Wall clock time and date at job start Wed Apr 1 2020 07:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38036 * 126.29682 * 2 1 4 4 C 1.47430 * 126.41352 * 0.02562 * 3 2 1 5 5 O 1.21605 * 119.99989 * 335.35293 * 4 3 2 6 6 N 1.34775 * 120.00091 * 155.34330 * 4 3 2 7 7 C 1.47588 * 125.62737 * 354.54497 * 6 4 3 8 8 C 1.54060 * 104.77498 * 203.24058 * 7 6 4 9 9 C 1.54309 * 102.56327 * 324.00544 * 8 7 6 10 10 C 1.47084 * 125.62640 * 174.53688 * 6 4 3 11 11 H 1.09002 * 110.00552 * 298.51491 * 10 6 4 12 12 C 1.53005 * 109.87938 * 59.59618 * 10 6 4 13 13 C 1.52178 * 110.77405 * 205.92413 * 8 7 6 14 14 C 1.53268 * 109.27966 * 291.06687 * 13 8 7 15 15 O 1.42924 * 109.29002 * 303.89552 * 14 13 8 16 16 C 1.42919 * 114.24204 * 61.88554 * 15 14 13 17 17 C 1.52181 * 110.77159 * 82.07297 * 8 7 6 18 18 C 1.41286 * 107.17306 * 179.75849 * 3 2 1 19 19 N 1.30445 * 108.02568 * 0.23937 * 18 3 2 20 20 N 1.34263 * 126.28891 * 180.17895 * 2 1 3 21 21 C 1.46503 * 125.75275 * 0.02920 * 20 2 1 22 22 C 1.50699 * 109.47295 * 270.27379 * 21 20 2 23 23 H 1.07996 * 120.00140 * 0.02562 * 22 21 20 24 24 C 1.37878 * 120.00063 * 179.97438 * 22 21 20 25 25 N 1.31518 * 119.99992 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00040 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47242 * 90.00246 * 26 24 22 28 28 H 1.48503 * 109.47240 * 210.00394 * 26 24 22 29 29 H 1.48500 * 109.47112 * 330.00171 * 26 24 22 30 30 H 1.08998 * 109.46910 * 89.99502 * 1 2 3 31 31 H 1.08993 * 109.47420 * 210.00305 * 1 2 3 32 32 H 1.08999 * 109.46731 * 330.00168 * 1 2 3 33 33 H 1.08997 * 110.37582 * 84.41581 * 7 6 4 34 34 H 1.09003 * 110.37497 * 322.06743 * 7 6 4 35 35 H 1.08995 * 110.73338 * 152.90557 * 9 8 7 36 36 H 1.08998 * 110.73290 * 276.22108 * 9 8 7 37 37 H 1.08994 * 109.47320 * 177.83530 * 12 10 6 38 38 H 1.09003 * 109.46390 * 297.83982 * 12 10 6 39 39 H 1.09001 * 109.47249 * 57.83238 * 12 10 6 40 40 H 1.09000 * 109.50252 * 171.12495 * 13 8 7 41 41 H 1.08994 * 109.50323 * 51.00993 * 13 8 7 42 42 H 1.09006 * 109.49640 * 63.83438 * 14 13 8 43 43 H 1.08993 * 109.50104 * 183.90602 * 14 13 8 44 44 H 1.09000 * 109.50237 * 58.05203 * 16 15 14 45 45 H 1.09000 * 109.50201 * 178.16237 * 16 15 14 46 46 H 1.09002 * 109.50141 * 308.99419 * 17 8 7 47 47 H 1.08998 * 109.53937 * 188.88889 * 17 8 7 48 48 H 1.08009 * 125.98886 * 180.24282 * 18 3 2 49 49 H 1.08996 * 109.47418 * 30.27934 * 21 20 2 50 50 H 1.08998 * 109.46833 * 150.27552 * 21 20 2 51 51 H 0.96999 * 120.00024 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1125 0.0000 4 6 1.8860 2.5202 0.0005 5 8 0.7912 2.8164 -0.4382 6 7 2.6987 3.4788 0.4874 7 6 3.9973 3.2498 1.1502 8 6 4.2239 4.5047 2.0147 9 6 3.6261 5.6270 1.1404 10 6 2.4379 4.9257 0.4457 11 1 2.3626 5.2614 -0.5886 12 6 1.1394 5.2420 1.1908 13 6 5.7094 4.7393 2.2468 14 6 6.2598 3.6361 3.1574 15 8 5.5069 3.6071 4.3719 16 6 4.1208 3.3064 4.1960 17 6 3.4722 4.3946 3.3333 18 6 3.6590 0.6497 0.0057 19 7 3.6340 -0.6546 0.0037 20 7 2.3017 -1.0822 -0.0034 21 6 1.8499 -2.4759 -0.0083 22 6 1.6880 -2.9565 1.4107 23 1 1.8999 -2.2904 2.2340 24 6 1.2683 -4.2464 1.6581 25 7 1.0098 -5.0574 0.6555 26 14 1.0683 -4.8424 3.4171 27 1 -0.3164 -4.5680 3.8783 28 1 1.3299 -6.3029 3.4776 29 1 2.0323 -4.1301 4.2937 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 4.7899 3.1518 0.4085 34 1 3.9514 2.3598 1.7778 35 1 3.2781 6.4541 1.7590 36 1 4.3534 5.9725 0.4057 37 1 0.9726 6.3191 1.1889 38 1 0.3059 4.7442 0.6954 39 1 1.2150 4.8878 2.2189 40 1 5.8548 5.7095 2.7218 41 1 6.2346 4.7188 1.2920 42 1 6.1754 2.6730 2.6539 43 1 7.3068 3.8387 3.3824 44 1 4.0179 2.3405 3.7016 45 1 3.6297 3.2721 5.1685 46 1 2.4322 4.1328 3.1386 47 1 3.5152 5.3489 3.8583 48 1 4.5450 1.2674 0.0109 49 1 0.8939 -2.5461 -0.5271 50 1 2.5871 -3.0949 -0.5197 51 1 0.7148 -5.9650 0.8295 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892296062.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:23:06 Heat of formation + Delta-G solvation = -35.252820 kcal Electronic energy + Delta-G solvation = -32412.562348 eV Core-core repulsion = 28312.186891 eV Total energy + Delta-G solvation = -4100.375457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.48983 -41.66776 -39.78715 -38.06796 -35.84930 -34.38532 -33.92457 -33.16567 -32.37844 -32.03439 -29.21528 -28.93251 -28.21091 -26.82393 -25.48689 -24.71931 -24.52492 -23.27093 -22.10932 -20.73616 -20.21515 -19.46522 -18.87972 -18.20613 -17.33867 -16.98667 -16.87833 -16.78606 -16.40571 -16.25478 -16.02212 -15.70877 -15.31838 -15.05960 -14.86464 -14.66814 -14.39495 -14.35973 -13.99366 -13.83249 -13.71101 -13.62027 -13.36264 -13.17301 -13.13289 -13.10407 -12.96956 -12.73553 -12.68332 -12.38131 -12.32759 -12.15622 -12.03914 -11.89941 -11.85409 -11.76060 -11.31999 -10.99527 -10.77346 -10.70576 -10.31739 -10.26939 -9.72272 -9.38806 -8.39078 -6.55764 0.68402 1.29920 1.36291 1.37595 1.47545 1.62888 2.06623 2.31097 2.42710 2.93063 3.00123 3.36161 3.42202 3.67997 3.70394 3.78539 4.05089 4.08347 4.11055 4.15808 4.17602 4.22060 4.25832 4.39605 4.44617 4.45517 4.61570 4.61664 4.66466 4.72843 4.74887 4.78137 4.85044 4.86016 4.89296 4.94148 4.97226 4.99328 5.09320 5.10418 5.16623 5.21074 5.32191 5.33250 5.45020 5.47624 5.55399 5.69091 5.73091 6.02481 6.30497 6.53231 6.54815 6.79631 7.15528 7.28944 8.68875 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011806 B = 0.003364 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.103026 B = 8321.972041 C = 9493.733396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.143 3.857 3 C -0.326 4.326 4 C 0.617 3.383 5 O -0.576 6.576 6 N -0.608 5.608 7 C 0.100 3.900 8 C -0.066 4.066 9 C -0.104 4.104 10 C 0.132 3.868 11 H 0.070 0.930 12 C -0.164 4.164 13 C -0.129 4.129 14 C 0.048 3.952 15 O -0.400 6.400 16 C 0.056 3.944 17 C -0.137 4.137 18 C 0.074 3.926 19 N -0.333 5.333 20 N -0.336 5.336 21 C 0.268 3.732 22 C -0.555 4.555 23 H 0.052 0.948 24 C 0.025 3.975 25 N -0.916 5.916 26 Si 0.971 3.029 27 H -0.266 1.266 28 H -0.274 1.274 29 H -0.273 1.273 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.047 0.953 43 H 0.109 0.891 44 H 0.036 0.964 45 H 0.096 0.904 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.214 0.786 49 H 0.049 0.951 50 H 0.031 0.969 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.761 24.070 3.439 25.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.007 3.993 3 C -0.341 4.341 4 C 0.408 3.592 5 O -0.458 6.458 6 N -0.340 5.340 7 C -0.023 4.023 8 C -0.066 4.066 9 C -0.141 4.141 10 C 0.030 3.970 11 H 0.088 0.912 12 C -0.222 4.222 13 C -0.167 4.167 14 C -0.028 4.028 15 O -0.319 6.319 16 C -0.020 4.020 17 C -0.174 4.174 18 C -0.112 4.112 19 N -0.153 5.153 20 N -0.113 5.113 21 C 0.149 3.851 22 C -0.593 4.593 23 H 0.070 0.930 24 C -0.176 4.176 25 N -0.554 5.554 26 Si 0.794 3.206 27 H -0.191 1.191 28 H -0.199 1.199 29 H -0.198 1.198 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.117 0.883 42 H 0.065 0.935 43 H 0.127 0.873 44 H 0.054 0.946 45 H 0.114 0.886 46 H 0.087 0.913 47 H 0.106 0.894 48 H 0.231 0.769 49 H 0.067 0.933 50 H 0.049 0.951 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.846 22.763 3.285 24.300 hybrid contribution -0.897 -0.541 0.293 1.088 sum 6.949 22.222 3.577 23.556 Atomic orbital electron populations 1.20469 0.85896 1.03787 1.03991 1.21885 0.95848 0.86605 0.94969 1.19919 0.93281 0.93026 1.27872 1.16794 0.82879 0.83241 0.76274 1.90682 1.22172 1.83095 1.49808 1.48271 1.21022 1.06277 1.58473 1.22716 0.85028 0.98904 0.95608 1.21057 0.96770 0.94495 0.94311 1.22720 0.95723 0.96941 0.98735 1.21724 0.96421 0.78984 0.99907 0.91209 1.22257 0.97161 1.02445 1.00298 1.21987 0.92780 1.00321 1.01568 1.22865 0.96385 0.98153 0.85442 1.87893 1.20426 1.91758 1.31847 1.22660 0.81951 0.96609 1.00807 1.22068 0.99556 1.00563 0.95212 1.24470 0.97493 0.91509 0.97745 1.77091 0.98423 1.14126 1.25616 1.49091 1.03256 1.07713 1.51241 1.19368 0.95214 0.72275 0.98221 1.21373 1.47982 0.98502 0.91455 0.92980 1.25721 0.93807 0.95916 1.02200 1.69998 1.44774 1.07685 1.32972 0.85362 0.78975 0.77678 0.78554 1.19082 1.19865 1.19814 0.89151 0.90917 0.89111 0.89363 0.91685 0.87999 0.88270 0.89721 0.93917 0.92302 0.89317 0.88342 0.93483 0.87286 0.94575 0.88622 0.91299 0.89379 0.76926 0.93269 0.95076 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.10 9.22 71.24 0.66 -2.44 16 2 C 0.14 5.96 7.00 42.14 0.29 6.26 16 3 C -0.33 -12.06 5.78 -20.15 -0.12 -12.18 16 4 C 0.62 20.62 7.52 86.66 0.65 21.27 16 5 O -0.58 -22.07 14.28 -4.05 -0.06 -22.13 16 6 N -0.61 -14.78 3.06 -792.69 -2.42 -17.20 16 7 C 0.10 1.87 3.35 86.53 0.29 2.16 16 8 C -0.07 -0.88 0.54 -51.92 -0.03 -0.91 16 9 C -0.10 -1.14 5.47 31.54 0.17 -0.97 16 10 C 0.13 2.48 3.41 45.38 0.15 2.63 16 11 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 12 C -0.16 -3.24 8.93 71.98 0.64 -2.60 16 13 C -0.13 -1.29 4.89 30.41 0.15 -1.14 16 14 C 0.05 0.69 6.68 72.07 0.48 1.17 16 15 O -0.40 -8.11 10.74 -148.98 -1.60 -9.71 16 16 C 0.06 1.10 6.67 72.07 0.48 1.58 16 17 C -0.14 -2.18 4.63 30.41 0.14 -2.04 16 18 C 0.07 2.59 10.20 85.65 0.87 3.46 16 19 N -0.33 -14.56 12.50 -56.27 -0.70 -15.27 16 20 N -0.34 -15.69 3.56 -336.70 -1.20 -16.89 16 21 C 0.27 13.93 5.78 85.63 0.49 14.42 16 22 C -0.56 -30.54 9.39 25.60 0.24 -30.30 16 23 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 24 C 0.03 1.35 5.46 84.65 0.46 1.81 16 25 N -0.92 -51.30 13.29 21.45 0.28 -51.01 16 26 Si 0.97 42.53 29.54 68.60 2.03 44.55 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 29 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 30 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.07 2.82 7.71 -2.39 -0.02 2.80 16 32 H 0.09 3.21 7.21 -2.39 -0.02 3.20 16 33 H 0.09 1.33 7.00 -2.39 -0.02 1.32 16 34 H 0.06 1.50 5.25 -2.39 -0.01 1.49 16 35 H 0.10 0.84 7.69 -2.39 -0.02 0.82 16 36 H 0.10 0.76 8.01 -2.39 -0.02 0.74 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.04 1.14 6.61 -2.39 -0.02 1.12 16 39 H 0.06 1.17 5.52 -2.39 -0.01 1.15 16 40 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.10 0.64 8.01 -2.39 -0.02 0.62 16 42 H 0.05 0.73 7.68 -2.38 -0.02 0.71 16 43 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.04 0.83 6.66 -2.39 -0.02 0.82 16 45 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.07 1.31 5.53 -2.39 -0.01 1.30 16 47 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.21 5.39 5.92 -2.91 -0.02 5.37 16 49 H 0.05 2.57 7.64 -2.39 -0.02 2.55 16 50 H 0.03 1.74 8.14 -2.39 -0.02 1.73 16 51 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -68.64 390.87 3.31 -65.33 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.94 Total: 20.14 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 6.04 Total: 2.19 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -4.04 Total: -100.37 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -1.66 Total: -31.84 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -68.64 3.31 -65.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892296062.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.078 kcal (2) G-P(sol) polarization free energy of solvation -68.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds