Wall clock time and date at job start Wed Apr 1 2020 07:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38047 * 126.29145 * 2 1 4 4 C 1.47433 * 126.41304 * 359.94107 * 3 2 1 5 5 O 1.21599 * 119.99799 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99736 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00112 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.46749 * 35.00357 * 7 6 4 9 9 C 1.53001 * 109.47479 * 275.00653 * 7 6 4 10 10 C 1.52999 * 117.50023 * 128.61745 * 9 7 6 11 11 C 1.52998 * 117.49729 * 59.99401 * 9 7 6 12 12 C 1.53000 * 109.47257 * 155.00299 * 7 6 4 13 13 H 1.08993 * 109.48195 * 60.00025 * 12 7 6 14 14 C 1.53094 * 109.47919 * 299.97902 * 12 7 6 15 15 C 1.53181 * 109.16294 * 182.40947 * 14 12 7 16 16 C 1.53176 * 109.03637 * 56.97853 * 15 14 12 17 17 C 1.53089 * 109.16687 * 303.02514 * 16 15 14 18 18 O 1.42897 * 109.42598 * 57.60014 * 17 16 15 19 19 C 1.41286 * 107.16983 * 179.97438 * 3 2 1 20 20 N 1.30448 * 108.02539 * 359.97438 * 19 3 2 21 21 N 1.34257 * 126.29224 * 179.68480 * 2 1 3 22 22 C 1.46498 * 125.75316 * 0.02562 * 21 2 1 23 23 C 1.50700 * 109.47430 * 89.99646 * 22 21 2 24 24 H 1.08005 * 119.99720 * 359.97438 * 23 22 21 25 25 C 1.37873 * 120.00381 * 179.97438 * 23 22 21 26 26 N 1.31513 * 120.00185 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 120.00207 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46975 * 0.02562 * 27 25 23 29 29 H 1.48502 * 109.46873 * 120.00006 * 27 25 23 30 30 H 1.48490 * 109.47249 * 240.00207 * 27 25 23 31 31 H 1.09002 * 109.47152 * 90.02476 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.02576 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.02557 * 1 2 3 34 34 H 0.97000 * 120.00464 * 0.02562 * 6 4 3 35 35 H 1.09002 * 115.54738 * 274.32901 * 9 7 6 36 36 H 1.09003 * 117.49947 * 0.02562 * 10 9 7 37 37 H 1.09004 * 117.49762 * 145.02001 * 10 9 7 38 38 H 1.08996 * 117.49839 * 214.98026 * 11 9 7 39 39 H 1.08996 * 117.50050 * 359.97438 * 11 9 7 40 40 H 1.08995 * 109.52280 * 302.31473 * 14 12 7 41 41 H 1.09002 * 109.52466 * 62.43914 * 14 12 7 42 42 H 1.09002 * 109.54374 * 176.84621 * 15 14 12 43 43 H 1.09000 * 109.54216 * 297.11402 * 15 14 12 44 44 H 1.09010 * 109.52162 * 62.92988 * 16 15 14 45 45 H 1.08998 * 109.52392 * 183.04607 * 16 15 14 46 46 H 1.09004 * 109.48338 * 177.58910 * 17 16 15 47 47 H 1.09000 * 109.48035 * 297.61090 * 17 16 15 48 48 H 1.08000 * 125.98547 * 180.02562 * 19 3 2 49 49 H 1.08998 * 109.47093 * 209.99817 * 22 21 2 50 50 H 1.09004 * 109.47379 * 329.99619 * 22 21 2 51 51 H 0.97000 * 120.00259 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0012 5 8 0.6996 2.7877 -0.0019 6 7 2.7999 3.5107 -0.0005 7 6 2.3644 4.9095 -0.0023 8 1 1.4518 5.0066 0.5857 9 6 2.0949 5.3580 -1.4401 10 6 0.7475 6.0211 -1.7324 11 6 1.0241 4.6001 -2.2275 12 6 3.4602 5.7855 0.6083 13 1 4.3729 5.6885 0.0205 14 6 3.7295 5.3373 2.0471 15 6 4.7839 6.2567 2.6711 16 6 4.2913 7.7051 2.5960 17 6 4.0001 8.0619 1.1360 18 8 3.0353 7.1500 0.6073 19 6 3.6590 0.6499 0.0006 20 7 3.6341 -0.6544 0.0015 21 7 2.3017 -1.0821 0.0060 22 6 1.8501 -2.4757 0.0131 23 6 1.6957 -2.9611 -1.4052 24 1 1.9119 -2.2976 -2.2296 25 6 1.2784 -4.2520 -1.6506 26 7 1.0146 -5.0598 -0.6469 27 14 1.0863 -4.8534 -3.4087 28 1 1.4421 -3.7593 -4.3477 29 1 1.9859 -6.0127 -3.6364 30 1 -0.3213 -5.2663 -3.6396 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3633 0.8902 0.5134 33 1 -0.3633 -0.8898 0.5142 34 1 3.7461 3.2974 0.0004 35 1 2.9638 5.7186 -1.9907 36 1 0.0531 6.1383 -0.9003 37 1 0.7296 6.8185 -2.4754 38 1 1.1883 4.4626 -3.2962 39 1 0.5120 3.7818 -1.7214 40 1 2.8075 5.3954 2.6254 41 1 4.0949 4.3103 2.0465 42 1 4.9398 5.9782 3.7134 43 1 5.7212 6.1615 2.1228 44 1 3.3804 7.8111 3.1855 45 1 5.0589 8.3719 2.9888 46 1 3.6084 9.0776 1.0811 47 1 4.9199 7.9951 0.5551 48 1 4.5449 1.2677 0.0012 49 1 2.5846 -3.0930 0.5304 50 1 0.8913 -2.5444 0.5270 51 1 0.7214 -5.9682 -0.8195 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892576730.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:39:15 Heat of formation + Delta-G solvation = -19.454934 kcal Electronic energy + Delta-G solvation = -31192.677391 eV Core-core repulsion = 27092.986981 eV Total energy + Delta-G solvation = -4099.690409 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.31713 -41.05903 -39.79446 -37.87990 -35.84037 -35.43820 -34.45695 -33.83144 -32.77834 -32.16090 -29.44002 -28.47913 -27.64994 -25.37864 -25.27205 -23.74976 -23.24890 -23.07422 -21.66232 -21.37090 -20.79321 -20.45032 -18.87081 -18.51584 -17.51105 -17.19531 -16.82850 -16.57281 -16.40121 -16.14271 -16.02386 -15.74049 -15.43205 -15.31975 -14.98105 -14.69260 -14.53004 -14.26252 -14.05472 -13.82818 -13.67319 -13.58537 -13.53893 -13.14183 -13.06742 -12.97379 -12.77403 -12.71201 -12.34055 -12.25250 -12.11557 -11.95494 -11.82948 -11.70439 -11.69037 -11.28730 -11.18340 -10.92405 -10.76728 -10.67610 -10.35650 -10.24844 -9.94582 -9.41769 -8.38217 -6.54297 0.71198 1.34653 1.35767 1.39468 1.49329 1.64381 2.08497 2.32281 2.57042 2.93888 2.96448 3.22643 3.49428 3.76328 3.77636 3.86270 3.97922 4.05351 4.11876 4.13707 4.15288 4.19145 4.23744 4.28637 4.39685 4.47168 4.55831 4.60185 4.64866 4.71398 4.79252 4.83864 4.87868 4.90435 4.92955 4.98517 5.07690 5.10322 5.11902 5.17832 5.19576 5.24518 5.33071 5.42561 5.43740 5.49468 5.57972 5.71025 5.74994 6.05984 6.33400 6.55157 6.66665 6.87561 7.16842 7.42224 8.69845 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018523 B = 0.002391 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.243147 B =11706.930517 C =12522.104268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.145 3.855 3 C -0.327 4.327 4 C 0.613 3.387 5 O -0.572 6.572 6 N -0.703 5.703 7 C 0.191 3.809 8 H 0.070 0.930 9 C -0.151 4.151 10 C -0.156 4.156 11 C -0.200 4.200 12 C 0.098 3.902 13 H 0.081 0.919 14 C -0.151 4.151 15 C -0.121 4.121 16 C -0.156 4.156 17 C 0.057 3.943 18 O -0.387 6.387 19 C 0.079 3.921 20 N -0.336 5.336 21 N -0.339 5.339 22 C 0.267 3.733 23 C -0.553 4.553 24 H 0.051 0.949 25 C 0.023 3.977 26 N -0.917 5.917 27 Si 0.971 3.029 28 H -0.273 1.273 29 H -0.273 1.273 30 H -0.269 1.269 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.411 0.589 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.089 0.911 46 H 0.103 0.897 47 H 0.062 0.938 48 H 0.226 0.774 49 H 0.031 0.969 50 H 0.050 0.950 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.453 26.537 3.714 27.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.009 3.991 3 C -0.342 4.342 4 C 0.402 3.598 5 O -0.453 6.453 6 N -0.356 5.356 7 C 0.087 3.913 8 H 0.088 0.912 9 C -0.170 4.170 10 C -0.193 4.193 11 C -0.237 4.237 12 C 0.040 3.960 13 H 0.098 0.902 14 C -0.189 4.189 15 C -0.158 4.158 16 C -0.194 4.194 17 C -0.019 4.019 18 O -0.306 6.306 19 C -0.108 4.108 20 N -0.156 5.156 21 N -0.116 5.116 22 C 0.148 3.852 23 C -0.591 4.591 24 H 0.069 0.931 25 C -0.178 4.178 26 N -0.555 5.555 27 Si 0.795 3.205 28 H -0.197 1.197 29 H -0.198 1.198 30 H -0.194 1.194 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.248 0.752 35 H 0.132 0.868 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.107 0.893 46 H 0.121 0.879 47 H 0.080 0.920 48 H 0.243 0.757 49 H 0.049 0.951 50 H 0.068 0.932 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.079 25.365 3.732 26.598 hybrid contribution -0.080 -0.412 -0.579 0.715 sum 6.998 24.953 3.154 26.107 Atomic orbital electron populations 1.20542 0.86046 1.03973 1.03821 1.21941 0.95839 0.86785 0.94493 1.19910 0.93195 0.92935 1.28187 1.16978 0.85068 0.83525 0.74180 1.90634 1.17863 1.84383 1.52457 1.45355 1.09944 1.04337 1.75920 1.20150 0.97488 0.79619 0.94092 0.91189 1.22556 0.93822 1.04498 0.96172 1.22825 0.98049 0.95398 1.03077 1.23199 1.04120 0.96598 0.99814 1.22055 0.95920 0.82364 0.95663 0.90161 1.22207 1.00013 1.00765 0.95875 1.21597 0.98199 0.94367 1.01653 1.22199 1.02167 0.97390 0.97629 1.22758 0.92718 0.93271 0.93175 1.87916 1.43259 1.15756 1.83666 1.24501 0.97665 0.91579 0.97017 1.77092 0.98271 1.14491 1.25754 1.49086 1.03431 1.07707 1.51380 1.19352 0.95247 0.72455 0.98101 1.21410 1.47740 0.98389 0.91573 0.93080 1.25724 0.93876 0.96026 1.02184 1.69998 1.44957 1.07714 1.32822 0.85308 0.78438 0.78199 0.78565 1.19731 1.19820 1.19393 0.90041 0.87921 0.91263 0.75225 0.86779 0.89828 0.87698 0.89325 0.88848 0.92699 0.90027 0.91105 0.90508 0.92152 0.89253 0.87855 0.91961 0.75732 0.95061 0.93249 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.15 9.57 71.24 0.68 -2.47 16 2 C 0.15 5.89 7.01 42.14 0.30 6.18 16 3 C -0.33 -11.26 6.13 -20.15 -0.12 -11.38 16 4 C 0.61 18.59 7.14 86.67 0.62 19.21 16 5 O -0.57 -20.33 11.87 -4.03 -0.05 -20.38 16 6 N -0.70 -15.08 4.40 -445.80 -1.96 -17.04 16 7 C 0.19 3.98 2.07 44.99 0.09 4.07 16 8 H 0.07 1.86 7.33 -2.39 -0.02 1.84 16 9 C -0.15 -3.19 5.02 -10.79 -0.05 -3.24 16 10 C -0.16 -3.41 10.18 30.59 0.31 -3.10 16 11 C -0.20 -5.13 9.73 30.59 0.30 -4.83 16 12 C 0.10 1.53 2.26 30.63 0.07 1.60 16 13 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 14 C -0.15 -2.21 5.22 30.69 0.16 -2.05 16 15 C -0.12 -1.31 6.03 30.71 0.19 -1.12 16 16 C -0.16 -1.60 6.14 30.68 0.19 -1.41 16 17 C 0.06 0.64 6.84 72.01 0.49 1.13 16 18 O -0.39 -6.66 10.04 -148.98 -1.50 -8.16 16 19 C 0.08 2.53 11.50 85.65 0.99 3.51 16 20 N -0.34 -14.20 12.50 -56.28 -0.70 -14.90 16 21 N -0.34 -15.53 3.56 -336.70 -1.20 -16.73 16 22 C 0.27 13.79 5.97 85.63 0.51 14.30 16 23 C -0.55 -30.50 9.39 25.60 0.24 -30.26 16 24 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 25 C 0.02 1.26 5.46 84.65 0.46 1.72 16 26 N -0.92 -51.35 13.29 21.45 0.28 -51.06 16 27 Si 0.97 42.80 29.54 68.60 2.03 44.82 16 28 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 29 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 30 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 31 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.10 3.55 6.50 -2.39 -0.02 3.53 16 33 H 0.07 2.53 7.04 -2.38 -0.02 2.52 16 34 H 0.41 6.36 7.35 -92.71 -0.68 5.68 16 35 H 0.11 2.07 8.11 -2.39 -0.02 2.05 16 36 H 0.08 1.98 8.05 -2.39 -0.02 1.96 16 37 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.09 3.00 5.01 -2.39 -0.01 2.99 16 40 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 1.12 7.53 -2.39 -0.02 1.10 16 42 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.23 4.44 7.50 -2.91 -0.02 4.42 16 49 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.05 2.56 7.01 -2.38 -0.02 2.54 16 51 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -67.23 407.43 2.58 -64.66 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.26 Total: 26.94 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 5.41 Total: -8.15 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -3.58 Total: -99.73 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -1.54 Total: -28.54 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -67.23 2.58 -64.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892576730.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.203 kcal (2) G-P(sol) polarization free energy of solvation -67.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds