Wall clock time and date at job start Wed Apr 1 2020 07:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38054 * 126.29142 * 2 1 4 4 C 1.47420 * 126.41289 * 0.02562 * 3 2 1 5 5 O 1.21607 * 119.99955 * 321.66880 * 4 3 2 6 6 N 1.34777 * 120.00116 * 141.67402 * 4 3 2 7 7 C 1.47157 * 121.05095 * 354.75190 * 6 4 3 8 8 C 1.53279 * 108.53459 * 231.01496 * 7 6 4 9 9 H 1.09006 * 109.50615 * 67.17083 * 8 7 6 10 10 C 1.53001 * 109.51171 * 187.26581 * 8 7 6 11 11 O 1.43069 * 109.22848 * 307.19754 * 8 7 6 12 12 C 1.42215 * 114.29938 * 61.36836 * 11 8 7 13 13 C 1.54701 * 110.16262 * 61.10511 * 12 11 8 14 14 C 1.54976 * 102.55450 * 81.71003 * 13 12 11 15 15 C 1.54323 * 104.37170 * 37.37548 * 14 13 12 16 16 C 1.53705 * 110.60459 * 176.55638 * 12 11 8 17 17 C 1.47284 * 121.05523 * 174.72900 * 6 4 3 18 18 C 1.41290 * 107.16900 * 179.75672 * 3 2 1 19 19 N 1.30453 * 108.02318 * 0.24595 * 18 3 2 20 20 N 1.34263 * 126.29363 * 180.17916 * 2 1 3 21 21 C 1.46499 * 125.75010 * 359.95599 * 20 2 1 22 22 C 1.50697 * 109.47309 * 270.30940 * 21 20 2 23 23 H 1.07997 * 119.99868 * 0.02562 * 22 21 20 24 24 C 1.37876 * 119.99682 * 180.02562 * 22 21 20 25 25 N 1.31511 * 120.00391 * 359.97438 * 24 22 21 26 26 Si 1.86810 * 119.99847 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47168 * 89.99535 * 26 24 22 28 28 H 1.48494 * 109.46932 * 209.99832 * 26 24 22 29 29 H 1.48501 * 109.46745 * 329.99863 * 26 24 22 30 30 H 1.08997 * 109.47100 * 89.99592 * 1 2 3 31 31 H 1.09000 * 109.47046 * 209.99948 * 1 2 3 32 32 H 1.09001 * 109.47119 * 329.99891 * 1 2 3 33 33 H 1.08997 * 109.62966 * 350.73095 * 7 6 4 34 34 H 1.09002 * 109.62920 * 111.30736 * 7 6 4 35 35 H 1.08993 * 109.46956 * 60.00296 * 10 8 7 36 36 H 1.09006 * 109.46768 * 180.02562 * 10 8 7 37 37 H 1.09000 * 109.47115 * 299.99994 * 10 8 7 38 38 H 1.08999 * 110.90122 * 323.42764 * 13 12 11 39 39 H 1.09007 * 110.77258 * 199.93250 * 13 12 11 40 40 H 1.09004 * 110.47432 * 278.62069 * 14 13 12 41 41 H 1.08998 * 110.48118 * 156.13528 * 14 13 12 42 42 H 1.08994 * 110.03214 * 95.70681 * 15 14 13 43 43 H 1.08996 * 110.03632 * 217.09522 * 15 14 13 44 44 H 1.09001 * 110.05786 * 145.07876 * 16 12 11 45 45 H 1.09001 * 110.05451 * 23.58555 * 16 12 11 46 46 H 1.09007 * 109.67698 * 10.72578 * 17 6 4 47 47 H 1.08993 * 109.71292 * 250.19365 * 17 6 4 48 48 H 1.08001 * 125.98734 * 180.23523 * 18 3 2 49 49 H 1.09000 * 109.47130 * 30.31746 * 21 20 2 50 50 H 1.09006 * 109.46548 * 150.30706 * 21 20 2 51 51 H 0.97001 * 120.00372 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1127 0.0000 4 6 1.8859 2.5203 0.0005 5 8 0.9161 2.8554 -0.6522 6 7 2.5600 3.4358 0.7243 7 6 3.6650 3.0383 1.6112 8 6 3.4203 3.6460 2.9969 9 1 2.5426 3.1828 3.4477 10 6 4.6412 3.4001 3.8857 11 8 3.2029 5.0537 2.8624 12 6 2.0694 5.3982 2.0756 13 6 0.7813 4.8339 2.7204 14 6 0.4586 5.8898 3.8079 15 6 0.8351 7.2374 3.1571 16 6 1.8662 6.9216 2.0577 17 6 2.2145 4.8657 0.6524 18 6 3.6591 0.6499 0.0057 19 7 3.6341 -0.6544 0.0036 20 7 2.3018 -1.0821 -0.0034 21 6 1.8501 -2.4758 -0.0068 22 6 1.6888 -2.9551 1.4127 23 1 1.9011 -2.2882 2.2353 24 6 1.2703 -4.2451 1.6614 25 7 1.0113 -5.0570 0.6598 26 14 1.0696 -4.8391 3.4211 27 1 -0.3155 -4.5654 3.8810 28 1 1.3326 -6.2992 3.4836 29 1 2.0324 -4.1247 4.2974 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 3.6994 1.9516 1.6889 34 1 4.6081 3.4095 1.2101 35 1 5.5181 3.8650 3.4352 36 1 4.4662 3.8321 4.8710 37 1 4.8087 2.3275 3.9842 38 1 0.9671 3.8591 3.1713 39 1 -0.0238 4.7750 1.9879 40 1 1.0611 5.7154 4.6994 41 1 -0.6026 5.8695 4.0561 42 1 -0.0489 7.7000 2.7183 43 1 1.2734 7.9021 3.9015 44 1 1.4852 7.2366 1.0863 45 1 2.8079 7.4269 2.2721 46 1 1.2734 4.9894 0.1164 47 1 3.0053 5.4095 0.1358 48 1 4.5449 1.2677 0.0108 49 1 0.8939 -2.5465 -0.5252 50 1 2.5871 -3.0952 -0.5180 51 1 0.7172 -5.9647 0.8347 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892299128.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:26:40 Heat of formation + Delta-G solvation = -15.264214 kcal Electronic energy + Delta-G solvation = -32214.763358 eV Core-core repulsion = 28115.254672 eV Total energy + Delta-G solvation = -4099.508686 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.13592 -40.42455 -38.38860 -36.63284 -34.65210 -33.88979 -32.46605 -32.11781 -31.23609 -29.43585 -29.02210 -27.41573 -26.77229 -26.44576 -24.82386 -23.38499 -22.33282 -21.54544 -20.50984 -19.81318 -19.52718 -18.44768 -17.09273 -16.97943 -16.71609 -16.15601 -15.88169 -15.45114 -15.18694 -14.80326 -14.55962 -14.48508 -14.31261 -13.95618 -13.58570 -13.32480 -13.15611 -13.06038 -12.61324 -12.53647 -12.51433 -12.26771 -12.25375 -11.89036 -11.82451 -11.72220 -11.55211 -11.51968 -11.45299 -11.32151 -11.14553 -10.94772 -10.93340 -10.64796 -10.60401 -10.40334 -10.26756 -9.98132 -9.92441 -9.45169 -8.74767 -8.60546 -8.45785 -7.90555 -6.36835 -4.45277 2.21488 2.75507 2.93136 3.14588 3.21671 3.24447 3.37662 3.42739 3.64493 4.20677 4.28318 4.38638 4.54231 4.67829 4.77465 4.93942 4.94215 4.98197 5.10852 5.16379 5.20901 5.24743 5.30890 5.40987 5.41841 5.46881 5.50766 5.56592 5.59612 5.64125 5.68732 5.71747 5.75109 5.78558 5.84754 5.90595 5.95827 5.97049 6.02912 6.09535 6.16234 6.34080 6.42066 6.57129 6.75366 6.87856 7.13004 7.15941 7.52218 7.53147 7.73894 7.75582 8.34112 8.48178 8.60375 9.21874 10.71245 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013796 B = 0.002975 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.128415 B = 9408.941212 C = 9810.720333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.157 3.843 3 C -0.329 4.329 4 C 0.610 3.390 5 O -0.549 6.549 6 N -0.615 5.615 7 C 0.076 3.924 8 C 0.071 3.929 9 H 0.067 0.933 10 C -0.142 4.142 11 O -0.363 6.363 12 C 0.104 3.896 13 C -0.148 4.148 14 C -0.120 4.120 15 C -0.121 4.121 16 C -0.107 4.107 17 C 0.096 3.904 18 C 0.054 3.946 19 N -0.293 5.293 20 N -0.312 5.312 21 C 0.251 3.749 22 C -0.541 4.541 23 H 0.065 0.935 24 C 0.068 3.932 25 N -0.889 5.889 26 Si 0.907 3.093 27 H -0.276 1.276 28 H -0.282 1.282 29 H -0.271 1.271 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.069 0.931 48 H 0.176 0.824 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.198 21.406 4.488 21.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.020 3.980 3 C -0.344 4.344 4 C 0.401 3.599 5 O -0.427 6.427 6 N -0.349 5.349 7 C -0.048 4.048 8 C 0.012 3.988 9 H 0.085 0.915 10 C -0.200 4.200 11 O -0.282 6.282 12 C 0.064 3.936 13 C -0.185 4.185 14 C -0.157 4.157 15 C -0.158 4.158 16 C -0.145 4.145 17 C -0.027 4.027 18 C -0.132 4.132 19 N -0.113 5.113 20 N -0.089 5.089 21 C 0.134 3.866 22 C -0.579 4.579 23 H 0.083 0.917 24 C -0.136 4.136 25 N -0.526 5.526 26 Si 0.734 3.266 27 H -0.202 1.202 28 H -0.208 1.208 29 H -0.196 1.196 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.119 0.881 47 H 0.087 0.913 48 H 0.193 0.807 49 H 0.074 0.926 50 H 0.075 0.925 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.422 20.244 4.141 20.804 hybrid contribution -0.522 0.024 0.792 0.949 sum 1.900 20.267 4.933 20.946 Atomic orbital electron populations 1.20474 0.87087 1.03958 1.03452 1.21353 0.94740 0.86494 0.95385 1.19607 0.93420 0.92285 1.29101 1.17414 0.81140 0.83961 0.77407 1.90706 1.27372 1.81050 1.43595 1.47913 1.35465 1.06584 1.44947 1.22663 0.89766 1.02553 0.89798 1.22543 0.99067 0.82163 0.94987 0.91510 1.21721 0.96445 1.02439 0.99401 1.87828 1.46390 1.22690 1.71286 1.22229 0.86260 0.95248 0.89904 1.23085 0.97493 0.99172 0.98759 1.22317 1.00905 0.94289 0.98217 1.22126 0.98460 0.97596 0.97634 1.22033 1.00186 0.92557 0.99760 1.22126 1.02875 0.81077 0.96644 1.23760 0.96208 0.92442 1.00821 1.77151 0.98615 1.12100 1.23479 1.49333 1.02397 1.08211 1.48983 1.19852 0.96427 0.70915 0.99404 1.21240 1.47581 0.98140 0.90986 0.91668 1.24927 0.94459 0.95999 0.98250 1.69911 1.44366 1.07229 1.31078 0.86334 0.78733 0.78057 0.83480 1.20220 1.20765 1.19610 0.90101 0.89642 0.90297 0.87449 0.90892 0.91605 0.91604 0.90518 0.90904 0.90310 0.91519 0.91737 0.91717 0.91688 0.90213 0.90352 0.88098 0.91284 0.80674 0.92608 0.92474 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.61 9.33 36.01 0.34 -1.27 16 2 C 0.16 3.14 7.00 -81.60 -0.57 2.57 16 3 C -0.33 -6.00 5.27 -105.07 -0.55 -6.55 16 4 C 0.61 10.35 7.35 -12.52 -0.09 10.26 16 5 O -0.55 -10.56 15.79 5.27 0.08 -10.47 16 6 N -0.62 -8.38 2.89 -173.84 -0.50 -8.89 16 7 C 0.08 0.89 4.82 -3.54 -0.02 0.87 16 8 C 0.07 0.78 3.16 -26.59 -0.08 0.69 16 9 H 0.07 0.80 6.10 -51.93 -0.32 0.49 16 10 C -0.14 -1.28 9.57 37.16 0.36 -0.93 16 11 O -0.36 -4.13 9.85 -35.23 -0.35 -4.48 16 12 C 0.10 1.10 0.82 -89.54 -0.07 1.03 16 13 C -0.15 -1.61 5.70 -24.79 -0.14 -1.75 16 14 C -0.12 -1.10 6.80 -25.00 -0.17 -1.27 16 15 C -0.12 -0.96 6.81 -25.52 -0.17 -1.13 16 16 C -0.11 -0.91 6.13 -25.85 -0.16 -1.07 16 17 C 0.10 1.13 5.18 -3.79 -0.02 1.11 16 18 C 0.05 0.94 9.63 -16.98 -0.16 0.78 16 19 N -0.29 -6.21 12.50 30.86 0.39 -5.82 16 20 N -0.31 -6.93 3.56 -57.77 -0.21 -7.13 16 21 C 0.25 6.15 5.78 -5.20 -0.03 6.12 16 22 C -0.54 -14.21 9.39 -34.44 -0.32 -14.53 16 23 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 24 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 25 N -0.89 -24.25 13.29 55.43 0.74 -23.51 16 26 Si 0.91 20.35 29.54 -169.99 -5.02 15.33 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.08 1.55 7.71 -51.93 -0.40 1.15 16 32 H 0.08 1.30 7.67 -51.93 -0.40 0.91 16 33 H 0.11 1.39 4.87 -51.93 -0.25 1.14 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.89 5.94 -51.93 -0.31 0.58 16 39 H 0.08 0.91 7.90 -51.92 -0.41 0.50 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.59 7.81 -51.93 -0.41 0.18 16 45 H 0.08 0.65 8.07 -51.93 -0.42 0.24 16 46 H 0.10 1.27 6.89 -51.92 -0.36 0.92 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.18 2.38 7.19 -52.49 -0.38 2.00 16 49 H 0.06 1.36 7.64 -51.93 -0.40 0.97 16 50 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 51 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 400.41 15.07 6.03 6.03 Total: -1.00 -29.97 400.41 -9.05 -39.02 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -8.24 Total: 3.32 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -1.98 Total: -3.40 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.41 Total: -45.35 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.26 Total: -14.95 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.97 -9.05 -39.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892299128.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.757 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds