Wall clock time and date at job start Wed Apr 1 2020 07:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38046 * 126.29204 * 2 1 4 4 C 1.47432 * 126.41195 * 359.96161 * 3 2 1 5 5 O 1.21603 * 120.00137 * 359.71659 * 4 3 2 6 6 N 1.34777 * 119.99549 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99724 * 179.72679 * 6 4 3 8 8 H 1.09000 * 109.46989 * 324.99747 * 7 6 4 9 9 C 1.52996 * 109.47130 * 85.00158 * 7 6 4 10 10 C 1.52999 * 117.49803 * 8.74698 * 9 7 6 11 11 C 1.52997 * 117.50041 * 300.08761 * 9 7 6 12 12 C 1.52998 * 109.47085 * 205.00369 * 7 6 4 13 13 H 1.09004 * 109.48237 * 299.98055 * 12 7 6 14 14 C 1.53090 * 109.48359 * 59.99784 * 12 7 6 15 15 C 1.53179 * 109.16577 * 177.58981 * 14 12 7 16 16 C 1.53170 * 109.03650 * 303.02165 * 15 14 12 17 17 C 1.53088 * 109.16413 * 56.98222 * 16 15 14 18 18 O 1.42902 * 109.48329 * 179.97438 * 12 7 6 19 19 C 1.41285 * 107.17066 * 179.70356 * 3 2 1 20 20 N 1.30443 * 108.02583 * 0.26318 * 19 3 2 21 21 N 1.34254 * 126.29293 * 180.15046 * 2 1 3 22 22 C 1.46503 * 125.75484 * 0.03341 * 21 2 1 23 23 C 1.50699 * 109.46810 * 270.29078 * 22 21 2 24 24 H 1.07995 * 120.00444 * 359.97438 * 23 22 21 25 25 C 1.37883 * 119.99870 * 180.02562 * 23 22 21 26 26 N 1.31513 * 119.99743 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99869 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46839 * 60.00169 * 27 25 23 29 29 H 1.48499 * 109.46826 * 179.97438 * 27 25 23 30 30 H 1.48493 * 109.47409 * 299.99641 * 27 25 23 31 31 H 1.09000 * 109.47728 * 90.02291 * 1 2 3 32 32 H 1.08998 * 109.47133 * 210.02927 * 1 2 3 33 33 H 1.09007 * 109.47141 * 330.02066 * 1 2 3 34 34 H 0.97000 * 120.00483 * 359.73112 * 6 4 3 35 35 H 1.08997 * 115.54946 * 154.41554 * 9 7 6 36 36 H 1.08998 * 117.50250 * 0.02562 * 10 9 7 37 37 H 1.09006 * 117.49769 * 145.02271 * 10 9 7 38 38 H 1.09000 * 117.49916 * 214.98105 * 11 9 7 39 39 H 1.09000 * 117.49536 * 359.97438 * 11 9 7 40 40 H 1.08996 * 109.52511 * 297.49957 * 14 12 7 41 41 H 1.09000 * 109.52203 * 57.68778 * 14 12 7 42 42 H 1.09000 * 109.54089 * 62.88830 * 15 14 12 43 43 H 1.08997 * 109.54636 * 183.15015 * 15 14 12 44 44 H 1.09004 * 109.52392 * 176.88263 * 16 15 14 45 45 H 1.08992 * 109.52390 * 297.07326 * 16 15 14 46 46 H 1.09004 * 109.48518 * 62.36785 * 17 16 15 47 47 H 1.08997 * 109.48384 * 182.39553 * 17 16 15 48 48 H 1.08007 * 125.98828 * 180.29348 * 19 3 2 49 49 H 1.08995 * 109.47256 * 30.28793 * 22 21 2 50 50 H 1.09000 * 109.47084 * 150.28884 * 22 21 2 51 51 H 0.97003 * 119.99794 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5203 -0.0008 5 8 0.6995 2.7878 -0.0068 6 7 2.7999 3.5107 -0.0002 7 6 2.3644 4.9095 -0.0070 8 1 1.4553 5.0041 -0.6009 9 6 2.0863 5.3641 1.4272 10 6 2.4909 4.4177 2.5592 11 6 1.0123 4.6084 2.2122 12 6 3.4637 5.7829 -0.6149 13 1 4.3728 5.6887 -0.0210 14 6 3.7421 5.3282 -2.0499 15 6 4.8001 6.2450 -2.6716 16 6 4.3068 7.6936 -2.6062 17 6 4.0067 8.0569 -1.1496 18 8 3.0389 7.1473 -0.6222 19 6 3.6589 0.6499 0.0070 20 7 3.6340 -0.6543 0.0052 21 7 2.3016 -1.0821 -0.0028 22 6 1.8501 -2.4758 -0.0072 23 6 1.6877 -2.9556 1.4121 24 1 1.9001 -2.2893 2.2351 25 6 1.2691 -4.2457 1.6601 26 7 1.0110 -5.0573 0.6580 27 14 1.0685 -4.8406 3.4194 28 1 0.0638 -3.9973 4.1156 29 1 0.6107 -6.2533 3.4150 30 1 2.3709 -4.7442 4.1261 31 1 -0.3634 -0.0004 -1.0276 32 1 -0.3633 -0.8897 0.5143 33 1 -0.3634 0.8902 0.5135 34 1 3.7461 3.2974 0.0047 35 1 2.1820 6.4347 1.6078 36 1 2.9556 3.4714 2.2823 37 1 2.8524 4.8658 3.4848 38 1 0.4016 5.1818 2.9095 39 1 0.5035 3.7876 1.7067 40 1 4.1086 4.3018 -2.0422 41 1 2.8236 5.3836 -2.6342 42 1 5.7340 6.1524 -2.1171 43 1 4.9625 5.9617 -3.7115 44 1 5.0772 8.3588 -2.9961 45 1 3.3997 7.7967 -3.2016 46 1 4.9229 7.9927 -0.5627 47 1 3.6148 9.0729 -1.1017 48 1 4.5448 1.2677 0.0133 49 1 0.8942 -2.5464 -0.5261 50 1 2.5874 -3.0950 -0.5180 51 1 0.7168 -5.9650 0.8324 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892576727.