Wall clock time and date at job start Wed Apr 1 2020 07:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38041 * 126.29113 * 2 1 4 4 C 1.47431 * 126.41500 * 0.02900 * 3 2 1 5 5 O 1.21598 * 120.00152 * 0.28383 * 4 3 2 6 6 N 1.34784 * 119.99840 * 180.27928 * 4 3 2 7 7 C 1.46501 * 119.99775 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.47281 * 345.23011 * 7 6 4 9 9 C 1.52998 * 109.46929 * 105.22690 * 7 6 4 10 10 C 1.53779 * 113.61527 * 37.49678 * 9 7 6 11 11 C 1.53777 * 87.08082 * 220.01775 * 10 9 7 12 12 C 1.53775 * 87.08247 * 25.43455 * 11 10 9 13 13 C 1.52995 * 109.47045 * 225.22608 * 7 6 4 14 14 H 1.09000 * 110.80928 * 299.42209 * 13 7 6 15 15 C 1.54814 * 110.90870 * 175.79189 * 13 7 6 16 16 C 1.54097 * 104.18887 * 220.92189 * 15 13 7 17 17 O 1.43742 * 107.29622 * 357.97265 * 16 15 13 18 18 C 1.44377 * 106.97358 * 26.50830 * 17 16 15 19 19 C 1.41294 * 107.16934 * 180.24442 * 3 2 1 20 20 N 1.30443 * 108.02398 * 359.78200 * 19 3 2 21 21 N 1.34252 * 126.29055 * 179.87010 * 2 1 3 22 22 C 1.46503 * 125.75697 * 0.02562 * 21 2 1 23 23 C 1.50705 * 109.46832 * 269.71415 * 22 21 2 24 24 H 1.07996 * 120.00152 * 0.02562 * 23 22 21 25 25 C 1.37882 * 119.99919 * 179.97438 * 23 22 21 26 26 N 1.31508 * 120.00139 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 119.99722 * 0.02562 * 25 23 22 28 28 H 1.48493 * 109.47558 * 89.99535 * 27 25 23 29 29 H 1.48502 * 109.46955 * 209.99595 * 27 25 23 30 30 H 1.48506 * 109.47376 * 329.98863 * 27 25 23 31 31 H 1.08999 * 109.47196 * 270.12907 * 1 2 3 32 32 H 1.09000 * 109.46947 * 30.13153 * 1 2 3 33 33 H 1.09002 * 109.47365 * 150.12778 * 1 2 3 34 34 H 0.96993 * 119.99884 * 0.02562 * 6 4 3 35 35 H 1.08994 * 112.85133 * 168.80408 * 9 7 6 36 36 H 1.09003 * 113.61626 * 334.56780 * 10 9 7 37 37 H 1.08999 * 113.61650 * 105.46692 * 10 9 7 38 38 H 1.08994 * 113.61954 * 270.88043 * 11 10 9 39 39 H 1.09014 * 113.61309 * 139.97937 * 11 10 9 40 40 H 1.08998 * 113.61233 * 220.02008 * 12 11 10 41 41 H 1.08995 * 113.69516 * 89.12865 * 12 11 10 42 42 H 1.09003 * 110.48607 * 339.60176 * 15 13 7 43 43 H 1.09002 * 110.48730 * 102.11164 * 15 13 7 44 44 H 1.09003 * 109.87995 * 117.39400 * 16 15 13 45 45 H 1.08994 * 109.87902 * 238.54434 * 16 15 13 46 46 H 1.09004 * 110.61649 * 201.43818 * 18 17 16 47 47 H 1.09000 * 110.61635 * 78.44647 * 18 17 16 48 48 H 1.07996 * 125.98432 * 179.78219 * 19 3 2 49 49 H 1.08993 * 109.47237 * 149.71655 * 22 21 2 50 50 H 1.09002 * 109.47145 * 29.71044 * 22 21 2 51 51 H 0.96999 * 119.99875 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0006 5 8 0.6996 2.7878 0.0064 6 7 2.8000 3.5107 -0.0052 7 6 2.3645 4.9095 -0.0051 8 1 1.3064 4.9606 -0.2622 9 6 2.5812 5.5110 1.3848 10 6 3.8660 5.0222 2.0741 11 6 3.0516 4.9656 3.3773 12 6 1.8032 4.7881 2.4971 13 6 3.1780 5.6969 -1.0341 14 1 4.2403 5.6686 -0.7917 15 6 2.6736 7.1570 -1.1371 16 6 2.7050 7.4618 -2.6473 17 8 3.2273 6.2968 -3.3077 18 6 2.9226 5.1635 -2.4668 19 6 3.6590 0.6498 -0.0058 20 7 3.6341 -0.6544 -0.0042 21 7 2.3016 -1.0821 0.0025 22 6 1.8501 -2.4758 0.0051 23 6 1.7015 -2.9530 1.4269 24 1 1.9210 -2.2848 2.2464 25 6 1.2843 -4.2423 1.6813 26 7 1.1551 -4.6589 2.9219 27 14 0.9039 -5.3977 0.2636 28 1 2.1348 -6.1358 -0.1174 29 1 -0.1439 -6.3641 0.6802 30 1 0.4181 -4.6117 -0.8990 31 1 -0.3633 0.0023 1.0276 32 1 -0.3633 0.8888 -0.5159 33 1 -0.3634 -0.8911 -0.5118 34 1 3.7461 3.2973 -0.0101 35 1 2.4605 6.5942 1.4008 36 1 4.2032 4.0455 1.7272 37 1 4.6632 5.7654 2.0894 38 1 3.0607 5.8997 3.9389 39 1 3.2769 4.0966 3.9957 40 1 0.9351 5.3424 2.8538 41 1 1.5751 3.7479 2.2651 42 1 1.6568 7.2373 -0.7527 43 1 3.3392 7.8296 -0.5961 44 1 1.6963 7.6693 -3.0046 45 1 3.3517 8.3179 -2.8392 46 1 3.5882 4.3297 -2.6903 47 1 1.8805 4.8665 -2.5857 48 1 4.5448 1.2676 -0.0106 49 1 2.5824 -3.0960 -0.5116 50 1 0.8891 -2.5474 -0.5045 51 1 0.8619 -5.5660 3.1009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893162165.