Wall clock time and date at job start Wed Apr 1 2020 07:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38036 * 126.29682 * 2 1 4 4 C 1.47430 * 126.41352 * 0.02562 * 3 2 1 5 5 O 1.21605 * 119.99989 * 335.35293 * 4 3 2 6 6 N 1.34775 * 120.00091 * 155.34330 * 4 3 2 7 7 C 1.47588 * 125.62737 * 354.54497 * 6 4 3 8 8 C 1.54060 * 104.77498 * 203.24058 * 7 6 4 9 9 C 1.54309 * 102.56327 * 324.00544 * 8 7 6 10 10 C 1.47084 * 125.62640 * 174.53688 * 6 4 3 11 11 H 1.09002 * 110.00552 * 298.51491 * 10 6 4 12 12 C 1.53005 * 109.87938 * 59.59618 * 10 6 4 13 13 C 1.52178 * 110.77405 * 205.92413 * 8 7 6 14 14 C 1.53268 * 109.27966 * 291.06687 * 13 8 7 15 15 O 1.42924 * 109.29002 * 303.89552 * 14 13 8 16 16 C 1.42919 * 114.24204 * 61.88554 * 15 14 13 17 17 C 1.52181 * 110.77159 * 82.07297 * 8 7 6 18 18 C 1.41286 * 107.17306 * 179.75849 * 3 2 1 19 19 N 1.30445 * 108.02568 * 0.23937 * 18 3 2 20 20 N 1.34263 * 126.28891 * 180.17895 * 2 1 3 21 21 C 1.46503 * 125.75275 * 0.02920 * 20 2 1 22 22 C 1.50699 * 109.47295 * 270.27379 * 21 20 2 23 23 H 1.07996 * 120.00140 * 0.02562 * 22 21 20 24 24 C 1.37878 * 120.00063 * 179.97438 * 22 21 20 25 25 N 1.31518 * 119.99992 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00040 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47242 * 90.00246 * 26 24 22 28 28 H 1.48503 * 109.47240 * 210.00394 * 26 24 22 29 29 H 1.48500 * 109.47112 * 330.00171 * 26 24 22 30 30 H 1.08998 * 109.46910 * 89.99502 * 1 2 3 31 31 H 1.08993 * 109.47420 * 210.00305 * 1 2 3 32 32 H 1.08999 * 109.46731 * 330.00168 * 1 2 3 33 33 H 1.08997 * 110.37582 * 84.41581 * 7 6 4 34 34 H 1.09003 * 110.37497 * 322.06743 * 7 6 4 35 35 H 1.08995 * 110.73338 * 152.90557 * 9 8 7 36 36 H 1.08998 * 110.73290 * 276.22108 * 9 8 7 37 37 H 1.08994 * 109.47320 * 177.83530 * 12 10 6 38 38 H 1.09003 * 109.46390 * 297.83982 * 12 10 6 39 39 H 1.09001 * 109.47249 * 57.83238 * 12 10 6 40 40 H 1.09000 * 109.50252 * 171.12495 * 13 8 7 41 41 H 1.08994 * 109.50323 * 51.00993 * 13 8 7 42 42 H 1.09006 * 109.49640 * 63.83438 * 14 13 8 43 43 H 1.08993 * 109.50104 * 183.90602 * 14 13 8 44 44 H 1.09000 * 109.50237 * 58.05203 * 16 15 14 45 45 H 1.09000 * 109.50201 * 178.16237 * 16 15 14 46 46 H 1.09002 * 109.50141 * 308.99419 * 17 8 7 47 47 H 1.08998 * 109.53937 * 188.88889 * 17 8 7 48 48 H 1.08009 * 125.98886 * 180.24282 * 18 3 2 49 49 H 1.08996 * 109.47418 * 30.27934 * 21 20 2 50 50 H 1.08998 * 109.46833 * 150.27552 * 21 20 2 51 51 H 0.96999 * 120.00024 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1125 0.0000 4 6 1.8860 2.5202 0.0005 5 8 0.7912 2.8164 -0.4382 6 7 2.6987 3.4788 0.4874 7 6 3.9973 3.2498 1.1502 8 6 4.2239 4.5047 2.0147 9 6 3.6261 5.6270 1.1404 10 6 2.4379 4.9257 0.4457 11 1 2.3626 5.2614 -0.5886 12 6 1.1394 5.2420 1.1908 13 6 5.7094 4.7393 2.2468 14 6 6.2598 3.6361 3.1574 15 8 5.5069 3.6071 4.3719 16 6 4.1208 3.3064 4.1960 17 6 3.4722 4.3946 3.3333 18 6 3.6590 0.6497 0.0057 19 7 3.6340 -0.6546 0.0037 20 7 2.3017 -1.0822 -0.0034 21 6 1.8499 -2.4759 -0.0083 22 6 1.6880 -2.9565 1.4107 23 1 1.8999 -2.2904 2.2340 24 6 1.2683 -4.2464 1.6581 25 7 1.0098 -5.0574 0.6555 26 14 1.0683 -4.8424 3.4171 27 1 -0.3164 -4.5680 3.8783 28 1 1.3299 -6.3029 3.4776 29 1 2.0323 -4.1301 4.2937 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 4.7899 3.1518 0.4085 34 1 3.9514 2.3598 1.7778 35 1 3.2781 6.4541 1.7590 36 1 4.3534 5.9725 0.4057 37 1 0.9726 6.3191 1.1889 38 1 0.3059 4.7442 0.6954 39 1 1.2150 4.8878 2.2189 40 1 5.8548 5.7095 2.7218 41 1 6.2346 4.7188 1.2920 42 1 6.1754 2.6730 2.6539 43 1 7.3068 3.8387 3.3824 44 1 4.0179 2.3405 3.7016 45 1 3.6297 3.2721 5.1685 46 1 2.4322 4.1328 3.1386 47 1 3.5152 5.3489 3.8583 48 1 4.5450 1.2674 0.0109 49 1 0.8939 -2.5461 -0.5271 50 1 2.5871 -3.0949 -0.5197 51 1 0.7148 -5.9650 0.8295 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892296062.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:23:08 Heat of formation + Delta-G solvation = -16.784174 kcal Electronic energy + Delta-G solvation = -32411.761487 eV Core-core repulsion = 28312.186891 eV Total energy + Delta-G solvation = -4099.574596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.26080 -40.50846 -38.70544 -37.04316 -33.96350 -33.43912 -32.40539 -31.86215 -31.38493 -30.85579 -28.24923 -27.33212 -26.72394 -25.89040 -23.95555 -23.87829 -23.45282 -22.11162 -20.82495 -19.41034 -19.29001 -18.28254 -17.06393 -16.73700 -16.38465 -16.21193 -15.84991 -15.36478 -15.16016 -15.00174 -14.67021 -14.60970 -14.23061 -13.89845 -13.82710 -13.38484 -13.28344 -13.06267 -12.68701 -12.63501 -12.53909 -12.39842 -12.16862 -12.08736 -11.90539 -11.73367 -11.60419 -11.50041 -11.45623 -11.26642 -11.15108 -11.12746 -10.92021 -10.65401 -10.38275 -10.25604 -10.20409 -9.94785 -9.57416 -9.35481 -8.73000 -8.62766 -8.52143 -7.90597 -6.35273 -4.43493 2.20783 2.79390 3.03047 3.16235 3.23197 3.26907 3.42159 3.70330 3.78287 4.09763 4.22363 4.22573 4.37144 4.73766 4.78461 4.86978 4.93772 4.98635 5.00121 5.09943 5.17060 5.20610 5.24797 5.31525 5.36513 5.41411 5.48775 5.51404 5.56940 5.62837 5.64550 5.67274 5.71451 5.72740 5.83242 5.88733 5.94238 6.01524 6.06761 6.07881 6.28857 6.41985 6.46156 6.62623 6.78364 6.89354 7.02265 7.15888 7.54336 7.71894 7.75610 7.77773 8.36625 8.57309 8.62549 9.23613 10.72843 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011806 B = 0.003364 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.103026 B = 8321.972041 C = 9493.733396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.161 3.839 3 C -0.327 4.327 4 C 0.620 3.380 5 O -0.549 6.549 6 N -0.615 5.615 7 C 0.108 3.892 8 C -0.072 4.072 9 C -0.118 4.118 10 C 0.139 3.861 11 H 0.072 0.928 12 C -0.168 4.168 13 C -0.138 4.138 14 C 0.057 3.943 15 O -0.383 6.383 16 C 0.057 3.943 17 C -0.142 4.142 18 C 0.053 3.947 19 N -0.295 5.295 20 N -0.313 5.313 21 C 0.251 3.749 22 C -0.541 4.541 23 H 0.065 0.935 24 C 0.068 3.932 25 N -0.889 5.889 26 Si 0.907 3.093 27 H -0.276 1.276 28 H -0.282 1.282 29 H -0.271 1.271 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.056 0.944 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.175 0.825 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.363 21.281 2.572 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.024 3.976 3 C -0.343 4.343 4 C 0.413 3.587 5 O -0.428 6.428 6 N -0.350 5.350 7 C -0.015 4.015 8 C -0.073 4.073 9 C -0.155 4.155 10 C 0.036 3.964 11 H 0.090 0.910 12 C -0.226 4.226 13 C -0.176 4.176 14 C -0.020 4.020 15 O -0.301 6.301 16 C -0.019 4.019 17 C -0.179 4.179 18 C -0.134 4.134 19 N -0.115 5.115 20 N -0.090 5.090 21 C 0.134 3.866 22 C -0.579 4.579 23 H 0.083 0.917 24 C -0.136 4.136 25 N -0.526 5.526 26 Si 0.734 3.266 27 H -0.202 1.202 28 H -0.208 1.208 29 H -0.196 1.196 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.112 0.888 44 H 0.074 0.926 45 H 0.112 0.888 46 H 0.101 0.899 47 H 0.092 0.908 48 H 0.191 0.809 49 H 0.074 0.926 50 H 0.075 0.925 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.424 19.935 2.411 21.082 hybrid contribution -0.520 0.217 0.570 0.802 sum 5.904 20.152 2.981 21.210 Atomic orbital electron populations 1.20500 0.86960 1.04133 1.03385 1.21399 0.94833 0.86498 0.94845 1.19616 0.93222 0.92283 1.29159 1.16994 0.82689 0.83288 0.75765 1.90695 1.21008 1.82780 1.48295 1.48285 1.20900 1.05678 1.60119 1.22491 0.85826 0.98145 0.95053 1.21087 0.95576 0.95472 0.95172 1.22722 0.96906 0.97320 0.98601 1.21463 0.94967 0.80484 0.99465 0.91040 1.22302 0.98256 1.01134 1.00865 1.22019 0.94220 1.00488 1.00840 1.22650 0.95700 0.97751 0.85877 1.87916 1.20246 1.91721 1.30256 1.22688 0.81683 0.97010 1.00565 1.22123 1.00496 1.00500 0.94801 1.23876 0.96428 0.92486 1.00582 1.77144 0.98634 1.12198 1.23539 1.49352 1.02443 1.08232 1.48947 1.19847 0.96411 0.70935 0.99408 1.21242 1.47507 0.98159 0.90998 0.91691 1.24923 0.94452 0.95992 0.98245 1.69915 1.44406 1.07256 1.31038 0.86336 0.78748 0.78038 0.83490 1.20206 1.20764 1.19616 0.90235 0.89833 0.89758 0.91386 0.89908 0.89870 0.90456 0.92297 0.90623 0.92222 0.90580 0.90403 0.92753 0.88824 0.92603 0.88778 0.89895 0.90820 0.80855 0.92600 0.92503 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.65 9.22 36.01 0.33 -1.31 16 2 C 0.16 3.28 7.00 -81.60 -0.57 2.71 16 3 C -0.33 -6.05 5.78 -105.07 -0.61 -6.65 16 4 C 0.62 10.49 7.52 -12.52 -0.09 10.40 16 5 O -0.55 -10.46 14.28 5.27 0.08 -10.39 16 6 N -0.62 -7.99 3.06 -164.52 -0.50 -8.49 16 7 C 0.11 1.14 3.35 -2.89 -0.01 1.13 16 8 C -0.07 -0.61 0.54 -154.11 -0.08 -0.69 16 9 C -0.12 -0.90 5.47 -25.27 -0.14 -1.04 16 10 C 0.14 1.48 3.41 -66.83 -0.23 1.26 16 11 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 12 C -0.17 -1.80 8.93 37.16 0.33 -1.47 16 13 C -0.14 -0.97 4.89 -27.01 -0.13 -1.11 16 14 C 0.06 0.48 6.68 37.30 0.25 0.73 16 15 O -0.38 -4.19 10.74 -35.23 -0.38 -4.57 16 16 C 0.06 0.58 6.67 37.30 0.25 0.83 16 17 C -0.14 -1.28 4.63 -27.01 -0.13 -1.41 16 18 C 0.05 0.93 10.20 -16.98 -0.17 0.76 16 19 N -0.29 -6.33 12.50 30.86 0.39 -5.95 16 20 N -0.31 -7.04 3.56 -57.78 -0.21 -7.24 16 21 C 0.25 6.22 5.78 -5.19 -0.03 6.19 16 22 C -0.54 -14.38 9.39 -34.44 -0.32 -14.71 16 23 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 24 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 25 N -0.89 -24.42 13.29 55.43 0.74 -23.68 16 26 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.08 1.55 7.71 -51.93 -0.40 1.15 16 32 H 0.08 1.45 7.21 -51.93 -0.37 1.07 16 33 H 0.07 0.64 7.00 -51.93 -0.36 0.28 16 34 H 0.08 1.00 5.25 -51.93 -0.27 0.73 16 35 H 0.08 0.56 7.69 -51.93 -0.40 0.16 16 36 H 0.08 0.51 8.01 -51.93 -0.42 0.10 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 1.02 6.61 -51.93 -0.34 0.68 16 39 H 0.06 0.63 5.52 -51.93 -0.29 0.35 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.46 8.01 -51.93 -0.42 0.04 16 42 H 0.05 0.47 7.68 -51.93 -0.40 0.07 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.64 6.66 -51.93 -0.35 0.29 16 45 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.08 0.84 5.53 -51.93 -0.29 0.56 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.17 2.38 5.92 -52.48 -0.31 2.07 16 49 H 0.06 1.38 7.64 -51.93 -0.40 0.98 16 50 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 51 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 390.87 15.07 5.89 5.89 Total: -1.00 -30.64 390.87 -8.41 -39.04 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.94 Total: 2.49 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -1.45 Total: -2.68 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.41 Total: -45.36 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.30 Total: -14.96 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.64 -8.41 -39.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892296062.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.261 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds