Wall clock time and date at job start Wed Apr 1 2020 07:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38047 * 126.29145 * 2 1 4 4 C 1.47433 * 126.41304 * 359.94107 * 3 2 1 5 5 O 1.21599 * 119.99799 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99736 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00112 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.46749 * 35.00357 * 7 6 4 9 9 C 1.53001 * 109.47479 * 275.00653 * 7 6 4 10 10 C 1.52999 * 117.50023 * 128.61745 * 9 7 6 11 11 C 1.52998 * 117.49729 * 59.99401 * 9 7 6 12 12 C 1.53000 * 109.47257 * 155.00299 * 7 6 4 13 13 H 1.08993 * 109.48195 * 60.00025 * 12 7 6 14 14 C 1.53094 * 109.47919 * 299.97902 * 12 7 6 15 15 C 1.53181 * 109.16294 * 182.40947 * 14 12 7 16 16 C 1.53176 * 109.03637 * 56.97853 * 15 14 12 17 17 C 1.53089 * 109.16687 * 303.02514 * 16 15 14 18 18 O 1.42897 * 109.42598 * 57.60014 * 17 16 15 19 19 C 1.41286 * 107.16983 * 179.97438 * 3 2 1 20 20 N 1.30448 * 108.02539 * 359.97438 * 19 3 2 21 21 N 1.34257 * 126.29224 * 179.68480 * 2 1 3 22 22 C 1.46498 * 125.75316 * 0.02562 * 21 2 1 23 23 C 1.50700 * 109.47430 * 89.99646 * 22 21 2 24 24 H 1.08005 * 119.99720 * 359.97438 * 23 22 21 25 25 C 1.37873 * 120.00381 * 179.97438 * 23 22 21 26 26 N 1.31513 * 120.00185 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 120.00207 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46975 * 0.02562 * 27 25 23 29 29 H 1.48502 * 109.46873 * 120.00006 * 27 25 23 30 30 H 1.48490 * 109.47249 * 240.00207 * 27 25 23 31 31 H 1.09002 * 109.47152 * 90.02476 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.02576 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.02557 * 1 2 3 34 34 H 0.97000 * 120.00464 * 0.02562 * 6 4 3 35 35 H 1.09002 * 115.54738 * 274.32901 * 9 7 6 36 36 H 1.09003 * 117.49947 * 0.02562 * 10 9 7 37 37 H 1.09004 * 117.49762 * 145.02001 * 10 9 7 38 38 H 1.08996 * 117.49839 * 214.98026 * 11 9 7 39 39 H 1.08996 * 117.50050 * 359.97438 * 11 9 7 40 40 H 1.08995 * 109.52280 * 302.31473 * 14 12 7 41 41 H 1.09002 * 109.52466 * 62.43914 * 14 12 7 42 42 H 1.09002 * 109.54374 * 176.84621 * 15 14 12 43 43 H 1.09000 * 109.54216 * 297.11402 * 15 14 12 44 44 H 1.09010 * 109.52162 * 62.92988 * 16 15 14 45 45 H 1.08998 * 109.52392 * 183.04607 * 16 15 14 46 46 H 1.09004 * 109.48338 * 177.58910 * 17 16 15 47 47 H 1.09000 * 109.48035 * 297.61090 * 17 16 15 48 48 H 1.08000 * 125.98547 * 180.02562 * 19 3 2 49 49 H 1.08998 * 109.47093 * 209.99817 * 22 21 2 50 50 H 1.09004 * 109.47379 * 329.99619 * 22 21 2 51 51 H 0.97000 * 120.00259 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0012 5 8 0.6996 2.7877 -0.0019 6 7 2.7999 3.5107 -0.0005 7 6 2.3644 4.9095 -0.0023 8 1 1.4518 5.0066 0.5857 9 6 2.0949 5.3580 -1.4401 10 6 0.7475 6.0211 -1.7324 11 6 1.0241 4.6001 -2.2275 12 6 3.4602 5.7855 0.6083 13 1 4.3729 5.6885 0.0205 14 6 3.7295 5.3373 2.0471 15 6 4.7839 6.2567 2.6711 16 6 4.2913 7.7051 2.5960 17 6 4.0001 8.0619 1.1360 18 8 3.0353 7.1500 0.6073 19 6 3.6590 0.6499 0.0006 20 7 3.6341 -0.6544 0.0015 21 7 2.3017 -1.0821 0.0060 22 6 1.8501 -2.4757 0.0131 23 6 1.6957 -2.9611 -1.4052 24 1 1.9119 -2.2976 -2.2296 25 6 1.2784 -4.2520 -1.6506 26 7 1.0146 -5.0598 -0.6469 27 14 1.0863 -4.8534 -3.4087 28 1 1.4421 -3.7593 -4.3477 29 1 1.9859 -6.0127 -3.6364 30 1 -0.3213 -5.2663 -3.6396 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3633 0.8902 0.5134 33 1 -0.3633 -0.8898 0.5142 34 1 3.7461 3.2974 0.0004 35 1 2.9638 5.7186 -1.9907 36 1 0.0531 6.1383 -0.9003 37 1 0.7296 6.8185 -2.4754 38 1 1.1883 4.4626 -3.2962 39 1 0.5120 3.7818 -1.7214 40 1 2.8075 5.3954 2.6254 41 1 4.0949 4.3103 2.0465 42 1 4.9398 5.9782 3.7134 43 1 5.7212 6.1615 2.1228 44 1 3.3804 7.8111 3.1855 45 1 5.0589 8.3719 2.9888 46 1 3.6084 9.0776 1.0811 47 1 4.9199 7.9951 0.5551 48 1 4.5449 1.2677 0.0012 49 1 2.5846 -3.0930 0.5304 50 1 0.8913 -2.5444 0.5270 51 1 0.7214 -5.9682 -0.8195 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892576730.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:39:16 Heat of formation + Delta-G solvation = -2.128396 kcal Electronic energy + Delta-G solvation = -31191.926056 eV Core-core repulsion = 27092.986981 eV Total energy + Delta-G solvation = -4098.939074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.86440 -40.13408 -38.81424 -36.84409 -34.48493 -33.90503 -33.79858 -32.16519 -31.52379 -30.97861 -28.09050 -26.92754 -26.40958 -24.69471 -23.52474 -22.81884 -22.17546 -22.00835 -20.77060 -20.25157 -19.83394 -18.96641 -17.29245 -16.78571 -16.67593 -16.22546 -15.74474 -15.44942 -15.09746 -15.00890 -14.81068 -14.54164 -14.37866 -14.32714 -13.85159 -13.62671 -13.20591 -13.01338 -12.87498 -12.60453 -12.43841 -12.40608 -12.10229 -11.92922 -11.77733 -11.48889 -11.46200 -11.37085 -11.24708 -11.10316 -11.06852 -10.91131 -10.67539 -10.37700 -10.24982 -10.15187 -10.02116 -9.91468 -9.70871 -9.36524 -8.85907 -8.72048 -8.59023 -7.91541 -6.34241 -4.41884 2.18490 2.79023 2.90113 3.16680 3.24724 3.28576 3.40285 3.75005 3.92742 4.14011 4.24062 4.28785 4.48052 4.54505 4.60212 4.79689 4.84791 4.97992 5.00059 5.06669 5.11431 5.18923 5.23635 5.24241 5.28668 5.40269 5.41026 5.51664 5.57415 5.60563 5.72188 5.74140 5.79124 5.80726 5.82986 5.93227 6.00486 6.09173 6.13448 6.25261 6.40809 6.50022 6.57886 6.62959 6.79767 6.90345 6.96101 7.15574 7.55944 7.73534 7.76687 7.79095 8.37561 8.61688 8.64689 9.25154 10.74022 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018523 B = 0.002391 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.243147 B =11706.930517 C =12522.104268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.166 3.834 3 C -0.332 4.332 4 C 0.611 3.389 5 O -0.550 6.550 6 N -0.724 5.724 7 C 0.189 3.811 8 H 0.095 0.905 9 C -0.161 4.161 10 C -0.163 4.163 11 C -0.183 4.183 12 C 0.091 3.909 13 H 0.061 0.939 14 C -0.151 4.151 15 C -0.122 4.122 16 C -0.158 4.158 17 C 0.062 3.938 18 O -0.367 6.367 19 C 0.057 3.943 20 N -0.296 5.296 21 N -0.314 5.314 22 C 0.251 3.749 23 C -0.539 4.539 24 H 0.066 0.934 25 C 0.067 3.933 26 N -0.890 5.890 27 Si 0.907 3.093 28 H -0.271 1.271 29 H -0.280 1.280 30 H -0.280 1.280 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.396 0.604 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.122 0.878 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.049 0.951 48 H 0.174 0.826 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.664 24.283 4.494 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.029 3.971 3 C -0.347 4.347 4 C 0.402 3.598 5 O -0.430 6.430 6 N -0.376 5.376 7 C 0.084 3.916 8 H 0.113 0.887 9 C -0.180 4.180 10 C -0.201 4.201 11 C -0.220 4.220 12 C 0.032 3.968 13 H 0.079 0.921 14 C -0.189 4.189 15 C -0.160 4.160 16 C -0.196 4.196 17 C -0.015 4.015 18 O -0.285 6.285 19 C -0.130 4.130 20 N -0.116 5.116 21 N -0.091 5.091 22 C 0.134 3.866 23 C -0.577 4.577 24 H 0.084 0.916 25 C -0.137 4.137 26 N -0.527 5.527 27 Si 0.734 3.266 28 H -0.195 1.195 29 H -0.206 1.206 30 H -0.205 1.205 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.230 0.770 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.140 0.860 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.112 0.888 47 H 0.067 0.933 48 H 0.191 0.809 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.265 23.076 4.498 24.092 hybrid contribution 0.465 0.126 -0.873 0.998 sum 5.730 23.202 3.625 24.173 Atomic orbital electron populations 1.20575 0.86815 1.03792 1.03926 1.21473 0.94942 0.86520 0.94164 1.19637 0.93075 0.92416 1.29584 1.17207 0.84970 0.83677 0.73966 1.90629 1.16689 1.84214 1.51458 1.45608 1.09747 1.04671 1.77572 1.20158 0.97374 0.79860 0.94230 0.88657 1.22472 0.93506 1.05594 0.96429 1.22801 0.98165 0.95947 1.03178 1.23327 1.02539 0.96529 0.99606 1.22154 0.96566 0.82726 0.95317 0.92100 1.22219 1.00244 1.00075 0.96350 1.21589 0.98335 0.94614 1.01448 1.22207 1.02124 0.97221 0.98008 1.22560 0.92621 0.93412 0.92864 1.87947 1.41847 1.15433 1.83249 1.23702 0.96332 0.92633 1.00341 1.77140 0.98645 1.12269 1.23501 1.49364 1.02481 1.08308 1.48921 1.19855 0.96398 0.70930 0.99463 1.21282 1.47291 0.98085 0.91033 0.91617 1.24924 0.94461 0.96041 0.98267 1.69919 1.44601 1.07265 1.30931 0.86276 0.77973 0.78865 0.83459 1.19517 1.20577 1.20535 0.89841 0.88759 0.90934 0.77008 0.88465 0.88915 0.89480 0.89809 0.86017 0.90787 0.90355 0.91356 0.91826 0.90989 0.91029 0.88832 0.93311 0.80899 0.92540 0.92554 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.65 9.57 36.01 0.34 -1.31 16 2 C 0.17 3.31 7.01 -81.60 -0.57 2.74 16 3 C -0.33 -5.84 6.13 -105.06 -0.64 -6.48 16 4 C 0.61 9.53 7.14 -12.52 -0.09 9.44 16 5 O -0.55 -9.72 11.87 5.28 0.06 -9.66 16 6 N -0.72 -8.49 4.40 -54.88 -0.24 -8.73 16 7 C 0.19 2.11 2.07 -67.93 -0.14 1.97 16 8 H 0.10 1.28 7.33 -51.93 -0.38 0.90 16 9 C -0.16 -1.85 5.02 -90.62 -0.45 -2.30 16 10 C -0.16 -1.88 10.18 -26.73 -0.27 -2.16 16 11 C -0.18 -2.41 9.73 -26.73 -0.26 -2.67 16 12 C 0.09 0.82 2.26 -26.68 -0.06 0.76 16 13 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 14 C -0.15 -1.26 5.22 -26.59 -0.14 -1.40 16 15 C -0.12 -0.83 6.03 -26.55 -0.16 -0.99 16 16 C -0.16 -1.01 6.14 -26.59 -0.16 -1.17 16 17 C 0.06 0.44 6.84 37.20 0.25 0.69 16 18 O -0.37 -3.58 10.04 -35.23 -0.35 -3.93 16 19 C 0.06 0.96 11.50 -16.98 -0.20 0.77 16 20 N -0.30 -6.25 12.50 30.86 0.39 -5.86 16 21 N -0.31 -7.00 3.56 -57.77 -0.21 -7.20 16 22 C 0.25 6.19 5.97 -5.19 -0.03 6.16 16 23 C -0.54 -14.44 9.39 -34.44 -0.32 -14.76 16 24 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 25 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 26 N -0.89 -24.52 13.29 55.43 0.74 -23.79 16 27 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 30 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.09 1.59 6.50 -51.93 -0.34 1.25 16 33 H 0.07 1.26 7.04 -51.93 -0.37 0.90 16 34 H 0.40 3.75 7.35 -40.82 -0.30 3.45 16 35 H 0.10 1.05 8.11 -51.93 -0.42 0.62 16 36 H 0.09 1.11 8.05 -51.93 -0.42 0.69 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.12 1.93 5.01 -51.93 -0.26 1.67 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.64 7.53 -51.93 -0.39 0.25 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.17 2.07 7.50 -52.49 -0.39 1.67 16 49 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 50 H 0.06 1.38 7.01 -51.93 -0.36 1.02 16 51 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 407.43 15.07 6.14 6.14 Total: -1.00 -30.15 407.43 -9.75 -39.90 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -8.25 Total: 6.38 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -3.00 Total: -9.01 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.68 Total: -45.58 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.29 Total: -13.59 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.15 -9.75 -39.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892576730.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.772 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds