0006 19 7 3.6341 -0.6544 0.0047 20 7 2.3017 -1.0822 -0.0005 21 6 1.8501 -2.4758 -0.0003 22 6 1.6944 -2.9536 -1.4210 23 1 1.9106 -2.2861 -2.2420 24 6 1.2768 -4.2434 -1.6727 25 7 1.1357 -4.6586 -2.9126 26 14 0.9035 -5.3981 -0.2527 27 1 -0.5274 -5.2730 0.1240 28 1 1.1865 -6.7966 -0.6644 29 1 1.7547 -5.0428 0.9112 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3633 -0.8897 -0.5141 33 1 3.7463 3.2973 0.0005 34 1 1.7668 5.1033 -0.8917 35 1 1.7649 5.1040 0.8882 36 1 4.7780 4.5181 1.2326 37 1 5.3294 6.2104 1.2106 38 1 3.8755 5.7599 2.1335 39 1 5.2965 5.0126 -1.1042 40 1 3.8031 5.1894 -2.0839 41 1 5.0193 7.1777 -2.7156 42 1 5.6851 7.3944 -1.0664 43 1 1.1271 6.6452 0.5887 44 1 1.5468 8.1363 -2.1380 45 1 -0.0461 7.4501 -1.5113 46 1 0.1001 8.9636 0.5198 47 1 1.6931 9.6504 -0.1059 48 1 4.5450 1.2677 -0.0012 49 1 0.8918 -2.5470 0.5141 50 1 2.5851 -3.0958 0.5131 51 1 0.8424 -5.5661 -3.0896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889992350.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:29:10 Heat of formation + Delta-G solvation = -8.470599 kcal Electronic energy + Delta-G solvation = -30966.343804 eV Core-core repulsion = 26867.129712 eV Total energy + Delta-G solvation = -4099.214093 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -42.35180 -41.52391 -39.88763 -37.34853 -36.58853 -35.77186 -34.17648 -33.54097 -32.81841 -30.65828 -29.82081 -28.51510 -27.96474 -26.64163 -24.85409 -24.18902 -23.39710 -23.08346 -21.62601 -21.22001 -20.73979 -19.92518 -19.28654 -18.50520 -17.28681 -17.02865 -16.77639 -16.70056 -16.46949 -16.28687 -16.15311 -15.71125 -15.52852 -15.13461 -14.88808 -14.74945 -14.53075 -14.33590 -14.14883 -14.00712 -13.77574 -13.68294 -13.49515 -13.15519 -13.01104 -12.99723 -12.74087 -12.58092 -12.41026 -12.30869 -12.15536 -12.05130 -11.85761 -11.73621 -11.60123 -11.58547 -11.12095 -10.94313 -10.92571 -10.81689 -10.47917 -10.26068 -10.06038 -9.42475 -8.43783 -6.55908 0.66344 1.32009 1.33675 1.34926 1.44959 1.62623 2.24110 2.34756 2.55977 2.83765 2.88582 2.96406 3.42760 3.55964 3.71966 3.73807 3.77938 3.97472 4.07858 4.11426 4.13524 4.18843 4.22425 4.30193 4.39116 4.47743 4.50676 4.56585 4.65303 4.71413 4.72429 4.79292 4.81636 4.84124 4.92337 4.94420 4.99702 5.04895 5.07061 5.12669 5.14601 5.17397 5.19036 5.26785 5.35276 5.37673 5.54279 5.64248 5.83137 6.00722 6.20505 6.47285 6.63430 6.80737 7.08089 7.38227 8.72676 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021305 B = 0.002172 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.928307 B =12889.606908 C =13299.069196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.147 3.853 3 C -0.329 4.329 4 C 0.603 3.397 5 O -0.584 6.584 6 N -0.711 5.711 7 C 0.144 3.856 8 C -0.091 4.091 9 C -0.140 4.140 10 C -0.148 4.148 11 C 0.045 3.955 12 O -0.389 6.389 13 C 0.123 3.877 14 H 0.087 0.913 15 C -0.175 4.175 16 C -0.174 4.174 17 C -0.167 4.167 18 C 0.081 3.919 19 N -0.333 5.333 20 N -0.338 5.338 21 C 0.234 3.766 22 C -0.554 4.554 23 H 0.026 0.974 24 C 0.023 3.977 25 N -0.935 5.935 26 Si 0.949 3.051 27 H -0.253 1.253 28 H -0.277 1.277 29 H -0.242 1.242 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.410 0.590 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.119 0.881 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.101 0.899 47 H 0.095 0.905 48 H 0.227 0.773 49 H 0.070 0.930 50 H 0.057 0.943 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.715 25.327 10.330 28.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.011 3.989 3 C -0.344 4.344 4 C 0.392 3.608 5 O -0.466 6.466 6 N -0.363 5.363 7 C 0.021 3.979 8 C -0.091 4.091 9 C -0.197 4.197 10 C -0.185 4.185 11 C -0.031 4.031 12 O -0.309 6.309 13 C 0.065 3.935 14 H 0.105 0.895 15 C -0.193 4.193 16 C -0.211 4.211 17 C -0.204 4.204 18 C -0.106 4.106 19 N -0.152 5.152 20 N -0.115 5.115 21 C 0.114 3.886 22 C -0.592 4.592 23 H 0.044 0.956 24 C -0.178 4.178 25 N -0.573 5.573 26 Si 0.770 3.230 27 H -0.177 1.177 28 H -0.202 1.202 29 H -0.165 1.165 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.247 0.753 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.122 0.878 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.137 0.863 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.119 0.881 47 H 0.114 0.886 48 H 0.243 0.757 49 H 0.087 0.913 50 H 0.075 0.925 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.437 24.323 10.103 27.113 hybrid contribution -0.281 -0.493 -0.294 0.639 sum 6.156 23.831 9.808 26.495 Atomic orbital electron populations 1.20623 0.85859 1.04250 1.04403 1.21983 0.95965 0.86735 0.94176 1.19977 0.93345 0.93130 1.27994 1.17126 0.85104 0.83873 0.74669 1.90687 1.18054 1.84741 1.53075 1.45582 1.09779 1.05302 1.75686 1.21489 0.95942 0.78974 1.01498 1.22072 0.95025 0.94303 0.97740 1.21912 0.99430 1.02999 0.95349 1.23343 1.00780 0.98279 0.96108 1.23695 0.88518 0.89125 1.01754 1.88860 1.44837 1.56556 1.40624 1.22217 0.91937 0.91625 0.87757 0.89495 1.22772 0.94103 0.99118 1.03353 1.22830 1.01358 1.04160 0.92769 1.22980 1.02870 0.93203 1.01368 1.24492 0.97619 0.91586 0.96900 1.77085 0.97983 1.14477 1.25676 1.48752 1.03510 1.07251 1.52029 1.19880 0.96763 0.74609 0.97334 1.21191 1.48171 0.98826 0.90970 0.95607 1.25830 0.93614 0.99261 0.99047 1.70029 1.46570 1.19094 1.21595 0.85698 0.80440 0.77810 0.79052 1.17691 1.20245 1.16513 0.88205 0.88696 0.91171 0.75312 0.92731 0.91464 0.91145 0.90571 0.91786 0.87751 0.91542 0.88527 0.90450 0.86303 0.88731 0.89374 0.88056 0.88629 0.75708 0.91252 0.92504 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.29 9.34 71.24 0.67 -2.63 16 2 C 0.15 5.79 7.01 42.14 0.30 6.09 16 3 C -0.33 -11.24 6.13 -20.15 -0.12 -11.36 16 4 C 0.60 18.48 7.81 86.66 0.68 19.16 16 5 O -0.58 -21.40 14.84 -4.06 -0.06 -21.46 16 6 N -0.71 -14.80 5.07 -466.37 -2.37 -17.17 16 7 C 0.14 2.70 3.15 86.38 0.27 2.97 16 8 C -0.09 -1.15 0.68 -51.19 -0.03 -1.19 16 9 C -0.14 -1.25 8.08 71.98 0.58 -0.67 16 10 C -0.15 -1.75 5.80 31.98 0.19 -1.56 16 11 C 0.05 0.53 7.72 72.75 0.56 1.09 16 12 O -0.39 -6.60 9.58 -148.98 -1.43 -8.03 16 13 C 0.12 1.76 3.45 30.96 0.11 1.87 16 14 H 0.09 1.08 7.69 -2.39 -0.02 1.06 16 15 C -0.18 -2.87 4.39 -10.79 -0.05 -2.92 16 16 C -0.17 -3.17 9.88 30.62 0.30 -2.86 16 17 C -0.17 -2.55 10.22 30.62 0.31 -2.24 16 18 C 0.08 2.53 11.50 85.65 0.99 3.52 16 19 N -0.33 -13.58 12.50 -56.27 -0.70 -14.28 16 20 N -0.34 -14.80 3.56 -336.71 -1.20 -16.00 16 21 C 0.23 10.79 4.85 85.63 0.42 11.21 16 22 C -0.55 -31.17 9.94 25.60 0.25 -30.92 16 23 H 0.03 1.69 8.06 -2.91 -0.02 1.66 16 24 C 0.02 1.26 5.47 84.66 0.46 1.72 16 25 N -0.93 -56.34 13.96 21.45 0.30 -56.04 16 26 Si 0.95 40.16 27.47 68.60 1.88 42.04 16 27 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 28 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 29 H -0.24 -9.34 6.54 99.48 0.65 -8.69 16 30 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 31 H 0.09 3.39 6.50 -2.39 -0.02 3.38 16 32 H 0.07 2.62 7.70 -2.39 -0.02 2.60 16 33 H 0.41 6.20 6.01 -92.70 -0.56 5.64 16 34 H 0.05 1.27 7.51 -2.39 -0.02 1.25 16 35 H 0.07 1.33 6.58 -2.39 -0.02 1.32 16 36 H 0.07 0.56 6.88 -2.39 -0.02 0.54 16 37 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.10 0.82 7.86 -2.39 -0.02 0.80 16 40 H 0.07 1.05 7.87 -2.39 -0.02 1.03 16 41 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.12 2.02 5.69 -2.39 -0.01 2.00 16 44 H 0.09 1.89 7.06 -2.39 -0.02 1.88 16 45 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.23 4.29 7.50 -2.91 -0.02 4.27 16 49 H 0.07 2.87 7.05 -2.39 -0.02 2.85 16 50 H 0.06 2.58 7.20 -2.39 -0.02 2.56 16 51 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -73.85 403.76 2.63 -71.22 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.33 Total: 28.44 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 5.87 Total: -8.72 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -3.97 Total: -103.49 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -1.49 Total: -29.49 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 1.88 Total: 42.04 kcal Total: -73.85 2.63 -71.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889992350.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.750 kcal (2) G-P(sol) polarization free energy of solvation -73.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds