Wall clock time and date at job start Wed Apr 1 2020 07:23:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38036 * 126.29682 * 2 1
4 4 C 1.47430 * 126.41352 * 0.02562 * 3 2 1
5 5 O 1.21605 * 119.99989 * 335.35293 * 4 3 2
6 6 N 1.34775 * 120.00091 * 155.34330 * 4 3 2
7 7 C 1.47588 * 125.62737 * 354.54497 * 6 4 3
8 8 C 1.54060 * 104.77498 * 203.24058 * 7 6 4
9 9 C 1.54309 * 102.56327 * 324.00544 * 8 7 6
10 10 C 1.47084 * 125.62640 * 174.53688 * 6 4 3
11 11 H 1.09002 * 110.00552 * 298.51491 * 10 6 4
12 12 C 1.53005 * 109.87938 * 59.59618 * 10 6 4
13 13 C 1.52178 * 110.77405 * 205.92413 * 8 7 6
14 14 C 1.53268 * 109.27966 * 291.06687 * 13 8 7
15 15 O 1.42924 * 109.29002 * 303.89552 * 14 13 8
16 16 C 1.42919 * 114.24204 * 61.88554 * 15 14 13
17 17 C 1.52181 * 110.77159 * 82.07297 * 8 7 6
18 18 C 1.41286 * 107.17306 * 179.75849 * 3 2 1
19 19 N 1.30445 * 108.02568 * 0.23937 * 18 3 2
20 20 N 1.34263 * 126.28891 * 180.17895 * 2 1 3
21 21 C 1.46503 * 125.75275 * 0.02920 * 20 2 1
22 22 C 1.50699 * 109.47295 * 270.27379 * 21 20 2
23 23 H 1.07996 * 120.00140 * 0.02562 * 22 21 20
24 24 C 1.37878 * 120.00063 * 179.97438 * 22 21 20
25 25 N 1.31518 * 119.99992 * 0.02562 * 24 22 21
26 26 Si 1.86798 * 120.00040 * 179.97438 * 24 22 21
27 27 H 1.48499 * 109.47242 * 90.00246 * 26 24 22
28 28 H 1.48503 * 109.47240 * 210.00394 * 26 24 22
29 29 H 1.48500 * 109.47112 * 330.00171 * 26 24 22
30 30 H 1.08998 * 109.46910 * 89.99502 * 1 2 3
31 31 H 1.08993 * 109.47420 * 210.00305 * 1 2 3
32 32 H 1.08999 * 109.46731 * 330.00168 * 1 2 3
33 33 H 1.08997 * 110.37582 * 84.41581 * 7 6 4
34 34 H 1.09003 * 110.37497 * 322.06743 * 7 6 4
35 35 H 1.08995 * 110.73338 * 152.90557 * 9 8 7
36 36 H 1.08998 * 110.73290 * 276.22108 * 9 8 7
37 37 H 1.08994 * 109.47320 * 177.83530 * 12 10 6
38 38 H 1.09003 * 109.46390 * 297.83982 * 12 10 6
39 39 H 1.09001 * 109.47249 * 57.83238 * 12 10 6
40 40 H 1.09000 * 109.50252 * 171.12495 * 13 8 7
41 41 H 1.08994 * 109.50323 * 51.00993 * 13 8 7
42 42 H 1.09006 * 109.49640 * 63.83438 * 14 13 8
43 43 H 1.08993 * 109.50104 * 183.90602 * 14 13 8
44 44 H 1.09000 * 109.50237 * 58.05203 * 16 15 14
45 45 H 1.09000 * 109.50201 * 178.16237 * 16 15 14
46 46 H 1.09002 * 109.50141 * 308.99419 * 17 8 7
47 47 H 1.08998 * 109.53937 * 188.88889 * 17 8 7
48 48 H 1.08009 * 125.98886 * 180.24282 * 18 3 2
49 49 H 1.08996 * 109.47418 * 30.27934 * 21 20 2
50 50 H 1.08998 * 109.46833 * 150.27552 * 21 20 2
51 51 H 0.96999 * 120.00024 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3241 1.1125 0.0000
4 6 1.8860 2.5202 0.0005
5 8 0.7912 2.8164 -0.4382
6 7 2.6987 3.4788 0.4874
7 6 3.9973 3.2498 1.1502
8 6 4.2239 4.5047 2.0147
9 6 3.6261 5.6270 1.1404
10 6 2.4379 4.9257 0.4457
11 1 2.3626 5.2614 -0.5886
12 6 1.1394 5.2420 1.1908
13 6 5.7094 4.7393 2.2468
14 6 6.2598 3.6361 3.1574
15 8 5.5069 3.6071 4.3719
16 6 4.1208 3.3064 4.1960
17 6 3.4722 4.3946 3.3333
18 6 3.6590 0.6497 0.0057
19 7 3.6340 -0.6546 0.0037
20 7 2.3017 -1.0822 -0.0034
21 6 1.8499 -2.4759 -0.0083
22 6 1.6880 -2.9565 1.4107
23 1 1.8999 -2.2904 2.2340
24 6 1.2683 -4.2464 1.6581
25 7 1.0098 -5.0574 0.6555
26 14 1.0683 -4.8424 3.4171
27 1 -0.3164 -4.5680 3.8783
28 1 1.3299 -6.3029 3.4776
29 1 2.0323 -4.1301 4.2937
30 1 -0.3633 0.0001 -1.0277
31 1 -0.3634 -0.8899 0.5138
32 1 -0.3633 0.8900 0.5138
33 1 4.7899 3.1518 0.4085
34 1 3.9514 2.3598 1.7778
35 1 3.2781 6.4541 1.7590
36 1 4.3534 5.9725 0.4057
37 1 0.9726 6.3191 1.1889
38 1 0.3059 4.7442 0.6954
39 1 1.2150 4.8878 2.2189
40 1 5.8548 5.7095 2.7218
41 1 6.2346 4.7188 1.2920
42 1 6.1754 2.6730 2.6539
43 1 7.3068 3.8387 3.3824
44 1 4.0179 2.3405 3.7016
45 1 3.6297 3.2721 5.1685
46 1 2.4322 4.1328 3.1386
47 1 3.5152 5.3489 3.8583
48 1 4.5450 1.2674 0.0109
49 1 0.8939 -2.5461 -0.5271
50 1 2.5871 -3.0949 -0.5197
51 1 0.7148 -5.9650 0.8295
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000892296062.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 07:23:06
Heat of formation + Delta-G solvation = -35.252820 kcal
Electronic energy + Delta-G solvation = -32412.562348 eV
Core-core repulsion = 28312.186891 eV
Total energy + Delta-G solvation = -4100.375457 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.25 seconds
Orbital eigenvalues (eV)
-42.48983 -41.66776 -39.78715 -38.06796 -35.84930 -34.38532 -33.92457 -33.16567
-32.37844 -32.03439 -29.21528 -28.93251 -28.21091 -26.82393 -25.48689 -24.71931
-24.52492 -23.27093 -22.10932 -20.73616 -20.21515 -19.46522 -18.87972 -18.20613
-17.33867 -16.98667 -16.87833 -16.78606 -16.40571 -16.25478 -16.02212 -15.70877
-15.31838 -15.05960 -14.86464 -14.66814 -14.39495 -14.35973 -13.99366 -13.83249
-13.71101 -13.62027 -13.36264 -13.17301 -13.13289 -13.10407 -12.96956 -12.73553
-12.68332 -12.38131 -12.32759 -12.15622 -12.03914 -11.89941 -11.85409 -11.76060
-11.31999 -10.99527 -10.77346 -10.70576 -10.31739 -10.26939 -9.72272 -9.38806
-8.39078 -6.55764 0.68402 1.29920 1.36291 1.37595 1.47545 1.62888
2.06623 2.31097 2.42710 2.93063 3.00123 3.36161 3.42202 3.67997
3.70394 3.78539 4.05089 4.08347 4.11055 4.15808 4.17602 4.22060
4.25832 4.39605 4.44617 4.45517 4.61570 4.61664 4.66466 4.72843
4.74887 4.78137 4.85044 4.86016 4.89296 4.94148 4.97226 4.99328
5.09320 5.10418 5.16623 5.21074 5.32191 5.33250 5.45020 5.47624
5.55399 5.69091 5.73091 6.02481 6.30497 6.53231 6.54815 6.79631
7.15528 7.28944 8.68875
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011806 B = 0.003364 C = 0.002949
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2371.103026 B = 8321.972041 C = 9493.733396
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 C 0.143 3.857
3 C -0.326 4.326
4 C 0.617 3.383
5 O -0.576 6.576
6 N -0.608 5.608
7 C 0.100 3.900
8 C -0.066 4.066
9 C -0.104 4.104
10 C 0.132 3.868
11 H 0.070 0.930
12 C -0.164 4.164
13 C -0.129 4.129
14 C 0.048 3.952
15 O -0.400 6.400
16 C 0.056 3.944
17 C -0.137 4.137
18 C 0.074 3.926
19 N -0.333 5.333
20 N -0.336 5.336
21 C 0.268 3.732
22 C -0.555 4.555
23 H 0.052 0.948
24 C 0.025 3.975
25 N -0.916 5.916
26 Si 0.971 3.029
27 H -0.266 1.266
28 H -0.274 1.274
29 H -0.273 1.273
30 H 0.090 0.910
31 H 0.072 0.928
32 H 0.090 0.910
33 H 0.088 0.912
34 H 0.065 0.935
35 H 0.102 0.898
36 H 0.099 0.901
37 H 0.084 0.916
38 H 0.042 0.958
39 H 0.058 0.942
40 H 0.088 0.912
41 H 0.098 0.902
42 H 0.047 0.953
43 H 0.109 0.891
44 H 0.036 0.964
45 H 0.096 0.904
46 H 0.069 0.931
47 H 0.088 0.912
48 H 0.214 0.786
49 H 0.049 0.951
50 H 0.031 0.969
51 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.761 24.070 3.439 25.523
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.007 3.993
3 C -0.341 4.341
4 C 0.408 3.592
5 O -0.458 6.458
6 N -0.340 5.340
7 C -0.023 4.023
8 C -0.066 4.066
9 C -0.141 4.141
10 C 0.030 3.970
11 H 0.088 0.912
12 C -0.222 4.222
13 C -0.167 4.167
14 C -0.028 4.028
15 O -0.319 6.319
16 C -0.020 4.020
17 C -0.174 4.174
18 C -0.112 4.112
19 N -0.153 5.153
20 N -0.113 5.113
21 C 0.149 3.851
22 C -0.593 4.593
23 H 0.070 0.930
24 C -0.176 4.176
25 N -0.554 5.554
26 Si 0.794 3.206
27 H -0.191 1.191
28 H -0.199 1.199
29 H -0.198 1.198
30 H 0.108 0.892
31 H 0.091 0.909
32 H 0.109 0.891
33 H 0.106 0.894
34 H 0.083 0.917
35 H 0.120 0.880
36 H 0.117 0.883
37 H 0.103 0.897
38 H 0.061 0.939
39 H 0.077 0.923
40 H 0.107 0.893
41 H 0.117 0.883
42 H 0.065 0.935
43 H 0.127 0.873
44 H 0.054 0.946
45 H 0.114 0.886
46 H 0.087 0.913
47 H 0.106 0.894
48 H 0.231 0.769
49 H 0.067 0.933
50 H 0.049 0.951
51 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 7.846 22.763 3.285 24.300
hybrid contribution -0.897 -0.541 0.293 1.088
sum 6.949 22.222 3.577 23.556
Atomic orbital electron populations
1.20469 0.85896 1.03787 1.03991 1.21885 0.95848 0.86605 0.94969
1.19919 0.93281 0.93026 1.27872 1.16794 0.82879 0.83241 0.76274
1.90682 1.22172 1.83095 1.49808 1.48271 1.21022 1.06277 1.58473
1.22716 0.85028 0.98904 0.95608 1.21057 0.96770 0.94495 0.94311
1.22720 0.95723 0.96941 0.98735 1.21724 0.96421 0.78984 0.99907
0.91209 1.22257 0.97161 1.02445 1.00298 1.21987 0.92780 1.00321
1.01568 1.22865 0.96385 0.98153 0.85442 1.87893 1.20426 1.91758
1.31847 1.22660 0.81951 0.96609 1.00807 1.22068 0.99556 1.00563
0.95212 1.24470 0.97493 0.91509 0.97745 1.77091 0.98423 1.14126
1.25616 1.49091 1.03256 1.07713 1.51241 1.19368 0.95214 0.72275
0.98221 1.21373 1.47982 0.98502 0.91455 0.92980 1.25721 0.93807
0.95916 1.02200 1.69998 1.44774 1.07685 1.32972 0.85362 0.78975
0.77678 0.78554 1.19082 1.19865 1.19814 0.89151 0.90917 0.89111
0.89363 0.91685 0.87999 0.88270 0.89721 0.93917 0.92302 0.89317
0.88342 0.93483 0.87286 0.94575 0.88622 0.91299 0.89379 0.76926
0.93269 0.95076 0.91641
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -3.10 9.22 71.24 0.66 -2.44 16
2 C 0.14 5.96 7.00 42.14 0.29 6.26 16
3 C -0.33 -12.06 5.78 -20.15 -0.12 -12.18 16
4 C 0.62 20.62 7.52 86.66 0.65 21.27 16
5 O -0.58 -22.07 14.28 -4.05 -0.06 -22.13 16
6 N -0.61 -14.78 3.06 -792.69 -2.42 -17.20 16
7 C 0.10 1.87 3.35 86.53 0.29 2.16 16
8 C -0.07 -0.88 0.54 -51.92 -0.03 -0.91 16
9 C -0.10 -1.14 5.47 31.54 0.17 -0.97 16
10 C 0.13 2.48 3.41 45.38 0.15 2.63 16
11 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16
12 C -0.16 -3.24 8.93 71.98 0.64 -2.60 16
13 C -0.13 -1.29 4.89 30.41 0.15 -1.14 16
14 C 0.05 0.69 6.68 72.07 0.48 1.17 16
15 O -0.40 -8.11 10.74 -148.98 -1.60 -9.71 16
16 C 0.06 1.10 6.67 72.07 0.48 1.58 16
17 C -0.14 -2.18 4.63 30.41 0.14 -2.04 16
18 C 0.07 2.59 10.20 85.65 0.87 3.46 16
19 N -0.33 -14.56 12.50 -56.27 -0.70 -15.27 16
20 N -0.34 -15.69 3.56 -336.70 -1.20 -16.89 16
21 C 0.27 13.93 5.78 85.63 0.49 14.42 16
22 C -0.56 -30.54 9.39 25.60 0.24 -30.30 16
23 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16
24 C 0.03 1.35 5.46 84.65 0.46 1.81 16
25 N -0.92 -51.30 13.29 21.45 0.28 -51.01 16
26 Si 0.97 42.53 29.54 68.60 2.03 44.55 16
27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16
28 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16
29 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16
30 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16
31 H 0.07 2.82 7.71 -2.39 -0.02 2.80 16
32 H 0.09 3.21 7.21 -2.39 -0.02 3.20 16
33 H 0.09 1.33 7.00 -2.39 -0.02 1.32 16
34 H 0.06 1.50 5.25 -2.39 -0.01 1.49 16
35 H 0.10 0.84 7.69 -2.39 -0.02 0.82 16
36 H 0.10 0.76 8.01 -2.39 -0.02 0.74 16
37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
38 H 0.04 1.14 6.61 -2.39 -0.02 1.12 16
39 H 0.06 1.17 5.52 -2.39 -0.01 1.15 16
40 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16
41 H 0.10 0.64 8.01 -2.39 -0.02 0.62 16
42 H 0.05 0.73 7.68 -2.38 -0.02 0.71 16
43 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16
44 H 0.04 0.83 6.66 -2.39 -0.02 0.82 16
45 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16
46 H 0.07 1.31 5.53 -2.39 -0.01 1.30 16
47 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16
48 H 0.21 5.39 5.92 -2.91 -0.02 5.37 16
49 H 0.05 2.57 7.64 -2.39 -0.02 2.55 16
50 H 0.03 1.74 8.14 -2.39 -0.02 1.73 16
51 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16
Total: -1.00 -68.64 390.87 3.31 -65.33
By element:
Atomic # 1 Polarization: 19.20 SS G_CDS: 0.94 Total: 20.14 kcal
Atomic # 6 Polarization: -3.85 SS G_CDS: 6.04 Total: 2.19 kcal
Atomic # 7 Polarization: -96.33 SS G_CDS: -4.04 Total: -100.37 kcal
Atomic # 8 Polarization: -30.18 SS G_CDS: -1.66 Total: -31.84 kcal
Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal
Total: -68.64 3.31 -65.33 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000892296062.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.078 kcal
(2) G-P(sol) polarization free energy of solvation -68.638 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.560 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.331 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.253 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.26 seconds