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:41:33 Heat of formation + Delta-G solvation = 2.351589 kcal Electronic energy + Delta-G solvation = -31505.341793 eV Core-core repulsion = 27406.596986 eV Total energy + Delta-G solvation = -4098.744807 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 3.73 seconds Orbital eigenvalues (eV) -41.04801 -40.42459 -38.99817 -37.98263 -34.74145 -33.93560 -32.58794 -32.07297 -31.29078 -29.70851 -28.15951 -27.34338 -26.60624 -25.74544 -23.59853 -23.04719 -22.74948 -21.88034 -20.82540 -19.93558 -19.23638 -18.87025 -17.28178 -17.22321 -16.96544 -16.39446 -15.89480 -15.44209 -15.35873 -15.06002 -14.93071 -14.69201 -14.32971 -14.01601 -13.72072 -13.58237 -13.24731 -12.94998 -12.76797 -12.63183 -12.54267 -12.37977 -12.31972 -12.24718 -12.09129 -11.72845 -11.65304 -11.62467 -11.41447 -11.24320 -10.97368 -10.85822 -10.62605 -10.41242 -10.37112 -10.29617 -10.23712 -9.91830 -9.81583 -9.45746 -8.96644 -8.86839 -8.68054 -7.99628 -6.34818 -4.39596 2.09701 2.70160 3.01052 3.10612 3.15434 3.19949 3.42191 3.69009 3.84742 4.13345 4.13814 4.38520 4.52618 4.56390 4.63772 4.69619 4.79762 4.89136 4.91581 5.00872 5.04221 5.14464 5.16583 5.27190 5.38005 5.43061 5.47545 5.54012 5.56981 5.58399 5.62045 5.64249 5.71321 5.75412 5.81146 5.84386 5.92531 5.96615 6.02406 6.16916 6.25158 6.39561 6.41344 6.46482 6.57744 6.59852 6.62287 6.99236 7.16163 7.53306 7.68246 8.17828 8.25130 8.55356 8.68253 9.19042 10.77409 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016092 B = 0.002633 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.543732 B =10633.133889 C =11514.776308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.169 3.831 3 C -0.330 4.330 4 C 0.607 3.393 5 O -0.553 6.553 6 N -0.727 5.727 7 C 0.164 3.836 8 H 0.102 0.898 9 C -0.122 4.122 10 C -0.134 4.134 11 C -0.143 4.143 12 C -0.131 4.131 13 C -0.127 4.127 14 H 0.089 0.911 15 C -0.147 4.147 16 C 0.046 3.954 17 O -0.381 6.381 18 C 0.054 3.946 19 C 0.061 3.939 20 N -0.292 5.292 21 N -0.313 5.313 22 C 0.224 3.776 23 C -0.545 4.545 24 H 0.082 0.918 25 C 0.081 3.919 26 N -0.883 5.883 27 Si 0.874 3.126 28 H -0.270 1.270 29 H -0.279 1.279 30 H -0.264 1.264 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.397 0.603 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.064 0.936 48 H 0.176 0.824 49 H 0.050 0.950 50 H 0.052 0.948 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.325 23.397 -6.693 24.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.033 3.967 3 C -0.346 4.346 4 C 0.397 3.603 5 O -0.432 6.432 6 N -0.378 5.378 7 C 0.059 3.941 8 H 0.120 0.880 9 C -0.142 4.142 10 C -0.171 4.171 11 C -0.181 4.181 12 C -0.168 4.168 13 C -0.147 4.147 14 H 0.108 0.892 15 C -0.185 4.185 16 C -0.031 4.031 17 O -0.299 6.299 18 C -0.022 4.022 19 C -0.127 4.127 20 N -0.112 5.112 21 N -0.090 5.090 22 C 0.106 3.894 23 C -0.583 4.583 24 H 0.100 0.900 25 C -0.124 4.124 26 N -0.519 5.519 27 Si 0.700 3.300 28 H -0.195 1.195 29 H -0.204 1.204 30 H -0.189 1.189 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.232 0.768 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.112 0.888 47 H 0.082 0.918 48 H 0.193 0.807 49 H 0.068 0.932 50 H 0.070 0.930 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.208 22.139 -6.771 23.372 hybrid contribution -0.130 -0.143 -0.168 0.256 sum 3.079 21.996 -6.939 23.269 Atomic orbital electron populations 1.20593 0.86755 1.03659 1.04202 1.21464 0.94930 0.86413 0.93927 1.19666 0.93015 0.92604 1.29287 1.17262 0.85084 0.83825 0.74093 1.90696 1.16618 1.84275 1.51620 1.45748 1.09672 1.05118 1.77281 1.20728 1.00003 0.80230 0.93185 0.87981 1.22997 0.97730 0.99737 0.93708 1.22894 0.96067 1.01581 0.96604 1.22779 0.97124 1.01729 0.96450 1.22889 0.96505 1.01754 0.95699 1.23013 1.01252 0.94704 0.95683 0.89234 1.22947 1.02689 0.96075 0.96825 1.23146 0.99080 0.89472 0.91360 1.88875 1.79595 1.15890 1.45587 1.23592 1.01214 0.89538 0.87860 1.23723 0.96393 0.92550 1.00009 1.77152 0.98099 1.12419 1.23513 1.48902 1.02751 1.07555 1.49767 1.20161 0.95720 0.73322 1.00228 1.21080 1.48073 0.99210 0.89963 0.90044 1.24791 0.94280 0.97422 0.95860 1.69859 1.45215 1.18223 1.18604 0.86893 0.79110 0.81514 0.82533 1.19519 1.20390 1.18859 0.89513 0.88651 0.91160 0.76800 0.88720 0.89812 0.91904 0.90630 0.91505 0.91952 0.89422 0.90202 0.90258 0.92435 0.90036 0.88838 0.91822 0.80709 0.93177 0.92986 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.61 9.56 36.01 0.34 -1.27 16 2 C 0.17 3.27 7.01 -81.60 -0.57 2.70 16 3 C -0.33 -5.60 6.13 -105.07 -0.64 -6.24 16 4 C 0.61 8.94 6.71 -12.51 -0.08 8.86 16 5 O -0.55 -9.46 13.99 5.28 0.07 -9.39 16 6 N -0.73 -7.61 3.43 -54.88 -0.19 -7.80 16 7 C 0.16 1.49 1.69 -67.93 -0.11 1.37 16 8 H 0.10 1.15 7.03 -51.93 -0.36 0.79 16 9 C -0.12 -1.03 3.44 -89.81 -0.31 -1.34 16 10 C -0.13 -1.10 7.46 -25.92 -0.19 -1.30 16 11 C -0.14 -1.34 8.08 -25.92 -0.21 -1.55 16 12 C -0.13 -1.40 7.53 -25.92 -0.20 -1.59 16 13 C -0.13 -0.96 2.84 -88.61 -0.25 -1.22 16 14 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 15 C -0.15 -0.95 5.61 -25.20 -0.14 -1.09 16 16 C 0.05 0.35 7.70 37.73 0.29 0.64 16 17 O -0.38 -4.06 11.52 -35.23 -0.41 -4.46 16 18 C 0.05 0.51 6.92 38.21 0.26 0.78 16 19 C 0.06 0.99 11.50 -16.98 -0.20 0.79 16 20 N -0.29 -6.00 12.50 30.86 0.39 -5.61 16 21 N -0.31 -6.76 3.56 -57.77 -0.21 -6.96 16 22 C 0.22 5.16 5.04 -5.19 -0.03 5.13 16 23 C -0.55 -14.80 9.94 -34.44 -0.34 -15.14 16 24 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 25 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 26 N -0.88 -25.69 13.96 55.43 0.77 -24.92 16 27 Si 0.87 19.66 27.47 -169.99 -4.67 15.00 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 30 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.09 1.54 6.52 -51.93 -0.34 1.20 16 33 H 0.07 1.14 7.05 -51.93 -0.37 0.78 16 34 H 0.40 3.44 6.68 -40.82 -0.27 3.16 16 35 H 0.09 0.68 7.36 -51.93 -0.38 0.29 16 36 H 0.08 0.73 6.26 -51.93 -0.33 0.40 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.20 6.48 -51.93 -0.34 0.86 16 42 H 0.08 0.49 7.85 -51.93 -0.41 0.08 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.06 0.67 8.05 -51.93 -0.42 0.25 16 48 H 0.18 2.00 7.50 -52.49 -0.39 1.61 16 49 H 0.05 1.14 7.57 -51.93 -0.39 0.75 16 50 H 0.05 1.12 6.06 -51.93 -0.31 0.81 16 51 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -31.72 401.99 -8.78 -40.51 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -8.13 Total: 5.92 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -2.48 Total: -8.34 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.77 Total: -45.29 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.33 Total: -13.85 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.72 -8.78 -40.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893162165.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.860 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.73 seconds