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:38:55 Heat of formation + Delta-G solvation = -15.529308 kcal Electronic energy + Delta-G solvation = -31351.803133 eV Core-core repulsion = 27252.282952 eV Total energy + Delta-G solvation = -4099.520181 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -42.34801 -41.17045 -39.85787 -37.85766 -35.83120 -35.23521 -34.45803 -33.82489 -32.80399 -32.21040 -29.43621 -28.50420 -27.71133 -25.37391 -25.32324 -23.72340 -23.43628 -23.09183 -21.58157 -21.24807 -20.68487 -20.41877 -18.86809 -18.51481 -17.57958 -17.27813 -17.01942 -16.60653 -16.33336 -16.20229 -16.03323 -15.58798 -15.46217 -15.12063 -15.09729 -14.64586 -14.52837 -14.28049 -14.06967 -13.81000 -13.65399 -13.58883 -13.48229 -13.28420 -13.09303 -12.96229 -12.78130 -12.70717 -12.34792 -12.28788 -12.11436 -11.99844 -11.87581 -11.71417 -11.69684 -11.29870 -11.18514 -10.78267 -10.76286 -10.66700 -10.36909 -10.24954 -9.96316 -9.43441 -8.37985 -6.54437 0.70119 1.33950 1.38521 1.39156 1.47388 1.64138 2.10332 2.32447 2.56015 2.93983 2.98326 3.08346 3.52097 3.75951 3.76627 3.86109 3.97864 4.06166 4.09640 4.13434 4.14779 4.18165 4.23248 4.28255 4.42588 4.53175 4.56976 4.61982 4.66254 4.76227 4.79477 4.84341 4.87525 4.90260 4.93491 4.98193 5.06826 5.09009 5.12920 5.17622 5.19250 5.24600 5.30232 5.42932 5.45150 5.48778 5.59065 5.70183 5.74864 6.05548 6.31407 6.54693 6.64099 6.86876 7.16669 7.40145 8.69595 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.002420 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.460366 B =11565.176471 C =12238.173793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.146 3.854 3 C -0.327 4.327 4 C 0.612 3.388 5 O -0.570 6.570 6 N -0.704 5.704 7 C 0.192 3.808 8 H 0.073 0.927 9 C -0.151 4.151 10 C -0.170 4.170 11 C -0.203 4.203 12 C 0.100 3.900 13 H 0.081 0.919 14 C -0.151 4.151 15 C -0.121 4.121 16 C -0.156 4.156 17 C 0.057 3.943 18 O -0.392 6.392 19 C 0.079 3.921 20 N -0.336 5.336 21 N -0.339 5.339 22 C 0.268 3.732 23 C -0.556 4.556 24 H 0.052 0.948 25 C 0.024 3.976 26 N -0.916 5.916 27 Si 0.969 3.031 28 H -0.267 1.267 29 H -0.273 1.273 30 H -0.272 1.272 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.411 0.589 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.104 0.896 48 H 0.226 0.774 49 H 0.049 0.951 50 H 0.031 0.969 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.945 26.076 -3.588 27.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.011 3.989 3 C -0.343 4.343 4 C 0.402 3.598 5 O -0.451 6.451 6 N -0.357 5.357 7 C 0.087 3.913 8 H 0.091 0.909 9 C -0.170 4.170 10 C -0.207 4.207 11 C -0.240 4.240 12 C 0.041 3.959 13 H 0.098 0.902 14 C -0.188 4.188 15 C -0.158 4.158 16 C -0.194 4.194 17 C -0.019 4.019 18 O -0.311 6.311 19 C -0.108 4.108 20 N -0.155 5.155 21 N -0.116 5.116 22 C 0.150 3.850 23 C -0.594 4.594 24 H 0.070 0.930 25 C -0.177 4.177 26 N -0.554 5.554 27 Si 0.793 3.207 28 H -0.192 1.192 29 H -0.198 1.198 30 H -0.198 1.198 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.248 0.752 35 H 0.139 0.861 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.122 0.878 48 H 0.242 0.758 49 H 0.067 0.933 50 H 0.049 0.951 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.563 24.899 -3.608 26.272 hybrid contribution -0.140 -0.372 0.558 0.685 sum 7.423 24.527 -3.050 25.806 Atomic orbital electron populations 1.20572 0.86112 1.04181 1.03946 1.21933 0.95826 0.86772 0.94406 1.19900 0.93198 0.92904 1.28276 1.16994 0.85057 0.83542 0.74234 1.90648 1.17853 1.84361 1.52214 1.45386 1.09954 1.04440 1.75953 1.20094 0.97287 0.79501 0.94435 0.90899 1.22670 1.04222 0.98269 0.91841 1.22956 0.97563 1.01037 0.99177 1.23272 0.92602 1.04132 1.03996 1.22017 0.96014 0.82178 0.95656 0.90167 1.22205 1.00001 1.00742 0.95890 1.21597 0.98176 0.94388 1.01677 1.22196 1.02179 0.97394 0.97615 1.22767 0.92618 0.93248 0.93264 1.87879 1.43272 1.16033 1.83867 1.24491 0.97625 0.91591 0.97073 1.77094 0.98289 1.14478 1.25659 1.49094 1.03413 1.07699 1.51371 1.19335 0.95197 0.72452 0.98058 1.21367 1.47977 0.98458 0.91600 0.93008 1.25723 0.93856 0.95975 1.02186 1.69988 1.44810 1.07624 1.32992 0.85428 0.78852 0.77682 0.78719 1.19198 1.19776 1.19766 0.89203 0.91392 0.88238 0.75151 0.86087 0.89350 0.88001 0.88961 0.88910 0.90036 0.92621 0.90531 0.91095 0.89224 0.92108 0.91910 0.87789 0.75781 0.93333 0.95063 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.30 9.34 71.23 0.67 -2.64 16 2 C 0.15 5.91 7.01 42.14 0.30 6.20 16 3 C -0.33 -11.16 6.13 -20.15 -0.12 -11.28 16 4 C 0.61 18.34 6.65 86.66 0.58 18.91 16 5 O -0.57 -20.20 11.87 -4.04 -0.05 -20.25 16 6 N -0.70 -14.85 2.95 -445.80 -1.32 -16.17 16 7 C 0.19 3.98 2.23 44.99 0.10 4.08 16 8 H 0.07 1.94 7.58 -2.39 -0.02 1.92 16 9 C -0.15 -3.19 5.59 -10.80 -0.06 -3.25 16 10 C -0.17 -3.70 9.74 30.62 0.30 -3.40 16 11 C -0.20 -5.22 9.82 30.62 0.30 -4.92 16 12 C 0.10 1.54 2.27 30.62 0.07 1.61 16 13 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 14 C -0.15 -2.19 5.22 30.68 0.16 -2.03 16 15 C -0.12 -1.31 6.03 30.71 0.19 -1.12 16 16 C -0.16 -1.58 6.14 30.68 0.19 -1.40 16 17 C 0.06 0.63 6.84 72.01 0.49 1.13 16 18 O -0.39 -6.70 9.68 -148.98 -1.44 -8.14 16 19 C 0.08 2.50 11.50 85.65 0.99 3.48 16 20 N -0.34 -14.07 12.50 -56.28 -0.70 -14.77 16 21 N -0.34 -15.43 3.56 -336.71 -1.20 -16.63 16 22 C 0.27 13.82 5.78 85.63 0.49 14.31 16 23 C -0.56 -30.57 9.39 25.60 0.24 -30.33 16 24 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 25 C 0.02 1.30 5.46 84.66 0.46 1.76 16 26 N -0.92 -51.30 13.29 21.45 0.28 -51.01 16 27 Si 0.97 42.66 29.54 68.60 2.03 44.68 16 28 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 29 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 30 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 31 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.07 2.65 7.71 -2.39 -0.02 2.64 16 33 H 0.10 3.55 6.51 -2.38 -0.02 3.53 16 34 H 0.41 6.31 7.35 -92.71 -0.68 5.63 16 35 H 0.12 2.38 7.58 -2.39 -0.02 2.36 16 36 H 0.09 2.07 6.67 -2.39 -0.02 2.05 16 37 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.09 2.98 5.01 -2.39 -0.01 2.97 16 40 H 0.08 1.11 7.53 -2.39 -0.02 1.09 16 41 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 45 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.23 4.37 7.50 -2.91 -0.02 4.35 16 49 H 0.05 2.52 7.64 -2.39 -0.02 2.50 16 50 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -66.70 404.73 3.19 -63.51 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.26 Total: 27.67 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 5.33 Total: -8.89 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -2.93 Total: -98.58 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.49 Total: -28.39 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -66.70 3.19 -63.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892576727.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.981 kcal (2) G-P(sol) polarization free energy of solvation -66.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds