Wall clock time and date at job start Wed Apr 1 2020 07:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38046 * 126.29204 * 2 1 4 4 C 1.47432 * 126.41195 * 359.96161 * 3 2 1 5 5 O 1.21603 * 120.00137 * 359.71659 * 4 3 2 6 6 N 1.34777 * 119.99549 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99724 * 179.72679 * 6 4 3 8 8 H 1.09000 * 109.46989 * 324.99747 * 7 6 4 9 9 C 1.52996 * 109.47130 * 85.00158 * 7 6 4 10 10 C 1.52999 * 117.49803 * 8.74698 * 9 7 6 11 11 C 1.52997 * 117.50041 * 300.08761 * 9 7 6 12 12 C 1.52998 * 109.47085 * 205.00369 * 7 6 4 13 13 H 1.09004 * 109.48237 * 299.98055 * 12 7 6 14 14 C 1.53090 * 109.48359 * 59.99784 * 12 7 6 15 15 C 1.53179 * 109.16577 * 177.58981 * 14 12 7 16 16 C 1.53170 * 109.03650 * 303.02165 * 15 14 12 17 17 C 1.53088 * 109.16413 * 56.98222 * 16 15 14 18 18 O 1.42902 * 109.48329 * 179.97438 * 12 7 6 19 19 C 1.41285 * 107.17066 * 179.70356 * 3 2 1 20 20 N 1.30443 * 108.02583 * 0.26318 * 19 3 2 21 21 N 1.34254 * 126.29293 * 180.15046 * 2 1 3 22 22 C 1.46503 * 125.75484 * 0.03341 * 21 2 1 23 23 C 1.50699 * 109.46810 * 270.29078 * 22 21 2 24 24 H 1.07995 * 120.00444 * 359.97438 * 23 22 21 25 25 C 1.37883 * 119.99870 * 180.02562 * 23 22 21 26 26 N 1.31513 * 119.99743 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99869 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46839 * 60.00169 * 27 25 23 29 29 H 1.48499 * 109.46826 * 179.97438 * 27 25 23 30 30 H 1.48493 * 109.47409 * 299.99641 * 27 25 23 31 31 H 1.09000 * 109.47728 * 90.02291 * 1 2 3 32 32 H 1.08998 * 109.47133 * 210.02927 * 1 2 3 33 33 H 1.09007 * 109.47141 * 330.02066 * 1 2 3 34 34 H 0.97000 * 120.00483 * 359.73112 * 6 4 3 35 35 H 1.08997 * 115.54946 * 154.41554 * 9 7 6 36 36 H 1.08998 * 117.50250 * 0.02562 * 10 9 7 37 37 H 1.09006 * 117.49769 * 145.02271 * 10 9 7 38 38 H 1.09000 * 117.49916 * 214.98105 * 11 9 7 39 39 H 1.09000 * 117.49536 * 359.97438 * 11 9 7 40 40 H 1.08996 * 109.52511 * 297.49957 * 14 12 7 41 41 H 1.09000 * 109.52203 * 57.68778 * 14 12 7 42 42 H 1.09000 * 109.54089 * 62.88830 * 15 14 12 43 43 H 1.08997 * 109.54636 * 183.15015 * 15 14 12 44 44 H 1.09004 * 109.52392 * 176.88263 * 16 15 14 45 45 H 1.08992 * 109.52390 * 297.07326 * 16 15 14 46 46 H 1.09004 * 109.48518 * 62.36785 * 17 16 15 47 47 H 1.08997 * 109.48384 * 182.39553 * 17 16 15 48 48 H 1.08007 * 125.98828 * 180.29348 * 19 3 2 49 49 H 1.08995 * 109.47256 * 30.28793 * 22 21 2 50 50 H 1.09000 * 109.47084 * 150.28884 * 22 21 2 51 51 H 0.97003 * 119.99794 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5203 -0.0008 5 8 0.6995 2.7878 -0.0068 6 7 2.7999 3.5107 -0.0002 7 6 2.3644 4.9095 -0.0070 8 1 1.4553 5.0041 -0.6009 9 6 2.0863 5.3641 1.4272 10 6 2.4909 4.4177 2.5592 11 6 1.0123 4.6084 2.2122 12 6 3.4637 5.7829 -0.6149 13 1 4.3728 5.6887 -0.0210 14 6 3.7421 5.3282 -2.0499 15 6 4.8001 6.2450 -2.6716 16 6 4.3068 7.6936 -2.6062 17 6 4.0067 8.0569 -1.1496 18 8 3.0389 7.1473 -0.6222 19 6 3.6589 0.6499 0.0070 20 7 3.6340 -0.6543 0.0052 21 7 2.3016 -1.0821 -0.0028 22 6 1.8501 -2.4758 -0.0072 23 6 1.6877 -2.9556 1.4121 24 1 1.9001 -2.2893 2.2351 25 6 1.2691 -4.2457 1.6601 26 7 1.0110 -5.0573 0.6580 27 14 1.0685 -4.8406 3.4194 28 1 0.0638 -3.9973 4.1156 29 1 0.6107 -6.2533 3.4150 30 1 2.3709 -4.7442 4.1261 31 1 -0.3634 -0.0004 -1.0276 32 1 -0.3633 -0.8897 0.5143 33 1 -0.3634 0.8902 0.5135 34 1 3.7461 3.2974 0.0047 35 1 2.1820 6.4347 1.6078 36 1 2.9556 3.4714 2.2823 37 1 2.8524 4.8658 3.4848 38 1 0.4016 5.1818 2.9095 39 1 0.5035 3.7876 1.7067 40 1 4.1086 4.3018 -2.0422 41 1 2.8236 5.3836 -2.6342 42 1 5.7340 6.1524 -2.1171 43 1 4.9625 5.9617 -3.7115 44 1 5.0772 8.3588 -2.9961 45 1 3.3997 7.7967 -3.2016 46 1 4.9229 7.9927 -0.5627 47 1 3.6148 9.0729 -1.1017 48 1 4.5448 1.2677 0.0133 49 1 0.8942 -2.5464 -0.5261 50 1 2.5874 -3.0950 -0.5180 51 1 0.7168 -5.9650 0.8324 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892576727.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:38:58 Heat of formation + Delta-G solvation = 0.945086 kcal Electronic energy + Delta-G solvation = -31351.088750 eV Core-core repulsion = 27252.282952 eV Total energy + Delta-G solvation = -4098.805798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -40.92442 -40.19213 -38.92903 -36.77958 -34.31931 -33.91748 -33.76011 -32.17852 -31.57828 -30.98412 -28.12147 -26.96199 -26.44746 -24.74646 -23.51527 -22.86649 -22.26089 -22.06476 -20.59151 -20.26530 -19.65199 -18.96175 -17.29494 -16.80433 -16.74336 -16.28769 -15.99908 -15.46835 -15.08683 -14.92135 -14.65082 -14.59287 -14.44902 -14.25735 -13.86560 -13.59214 -13.17652 -13.06143 -12.76917 -12.63159 -12.50590 -12.44707 -12.07282 -11.90943 -11.77184 -11.51761 -11.46995 -11.44380 -11.27428 -11.13794 -11.10303 -10.88746 -10.70413 -10.38176 -10.25919 -10.13600 -9.96623 -9.85271 -9.70365 -9.38418 -8.87993 -8.71719 -8.60199 -7.93708 -6.34478 -4.42623 2.16469 2.77356 2.91231 3.19668 3.23703 3.26169 3.38684 3.83254 3.91401 3.94783 4.23626 4.30776 4.47850 4.54263 4.60194 4.80761 4.85394 4.98268 5.00958 5.06733 5.11205 5.14956 5.23121 5.24658 5.31164 5.40058 5.49016 5.52605 5.56844 5.64643 5.72212 5.74081 5.78989 5.82699 5.83720 5.94578 6.02539 6.04732 6.09387 6.26538 6.45968 6.53568 6.57638 6.63644 6.77572 6.88646 6.94036 7.14536 7.54886 7.70619 7.76140 7.77916 8.36219 8.59319 8.63303 9.24453 10.73604 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.002420 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.460366 B =11565.176471 C =12238.173793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.168 3.832 3 C -0.333 4.333 4 C 0.609 3.391 5 O -0.547 6.547 6 N -0.726 5.726 7 C 0.190 3.810 8 H 0.098 0.902 9 C -0.165 4.165 10 C -0.179 4.179 11 C -0.182 4.182 12 C 0.091 3.909 13 H 0.063 0.937 14 C -0.151 4.151 15 C -0.122 4.122 16 C -0.158 4.158 17 C 0.063 3.937 18 O -0.371 6.371 19 C 0.056 3.944 20 N -0.295 5.295 21 N -0.314 5.314 22 C 0.251 3.749 23 C -0.542 4.542 24 H 0.065 0.935 25 C 0.068 3.932 26 N -0.889 5.889 27 Si 0.908 3.092 28 H -0.273 1.273 29 H -0.283 1.283 30 H -0.274 1.274 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.397 0.603 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.121 0.879 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.049 0.951 47 H 0.094 0.906 48 H 0.174 0.826 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.121 23.819 -4.321 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.030 3.970 3 C -0.348 4.348 4 C 0.400 3.600 5 O -0.426 6.426 6 N -0.379 5.379 7 C 0.084 3.916 8 H 0.116 0.884 9 C -0.184 4.184 10 C -0.216 4.216 11 C -0.219 4.219 12 C 0.033 3.967 13 H 0.081 0.919 14 C -0.189 4.189 15 C -0.160 4.160 16 C -0.195 4.195 17 C -0.014 4.014 18 O -0.289 6.289 19 C -0.131 4.131 20 N -0.115 5.115 21 N -0.091 5.091 22 C 0.134 3.866 23 C -0.580 4.580 24 H 0.083 0.917 25 C -0.136 4.136 26 N -0.527 5.527 27 Si 0.734 3.266 28 H -0.198 1.198 29 H -0.209 1.209 30 H -0.199 1.199 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.231 0.769 35 H 0.129 0.871 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.139 0.861 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.068 0.932 47 H 0.112 0.888 48 H 0.191 0.809 49 H 0.074 0.926 50 H 0.075 0.925 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.712 22.606 -4.330 23.715 hybrid contribution 0.418 0.166 0.836 0.949 sum 6.129 22.772 -3.494 23.840 Atomic orbital electron populations 1.20618 0.86845 1.04884 1.03271 1.21472 0.94953 0.86485 0.94064 1.19642 0.93100 0.92415 1.29662 1.17235 0.84994 0.83706 0.74079 1.90642 1.16639 1.84184 1.51156 1.45651 1.09790 1.04823 1.77605 1.20109 0.97131 0.79689 0.94639 0.88409 1.22666 1.05819 0.97895 0.92007 1.22941 0.99003 1.01284 0.98376 1.23339 0.91694 1.04043 1.02811 1.22131 0.96754 0.82521 0.95318 0.91941 1.22216 1.00199 1.00053 0.96394 1.21589 0.98330 0.94616 1.01465 1.22202 1.02115 0.97237 0.97992 1.22563 0.92532 0.93361 0.92957 1.87909 1.41863 1.15725 1.83451 1.23699 0.96304 0.92654 1.00417 1.77140 0.98684 1.12254 1.23397 1.49381 1.02461 1.08321 1.48892 1.19845 0.96402 0.70911 0.99411 1.21214 1.47608 0.98157 0.91008 0.91697 1.24923 0.94429 0.95991 0.98278 1.69904 1.44405 1.07239 1.31112 0.86383 0.78908 0.77771 0.83494 1.19807 1.20869 1.19898 0.90525 0.89923 0.88568 0.76895 0.87108 0.88559 0.89654 0.89767 0.86138 0.90369 0.90759 0.91818 0.91358 0.91010 0.90967 0.93239 0.88823 0.80923 0.92566 0.92526 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 9.34 36.00 0.34 -1.41 16 2 C 0.17 3.32 7.01 -81.61 -0.57 2.75 16 3 C -0.33 -5.80 6.13 -105.07 -0.64 -6.45 16 4 C 0.61 9.40 6.65 -12.52 -0.08 9.31 16 5 O -0.55 -9.66 11.87 5.27 0.06 -9.60 16 6 N -0.73 -8.36 2.95 -54.88 -0.16 -8.52 16 7 C 0.19 2.11 2.23 -67.93 -0.15 1.96 16 8 H 0.10 1.31 7.58 -51.93 -0.39 0.92 16 9 C -0.16 -1.89 5.59 -90.62 -0.51 -2.40 16 10 C -0.18 -2.14 9.74 -26.70 -0.26 -2.40 16 11 C -0.18 -2.41 9.82 -26.70 -0.26 -2.67 16 12 C 0.09 0.82 2.27 -26.69 -0.06 0.76 16 13 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 14 C -0.15 -1.25 5.22 -26.59 -0.14 -1.39 16 15 C -0.12 -0.83 6.03 -26.55 -0.16 -0.99 16 16 C -0.16 -1.00 6.14 -26.60 -0.16 -1.16 16 17 C 0.06 0.43 6.84 37.20 0.25 0.69 16 18 O -0.37 -3.59 9.68 -35.23 -0.34 -3.93 16 19 C 0.06 0.94 11.50 -16.98 -0.20 0.75 16 20 N -0.29 -6.20 12.50 30.86 0.39 -5.81 16 21 N -0.31 -6.96 3.56 -57.78 -0.21 -7.17 16 22 C 0.25 6.19 5.78 -5.19 -0.03 6.16 16 23 C -0.54 -14.46 9.39 -34.44 -0.32 -14.79 16 24 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 25 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 26 N -0.89 -24.46 13.29 55.43 0.74 -23.72 16 27 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 30 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 33 H 0.10 1.67 6.51 -51.93 -0.34 1.33 16 34 H 0.40 3.71 7.35 -40.82 -0.30 3.41 16 35 H 0.11 1.23 7.58 -51.93 -0.39 0.83 16 36 H 0.10 1.24 6.67 -51.93 -0.35 0.89 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.12 1.92 5.01 -51.93 -0.26 1.66 16 40 H 0.08 0.63 7.53 -51.93 -0.39 0.24 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.17 2.04 7.50 -52.48 -0.39 1.65 16 49 H 0.06 1.38 7.64 -51.93 -0.40 0.98 16 50 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 51 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 404.73 15.07 6.10 6.10 Total: -1.00 -29.86 404.73 -9.73 -39.59 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -8.23 Total: 6.90 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -3.06 Total: -9.55 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.75 Total: -45.22 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.28 Total: -13.53 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -29.86 -9.73 -39.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892576727.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.539 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds