Wall clock time and date at job start Wed Apr 1 2020 07:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38054 * 126.29142 * 2 1 4 4 C 1.47420 * 126.41289 * 0.02562 * 3 2 1 5 5 O 1.21607 * 119.99955 * 321.66880 * 4 3 2 6 6 N 1.34777 * 120.00116 * 141.67402 * 4 3 2 7 7 C 1.47157 * 121.05095 * 354.75190 * 6 4 3 8 8 C 1.53279 * 108.53459 * 231.01496 * 7 6 4 9 9 H 1.09006 * 109.50615 * 67.17083 * 8 7 6 10 10 C 1.53001 * 109.51171 * 187.26581 * 8 7 6 11 11 O 1.43069 * 109.22848 * 307.19754 * 8 7 6 12 12 C 1.42215 * 114.29938 * 61.36836 * 11 8 7 13 13 C 1.54701 * 110.16262 * 61.10511 * 12 11 8 14 14 C 1.54976 * 102.55450 * 81.71003 * 13 12 11 15 15 C 1.54323 * 104.37170 * 37.37548 * 14 13 12 16 16 C 1.53705 * 110.60459 * 176.55638 * 12 11 8 17 17 C 1.47284 * 121.05523 * 174.72900 * 6 4 3 18 18 C 1.41290 * 107.16900 * 179.75672 * 3 2 1 19 19 N 1.30453 * 108.02318 * 0.24595 * 18 3 2 20 20 N 1.34263 * 126.29363 * 180.17916 * 2 1 3 21 21 C 1.46499 * 125.75010 * 359.95599 * 20 2 1 22 22 C 1.50697 * 109.47309 * 270.30940 * 21 20 2 23 23 H 1.07997 * 119.99868 * 0.02562 * 22 21 20 24 24 C 1.37876 * 119.99682 * 180.02562 * 22 21 20 25 25 N 1.31511 * 120.00391 * 359.97438 * 24 22 21 26 26 Si 1.86810 * 119.99847 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47168 * 89.99535 * 26 24 22 28 28 H 1.48494 * 109.46932 * 209.99832 * 26 24 22 29 29 H 1.48501 * 109.46745 * 329.99863 * 26 24 22 30 30 H 1.08997 * 109.47100 * 89.99592 * 1 2 3 31 31 H 1.09000 * 109.47046 * 209.99948 * 1 2 3 32 32 H 1.09001 * 109.47119 * 329.99891 * 1 2 3 33 33 H 1.08997 * 109.62966 * 350.73095 * 7 6 4 34 34 H 1.09002 * 109.62920 * 111.30736 * 7 6 4 35 35 H 1.08993 * 109.46956 * 60.00296 * 10 8 7 36 36 H 1.09006 * 109.46768 * 180.02562 * 10 8 7 37 37 H 1.09000 * 109.47115 * 299.99994 * 10 8 7 38 38 H 1.08999 * 110.90122 * 323.42764 * 13 12 11 39 39 H 1.09007 * 110.77258 * 199.93250 * 13 12 11 40 40 H 1.09004 * 110.47432 * 278.62069 * 14 13 12 41 41 H 1.08998 * 110.48118 * 156.13528 * 14 13 12 42 42 H 1.08994 * 110.03214 * 95.70681 * 15 14 13 43 43 H 1.08996 * 110.03632 * 217.09522 * 15 14 13 44 44 H 1.09001 * 110.05786 * 145.07876 * 16 12 11 45 45 H 1.09001 * 110.05451 * 23.58555 * 16 12 11 46 46 H 1.09007 * 109.67698 * 10.72578 * 17 6 4 47 47 H 1.08993 * 109.71292 * 250.19365 * 17 6 4 48 48 H 1.08001 * 125.98734 * 180.23523 * 18 3 2 49 49 H 1.09000 * 109.47130 * 30.31746 * 21 20 2 50 50 H 1.09006 * 109.46548 * 150.30706 * 21 20 2 51 51 H 0.97001 * 120.00372 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1127 0.0000 4 6 1.8859 2.5203 0.0005 5 8 0.9161 2.8554 -0.6522 6 7 2.5600 3.4358 0.7243 7 6 3.6650 3.0383 1.6112 8 6 3.4203 3.6460 2.9969 9 1 2.5426 3.1828 3.4477 10 6 4.6412 3.4001 3.8857 11 8 3.2029 5.0537 2.8624 12 6 2.0694 5.3982 2.0756 13 6 0.7813 4.8339 2.7204 14 6 0.4586 5.8898 3.8079 15 6 0.8351 7.2374 3.1571 16 6 1.8662 6.9216 2.0577 17 6 2.2145 4.8657 0.6524 18 6 3.6591 0.6499 0.0057 19 7 3.6341 -0.6544 0.0036 20 7 2.3018 -1.0821 -0.0034 21 6 1.8501 -2.4758 -0.0068 22 6 1.6888 -2.9551 1.4127 23 1 1.9011 -2.2882 2.2353 24 6 1.2703 -4.2451 1.6614 25 7 1.0113 -5.0570 0.6598 26 14 1.0696 -4.8391 3.4211 27 1 -0.3155 -4.5654 3.8810 28 1 1.3326 -6.2992 3.4836 29 1 2.0324 -4.1247 4.2974 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 3.6994 1.9516 1.6889 34 1 4.6081 3.4095 1.2101 35 1 5.5181 3.8650 3.4352 36 1 4.4662 3.8321 4.8710 37 1 4.8087 2.3275 3.9842 38 1 0.9671 3.8591 3.1713 39 1 -0.0238 4.7750 1.9879 40 1 1.0611 5.7154 4.6994 41 1 -0.6026 5.8695 4.0561 42 1 -0.0489 7.7000 2.7183 43 1 1.2734 7.9021 3.9015 44 1 1.4852 7.2366 1.0863 45 1 2.8079 7.4269 2.2721 46 1 1.2734 4.9894 0.1164 47 1 3.0053 5.4095 0.1358 48 1 4.5449 1.2677 0.0108 49 1 0.8939 -2.5465 -0.5252 50 1 2.5871 -3.0952 -0.5180 51 1 0.7172 -5.9647 0.8347 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892299128.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:26:38 Heat of formation + Delta-G solvation = -31.992389 kcal Electronic energy + Delta-G solvation = -32215.488746 eV Core-core repulsion = 28115.254672 eV Total energy + Delta-G solvation = -4100.234074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -42.50486 -41.54534 -39.63549 -37.48393 -35.92190 -35.62294 -33.87172 -33.30272 -32.77039 -30.47641 -29.79899 -29.03727 -28.23935 -27.42688 -25.98884 -25.13702 -23.27633 -22.81766 -21.37229 -21.13176 -20.53015 -19.77507 -18.88146 -18.29238 -17.88320 -17.31513 -16.96626 -16.77786 -16.45038 -16.02946 -15.90974 -15.76980 -15.53203 -14.97884 -14.79569 -14.61971 -14.38738 -14.25603 -13.90309 -13.82912 -13.74473 -13.58344 -13.28335 -13.18709 -13.13588 -12.96180 -12.91029 -12.72275 -12.52611 -12.35966 -12.30697 -12.17953 -12.05629 -11.87734 -11.86057 -11.73050 -11.49162 -11.30789 -10.91625 -10.81682 -10.76459 -10.25493 -9.64662 -9.35017 -8.37924 -6.54672 0.70309 1.29055 1.37474 1.38669 1.48515 1.60735 1.90425 2.26383 2.32823 2.60808 2.94311 3.46109 3.55698 3.61206 3.68686 3.74970 3.82433 3.99109 4.02369 4.12557 4.18700 4.24644 4.35402 4.45380 4.46400 4.53230 4.55689 4.59726 4.64259 4.69571 4.75876 4.77453 4.79555 4.83797 4.87312 4.92378 4.94249 5.00726 5.06681 5.10203 5.11284 5.21824 5.26554 5.33490 5.43140 5.48235 5.49202 5.63852 5.74138 6.02596 6.29122 6.31103 6.54536 6.79808 7.16268 7.17117 8.69978 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013796 B = 0.002975 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.128415 B = 9408.941212 C = 9810.720333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.141 3.859 3 C -0.327 4.327 4 C 0.610 3.390 5 O -0.576 6.576 6 N -0.607 5.607 7 C 0.074 3.926 8 C 0.072 3.928 9 H 0.051 0.949 10 C -0.138 4.138 11 O -0.364 6.364 12 C 0.104 3.896 13 C -0.150 4.150 14 C -0.117 4.117 15 C -0.117 4.117 16 C -0.104 4.104 17 C 0.093 3.907 18 C 0.077 3.923 19 N -0.330 5.330 20 N -0.335 5.335 21 C 0.268 3.732 22 C -0.554 4.554 23 H 0.055 0.945 24 C 0.024 3.976 25 N -0.918 5.918 26 Si 0.971 3.029 27 H -0.267 1.267 28 H -0.276 1.276 29 H -0.271 1.271 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.217 0.783 49 H 0.049 0.951 50 H 0.031 0.969 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.997 23.689 5.735 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.005 3.995 3 C -0.342 4.342 4 C 0.400 3.600 5 O -0.457 6.457 6 N -0.339 5.339 7 C -0.049 4.049 8 C 0.014 3.986 9 H 0.069 0.931 10 C -0.195 4.195 11 O -0.284 6.284 12 C 0.064 3.936 13 C -0.188 4.188 14 C -0.155 4.155 15 C -0.155 4.155 16 C -0.142 4.142 17 C -0.029 4.029 18 C -0.110 4.110 19 N -0.150 5.150 20 N -0.112 5.112 21 C 0.149 3.851 22 C -0.592 4.592 23 H 0.073 0.927 24 C -0.178 4.178 25 N -0.556 5.556 26 Si 0.795 3.205 27 H -0.192 1.192 28 H -0.201 1.201 29 H -0.196 1.196 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.103 0.897 46 H 0.110 0.890 47 H 0.105 0.895 48 H 0.234 0.766 49 H 0.067 0.933 50 H 0.049 0.951 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.239 22.564 5.405 23.427 hybrid contribution -0.736 -0.572 0.387 1.010 sum 2.503 21.992 5.792 22.879 Atomic orbital electron populations 1.20463 0.85978 1.03805 1.04042 1.21831 0.95763 0.86541 0.95338 1.19842 0.93558 0.92763 1.28029 1.17235 0.81183 0.83805 0.77787 1.90692 1.28547 1.81354 1.45092 1.47921 1.35119 1.07010 1.43876 1.22813 0.90009 1.02018 0.90077 1.22541 0.99426 0.81992 0.94662 0.93097 1.21707 0.95785 1.02832 0.99198 1.87841 1.46544 1.22664 1.71318 1.22315 0.85761 0.96672 0.88844 1.23065 0.97640 0.98944 0.99139 1.22305 1.01246 0.94483 0.97471 1.22131 0.98857 0.96862 0.97648 1.22073 1.00752 0.90646 1.00750 1.22312 1.03052 0.79818 0.97693 1.24369 0.97253 0.91474 0.97876 1.77106 0.98372 1.13992 1.25507 1.49068 1.03227 1.07679 1.51273 1.19371 0.95193 0.72254 0.98264 1.21387 1.47886 0.98453 0.91467 0.92708 1.25737 0.93856 0.95963 1.02208 1.69999 1.44857 1.07650 1.33052 0.85352 0.78979 0.77625 0.78569 1.19166 1.20057 1.19565 0.89126 0.90652 0.89379 0.88635 0.88457 0.90446 0.91218 0.90203 0.92766 0.91278 0.91976 0.91174 0.90593 0.90723 0.88908 0.89738 0.89043 0.89518 0.76649 0.93328 0.95113 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.05 9.33 71.24 0.66 -2.38 16 2 C 0.14 5.72 7.00 42.14 0.29 6.01 16 3 C -0.33 -11.79 5.27 -20.15 -0.11 -11.90 16 4 C 0.61 20.22 7.35 86.66 0.64 20.86 16 5 O -0.58 -21.96 15.79 -4.05 -0.06 -22.03 16 6 N -0.61 -15.61 2.89 -822.15 -2.38 -17.99 16 7 C 0.07 1.57 4.82 86.35 0.42 1.99 16 8 C 0.07 1.46 3.16 30.69 0.10 1.56 16 9 H 0.05 1.20 6.10 -2.38 -0.01 1.19 16 10 C -0.14 -2.17 9.57 71.98 0.69 -1.48 16 11 O -0.36 -7.49 9.85 -148.98 -1.47 -8.95 16 12 C 0.10 2.01 0.82 -10.09 -0.01 2.00 16 13 C -0.15 -3.18 5.70 31.85 0.18 -3.00 16 14 C -0.12 -1.98 6.80 31.72 0.22 -1.76 16 15 C -0.12 -1.56 6.81 31.38 0.21 -1.35 16 16 C -0.10 -1.49 6.13 31.17 0.19 -1.30 16 17 C 0.09 2.02 5.18 86.11 0.45 2.47 16 18 C 0.08 2.59 9.63 85.65 0.82 3.42 16 19 N -0.33 -14.07 12.50 -56.27 -0.70 -14.77 16 20 N -0.34 -15.30 3.56 -336.69 -1.20 -16.50 16 21 C 0.27 13.68 5.78 85.63 0.49 14.18 16 22 C -0.55 -29.86 9.39 25.60 0.24 -29.62 16 23 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 24 C 0.02 1.26 5.46 84.65 0.46 1.72 16 25 N -0.92 -50.91 13.29 21.45 0.28 -50.63 16 26 Si 0.97 41.78 29.54 68.60 2.03 43.81 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 29 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 30 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.07 2.83 7.71 -2.39 -0.02 2.81 16 32 H 0.09 2.96 7.67 -2.39 -0.02 2.94 16 33 H 0.10 2.31 4.87 -2.39 -0.01 2.29 16 34 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.34 5.94 -2.39 -0.01 1.32 16 39 H 0.07 1.58 7.90 -2.38 -0.02 1.56 16 40 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.09 1.09 7.81 -2.39 -0.02 1.07 16 45 H 0.08 1.14 8.07 -2.39 -0.02 1.12 16 46 H 0.09 2.20 6.89 -2.38 -0.02 2.18 16 47 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.22 5.25 7.19 -2.91 -0.02 5.23 16 49 H 0.05 2.50 7.64 -2.39 -0.02 2.48 16 50 H 0.03 1.70 8.14 -2.38 -0.02 1.68 16 51 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -65.25 400.41 3.38 -61.87 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.92 Total: 23.76 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 5.95 Total: 1.43 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -4.00 Total: -99.89 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -1.53 Total: -30.98 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -65.25 3.38 -61.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892299128.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.875 kcal (2) G-P(sol) polarization free energy of solvation -65.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds