Wall clock time and date at job start Wed Apr 1 2020 07:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38041 * 126.29113 * 2 1 4 4 C 1.47431 * 126.41500 * 0.02900 * 3 2 1 5 5 O 1.21598 * 120.00152 * 0.28383 * 4 3 2 6 6 N 1.34784 * 119.99840 * 180.27928 * 4 3 2 7 7 C 1.46501 * 119.99775 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.47281 * 345.23011 * 7 6 4 9 9 C 1.52998 * 109.46929 * 105.22690 * 7 6 4 10 10 C 1.53779 * 113.61527 * 37.49678 * 9 7 6 11 11 C 1.53777 * 87.08082 * 220.01775 * 10 9 7 12 12 C 1.53775 * 87.08247 * 25.43455 * 11 10 9 13 13 C 1.52995 * 109.47045 * 225.22608 * 7 6 4 14 14 H 1.09000 * 110.80928 * 299.42209 * 13 7 6 15 15 C 1.54814 * 110.90870 * 175.79189 * 13 7 6 16 16 C 1.54097 * 104.18887 * 220.92189 * 15 13 7 17 17 O 1.43742 * 107.29622 * 357.97265 * 16 15 13 18 18 C 1.44377 * 106.97358 * 26.50830 * 17 16 15 19 19 C 1.41294 * 107.16934 * 180.24442 * 3 2 1 20 20 N 1.30443 * 108.02398 * 359.78200 * 19 3 2 21 21 N 1.34252 * 126.29055 * 179.87010 * 2 1 3 22 22 C 1.46503 * 125.75697 * 0.02562 * 21 2 1 23 23 C 1.50705 * 109.46832 * 269.71415 * 22 21 2 24 24 H 1.07996 * 120.00152 * 0.02562 * 23 22 21 25 25 C 1.37882 * 119.99919 * 179.97438 * 23 22 21 26 26 N 1.31508 * 120.00139 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 119.99722 * 0.02562 * 25 23 22 28 28 H 1.48493 * 109.47558 * 89.99535 * 27 25 23 29 29 H 1.48502 * 109.46955 * 209.99595 * 27 25 23 30 30 H 1.48506 * 109.47376 * 329.98863 * 27 25 23 31 31 H 1.08999 * 109.47196 * 270.12907 * 1 2 3 32 32 H 1.09000 * 109.46947 * 30.13153 * 1 2 3 33 33 H 1.09002 * 109.47365 * 150.12778 * 1 2 3 34 34 H 0.96993 * 119.99884 * 0.02562 * 6 4 3 35 35 H 1.08994 * 112.85133 * 168.80408 * 9 7 6 36 36 H 1.09003 * 113.61626 * 334.56780 * 10 9 7 37 37 H 1.08999 * 113.61650 * 105.46692 * 10 9 7 38 38 H 1.08994 * 113.61954 * 270.88043 * 11 10 9 39 39 H 1.09014 * 113.61309 * 139.97937 * 11 10 9 40 40 H 1.08998 * 113.61233 * 220.02008 * 12 11 10 41 41 H 1.08995 * 113.69516 * 89.12865 * 12 11 10 42 42 H 1.09003 * 110.48607 * 339.60176 * 15 13 7 43 43 H 1.09002 * 110.48730 * 102.11164 * 15 13 7 44 44 H 1.09003 * 109.87995 * 117.39400 * 16 15 13 45 45 H 1.08994 * 109.87902 * 238.54434 * 16 15 13 46 46 H 1.09004 * 110.61649 * 201.43818 * 18 17 16 47 47 H 1.09000 * 110.61635 * 78.44647 * 18 17 16 48 48 H 1.07996 * 125.98432 * 179.78219 * 19 3 2 49 49 H 1.08993 * 109.47237 * 149.71655 * 22 21 2 50 50 H 1.09002 * 109.47145 * 29.71044 * 22 21 2 51 51 H 0.96999 * 119.99875 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0006 5 8 0.6996 2.7878 0.0064 6 7 2.8000 3.5107 -0.0052 7 6 2.3645 4.9095 -0.0051 8 1 1.3064 4.9606 -0.2622 9 6 2.5812 5.5110 1.3848 10 6 3.8660 5.0222 2.0741 11 6 3.0516 4.9656 3.3773 12 6 1.8032 4.7881 2.4971 13 6 3.1780 5.6969 -1.0341 14 1 4.2403 5.6686 -0.7917 15 6 2.6736 7.1570 -1.1371 16 6 2.7050 7.4618 -2.6473 17 8 3.2273 6.2968 -3.3077 18 6 2.9226 5.1635 -2.4668 19 6 3.6590 0.6498 -0.0058 20 7 3.6341 -0.6544 -0.0042 21 7 2.3016 -1.0821 0.0025 22 6 1.8501 -2.4758 0.0051 23 6 1.7015 -2.9530 1.4269 24 1 1.9210 -2.2848 2.2464 25 6 1.2843 -4.2423 1.6813 26 7 1.1551 -4.6589 2.9219 27 14 0.9039 -5.3977 0.2636 28 1 2.1348 -6.1358 -0.1174 29 1 -0.1439 -6.3641 0.6802 30 1 0.4181 -4.6117 -0.8990 31 1 -0.3633 0.0023 1.0276 32 1 -0.3633 0.8888 -0.5159 33 1 -0.3634 -0.8911 -0.5118 34 1 3.7461 3.2973 -0.0101 35 1 2.4605 6.5942 1.4008 36 1 4.2032 4.0455 1.7272 37 1 4.6632 5.7654 2.0894 38 1 3.0607 5.8997 3.9389 39 1 3.2769 4.0966 3.9957 40 1 0.9351 5.3424 2.8538 41 1 1.5751 3.7479 2.2651 42 1 1.6568 7.2373 -0.7527 43 1 3.3392 7.8296 -0.5961 44 1 1.6963 7.6693 -3.0046 45 1 3.3517 8.3179 -2.8392 46 1 3.5882 4.3297 -2.6903 47 1 1.8805 4.8665 -2.5857 48 1 4.5448 1.2676 -0.0106 49 1 2.5824 -3.0960 -0.5116 50 1 0.8891 -2.5474 -0.5045 51 1 0.8619 -5.5660 3.1009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893162165.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:41:25 Heat of formation + Delta-G solvation = -17.936054 kcal Electronic energy + Delta-G solvation = -31506.221532 eV Core-core repulsion = 27406.596986 eV Total energy + Delta-G solvation = -4099.624546 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 9.78 seconds Orbital eigenvalues (eV) -42.38036 -41.35829 -39.81528 -38.99096 -35.81958 -35.60713 -34.07000 -33.22661 -32.78469 -30.50161 -29.57932 -28.54382 -27.81895 -26.50179 -25.08511 -24.15302 -23.62315 -22.94267 -21.57914 -21.22978 -20.45322 -19.83013 -19.29774 -18.51499 -17.69532 -17.12966 -17.02147 -16.58897 -16.45425 -16.09584 -16.05547 -15.87058 -15.68031 -15.24074 -14.97279 -14.71194 -14.44811 -14.15104 -14.07119 -13.83895 -13.73771 -13.66609 -13.35697 -13.19885 -13.12355 -13.01870 -12.97466 -12.59199 -12.34333 -12.26082 -12.13980 -12.12241 -11.86265 -11.72721 -11.58052 -11.36360 -11.15220 -10.99372 -10.93635 -10.72299 -10.61406 -10.26985 -9.95862 -9.41940 -8.44399 -6.56347 0.67333 1.32168 1.33490 1.34928 1.43530 1.61872 2.23162 2.35405 2.57384 2.88273 3.04586 3.44197 3.70000 3.72850 3.74589 3.81794 3.85690 4.00383 4.03725 4.11208 4.12824 4.20073 4.29123 4.38124 4.40216 4.50274 4.52676 4.59017 4.67302 4.69178 4.76083 4.86716 4.87679 4.91348 4.93066 4.95954 4.98714 5.03822 5.09426 5.12263 5.13366 5.16604 5.19607 5.28698 5.40913 5.59807 5.64308 5.75108 5.82903 5.95091 6.20104 6.46553 6.65553 6.81335 7.07531 7.42262 8.72110 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016092 B = 0.002633 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.543732 B =10633.133889 C =11514.776308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.146 3.854 3 C -0.328 4.328 4 C 0.610 3.390 5 O -0.579 6.579 6 N -0.707 5.707 7 C 0.168 3.832 8 H 0.081 0.919 9 C -0.108 4.108 10 C -0.128 4.128 11 C -0.143 4.143 12 C -0.144 4.144 13 C -0.115 4.115 14 H 0.107 0.893 15 C -0.142 4.142 16 C 0.038 3.962 17 O -0.404 6.404 18 C 0.051 3.949 19 C 0.080 3.920 20 N -0.334 5.334 21 N -0.339 5.339 22 C 0.233 3.767 23 C -0.552 4.552 24 H 0.025 0.975 25 C 0.023 3.977 26 N -0.935 5.935 27 Si 0.949 3.051 28 H -0.263 1.263 29 H -0.275 1.275 30 H -0.235 1.235 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.410 0.590 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.057 0.943 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.046 0.954 48 H 0.225 0.775 49 H 0.055 0.945 50 H 0.071 0.929 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.578 25.637 -8.400 27.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.010 3.990 3 C -0.344 4.344 4 C 0.399 3.601 5 O -0.460 6.460 6 N -0.358 5.358 7 C 0.063 3.937 8 H 0.099 0.901 9 C -0.128 4.128 10 C -0.165 4.165 11 C -0.181 4.181 12 C -0.182 4.182 13 C -0.134 4.134 14 H 0.125 0.875 15 C -0.180 4.180 16 C -0.038 4.038 17 O -0.323 6.323 18 C -0.025 4.025 19 C -0.107 4.107 20 N -0.153 5.153 21 N -0.116 5.116 22 C 0.114 3.886 23 C -0.591 4.591 24 H 0.044 0.956 25 C -0.177 4.177 26 N -0.573 5.573 27 Si 0.770 3.230 28 H -0.188 1.188 29 H -0.200 1.200 30 H -0.158 1.158 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.247 0.753 35 H 0.137 0.863 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.120 0.880 44 H 0.075 0.925 45 H 0.115 0.885 46 H 0.112 0.888 47 H 0.065 0.935 48 H 0.241 0.759 49 H 0.073 0.927 50 H 0.089 0.911 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.491 24.436 -8.486 26.254 hybrid contribution -0.496 -0.650 0.458 0.937 sum 3.995 23.786 -8.028 25.420 Atomic orbital electron populations 1.20574 0.85908 1.04464 1.03661 1.21966 0.95898 0.86784 0.94315 1.20014 0.93152 0.93364 1.27826 1.17023 0.85176 0.83676 0.74230 1.90685 1.17886 1.84484 1.52985 1.45581 1.09669 1.05134 1.75439 1.20780 0.99227 0.79284 0.94420 0.90091 1.22975 0.97085 1.00679 0.92011 1.22877 0.96361 1.02003 0.95258 1.22814 0.96529 1.01872 0.96861 1.22875 0.97448 1.00024 0.97810 1.22921 1.01800 0.95052 0.93639 0.87523 1.22959 1.03460 0.95340 0.96206 1.23347 0.99443 0.89003 0.92015 1.88854 1.79884 1.16907 1.46669 1.23587 1.00214 0.89651 0.89069 1.24483 0.97695 0.91598 0.96936 1.77090 0.97971 1.14547 1.25680 1.48747 1.03530 1.07274 1.52014 1.19886 0.96723 0.74683 0.97346 1.21179 1.48112 0.98821 0.90940 0.95618 1.25816 0.93648 0.99243 0.99002 1.70020 1.46711 1.19066 1.21506 0.85702 0.79172 0.78871 0.79244 1.18772 1.19971 1.15806 0.90661 0.87746 0.90363 0.75315 0.86290 0.90334 0.89554 0.88921 0.93164 0.92083 0.92900 0.89902 0.87956 0.92453 0.88501 0.88824 0.93539 0.75867 0.92719 0.91116 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.10 9.56 71.24 0.68 -2.42 16 2 C 0.15 5.72 7.01 42.14 0.30 6.02 16 3 C -0.33 -11.04 6.13 -20.15 -0.12 -11.16 16 4 C 0.61 17.69 6.71 86.66 0.58 18.27 16 5 O -0.58 -20.03 13.99 -4.02 -0.06 -20.08 16 6 N -0.71 -13.62 3.43 -445.80 -1.53 -15.15 16 7 C 0.17 2.71 1.69 44.99 0.08 2.78 16 8 H 0.08 1.75 7.03 -2.39 -0.02 1.73 16 9 C -0.11 -1.52 3.44 -10.27 -0.04 -1.56 16 10 C -0.13 -1.70 7.46 31.12 0.23 -1.46 16 11 C -0.14 -2.44 8.08 31.12 0.25 -2.19 16 12 C -0.14 -2.96 7.53 31.12 0.23 -2.73 16 13 C -0.11 -1.40 2.84 -9.49 -0.03 -1.43 16 14 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 15 C -0.14 -1.34 5.61 31.58 0.18 -1.16 16 16 C 0.04 0.49 7.70 72.35 0.56 1.05 16 17 O -0.40 -7.92 11.52 -148.98 -1.72 -9.63 16 18 C 0.05 0.89 6.92 72.66 0.50 1.39 16 19 C 0.08 2.50 11.50 85.65 0.99 3.49 16 20 N -0.33 -13.68 12.50 -56.28 -0.70 -14.38 16 21 N -0.34 -14.84 3.56 -336.70 -1.20 -16.04 16 22 C 0.23 10.82 5.04 85.63 0.43 11.25 16 23 C -0.55 -31.22 9.94 25.60 0.25 -30.96 16 24 H 0.03 1.68 8.06 -2.91 -0.02 1.66 16 25 C 0.02 1.29 5.47 84.66 0.46 1.75 16 26 N -0.93 -56.50 13.96 21.45 0.30 -56.20 16 27 Si 0.95 40.41 27.47 68.60 1.88 42.29 16 28 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 29 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 30 H -0.24 -8.85 6.54 99.48 0.65 -8.20 16 31 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.10 3.44 6.52 -2.39 -0.02 3.42 16 33 H 0.08 2.56 7.05 -2.39 -0.02 2.54 16 34 H 0.41 5.91 6.68 -92.71 -0.62 5.29 16 35 H 0.12 1.19 7.36 -2.39 -0.02 1.17 16 36 H 0.08 1.13 6.26 -2.39 -0.01 1.11 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.05 1.01 8.14 -2.38 -0.02 1.00 16 40 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 41 H 0.05 1.47 6.48 -2.39 -0.02 1.46 16 42 H 0.08 0.76 7.85 -2.39 -0.02 0.75 16 43 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.05 0.95 8.05 -2.39 -0.02 0.93 16 48 H 0.23 4.38 7.50 -2.91 -0.02 4.36 16 49 H 0.05 2.47 7.57 -2.39 -0.02 2.45 16 50 H 0.07 2.98 6.06 -2.39 -0.01 2.96 16 51 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -74.10 401.99 2.79 -71.32 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.27 Total: 26.96 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 5.54 Total: -9.07 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -3.13 Total: -101.78 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -1.77 Total: -29.72 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 1.88 Total: 42.29 kcal Total: -74.10 2.79 -71.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893162165.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.382 kcal (2) G-P(sol) polarization free energy of solvation -74.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.79 seconds