Wall clock time and date at job start Wed Apr 1 2020 07:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38037 * 126.29149 * 2 1 4 4 C 1.47427 * 126.41823 * 359.97438 * 3 2 1 5 5 O 1.21601 * 119.99940 * 0.02562 * 4 3 2 6 6 N 1.34772 * 119.99856 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99653 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47052 * 180.02562 * 7 6 4 9 9 H 1.09000 * 112.86983 * 316.26237 * 8 7 6 10 10 C 1.54050 * 113.68956 * 87.57740 * 8 7 6 11 11 C 1.53875 * 87.09660 * 139.55603 * 10 8 7 12 12 C 1.53312 * 113.63705 * 184.99748 * 8 7 6 13 13 C 1.52823 * 113.64239 * 335.08362 * 12 8 7 14 14 C 1.53260 * 108.88762 * 184.12556 * 13 12 8 15 15 O 1.42893 * 109.32850 * 304.69614 * 14 13 12 16 16 C 1.42897 * 114.36026 * 62.98845 * 15 14 13 17 17 C 1.52833 * 113.63929 * 105.53515 * 12 8 7 18 18 C 1.41293 * 107.16642 * 180.25909 * 3 2 1 19 19 N 1.30448 * 108.02478 * 359.59306 * 18 3 2 20 20 N 1.34262 * 126.28565 * 180.02562 * 2 1 3 21 21 C 1.46502 * 125.75985 * 359.97438 * 20 2 1 22 22 C 1.50697 * 109.47185 * 89.99386 * 21 20 2 23 23 H 1.07999 * 120.00204 * 0.02562 * 22 21 20 24 24 C 1.37879 * 119.99615 * 180.02562 * 22 21 20 25 25 N 1.31505 * 120.00171 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99678 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47237 * 90.00113 * 26 24 22 28 28 H 1.48498 * 109.46964 * 209.99877 * 26 24 22 29 29 H 1.48498 * 109.47120 * 329.99960 * 26 24 22 30 30 H 1.09006 * 109.46875 * 89.97823 * 1 2 3 31 31 H 1.09002 * 109.47447 * 209.97338 * 1 2 3 32 32 H 1.08998 * 109.47313 * 329.97811 * 1 2 3 33 33 H 0.96997 * 120.00549 * 0.02562 * 6 4 3 34 34 H 1.09002 * 109.47465 * 60.00086 * 7 6 4 35 35 H 1.09002 * 109.47026 * 300.00128 * 7 6 4 36 36 H 1.08993 * 113.60409 * 25.01845 * 10 8 7 37 37 H 1.08999 * 113.65112 * 254.09870 * 10 8 7 38 38 H 1.09002 * 113.63649 * 220.42644 * 11 10 8 39 39 H 1.09004 * 113.63928 * 89.53992 * 11 10 8 40 40 H 1.08999 * 109.57104 * 303.94956 * 13 12 8 41 41 H 1.09009 * 109.56809 * 64.30555 * 13 12 8 42 42 H 1.08997 * 109.49589 * 184.73577 * 14 13 12 43 43 H 1.09008 * 109.51638 * 64.66203 * 14 13 12 44 44 H 1.09000 * 109.49732 * 177.05235 * 16 15 14 45 45 H 1.09008 * 109.51817 * 56.97539 * 16 15 14 46 46 H 1.09002 * 109.57036 * 295.69294 * 17 12 8 47 47 H 1.09004 * 109.56880 * 55.93032 * 17 12 8 48 48 H 1.08009 * 125.98628 * 179.73487 * 18 3 2 49 49 H 1.08999 * 109.46773 * 210.00152 * 21 20 2 50 50 H 1.09002 * 109.46426 * 329.99195 * 21 20 2 51 51 H 0.97006 * 120.00482 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8859 2.5202 -0.0005 5 8 0.6997 2.7878 -0.0006 6 7 2.8000 3.5105 0.0001 7 6 2.3646 4.9094 0.0001 8 6 3.5903 5.8250 0.0002 9 1 4.3639 5.4972 0.6945 10 6 4.1218 6.1478 -1.4092 11 6 4.3449 7.5863 -0.9105 12 6 3.2453 7.3138 0.1226 13 6 1.8413 7.6603 -0.3718 14 6 1.6498 9.1790 -0.2972 15 8 1.9146 9.6243 1.0345 16 6 3.2570 9.4059 1.4730 17 6 3.5425 7.9004 1.5022 18 6 3.6590 0.6497 -0.0061 19 7 3.6340 -0.6545 -0.0007 20 7 2.3016 -1.0823 -0.0005 21 6 1.8500 -2.4759 -0.0006 22 6 1.6945 -2.9535 -1.4214 23 1 1.9108 -2.2859 -2.2422 24 6 1.2760 -4.2429 -1.6733 25 7 1.0130 -5.0560 -0.6738 26 14 1.0839 -4.8351 -3.4345 27 1 2.3646 -5.4243 -3.9011 28 1 0.0142 -5.8632 -3.4971 29 1 0.7201 -3.6886 -4.3054 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3634 0.8898 0.5142 33 1 3.7463 3.2972 0.0005 34 1 1.7655 5.1034 0.8898 35 1 1.7663 5.1037 -0.8901 36 1 3.3651 6.0690 -2.1897 37 1 5.0448 5.6244 -1.6589 38 1 4.0779 8.3488 -1.6422 39 1 5.3285 7.7484 -0.4695 40 1 1.7251 7.3279 -1.4033 41 1 1.1005 7.1675 0.2581 42 1 0.6242 9.4301 -0.5675 43 1 2.3378 9.6672 -0.9875 44 1 3.3848 9.8198 2.4733 45 1 3.9485 9.8941 0.7862 46 1 2.9061 7.4224 2.2470 47 1 4.5895 7.7303 1.7534 48 1 4.5449 1.2675 -0.0117 49 1 2.5848 -3.0959 0.5129 50 1 0.8916 -2.5472 0.5137 51 1 0.7182 -5.9630 -0.8510 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893173608.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:31:37 Heat of formation + Delta-G solvation = -10.616824 kcal Electronic energy + Delta-G solvation = -30404.083257 eV Core-core repulsion = 26304.776097 eV Total energy + Delta-G solvation = -4099.307160 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 8.43 seconds Orbital eigenvalues (eV) -41.23182 -40.72512 -38.73496 -37.76807 -34.39180 -33.84347 -32.08399 -31.67906 -31.26334 -31.12103 -28.96929 -27.09842 -26.52837 -24.91833 -24.07700 -23.70094 -23.03505 -21.79689 -21.35118 -19.85326 -19.06689 -18.39525 -17.13074 -16.76779 -16.68550 -16.32856 -15.75037 -15.47416 -15.27519 -15.12925 -14.92182 -14.55170 -14.49640 -14.12348 -14.07069 -13.77079 -13.39901 -13.17419 -12.97358 -12.63929 -12.57587 -12.41608 -12.11943 -12.07801 -11.94433 -11.77223 -11.66756 -11.48739 -11.45919 -11.22927 -11.12188 -10.88929 -10.80716 -10.66976 -10.37148 -10.18699 -10.15215 -9.93499 -9.71766 -9.34638 -8.90207 -8.71312 -8.57945 -7.89429 -6.33710 -4.41459 2.21410 2.80751 3.17670 3.18452 3.24482 3.30005 3.52007 3.57245 3.94590 4.06207 4.09362 4.23180 4.24290 4.41901 4.62287 4.65456 4.73750 4.88583 4.99455 5.00746 5.05672 5.12038 5.15281 5.21091 5.23823 5.28787 5.31539 5.39923 5.49800 5.55841 5.58502 5.65833 5.67862 5.70045 5.75385 5.77575 5.83357 5.96566 6.06086 6.13721 6.14257 6.43644 6.57130 6.67236 6.80842 6.85836 6.91171 7.16867 7.56220 7.76681 7.77482 7.81086 8.38784 8.63073 8.66027 9.25337 10.74483 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024456 B = 0.001872 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.616671 B =14957.462045 C =15017.649292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.165 3.835 3 C -0.333 4.333 4 C 0.602 3.398 5 O -0.557 6.557 6 N -0.734 5.734 7 C 0.136 3.864 8 C -0.113 4.113 9 H 0.097 0.903 10 C -0.134 4.134 11 C -0.133 4.133 12 C -0.070 4.070 13 C -0.136 4.136 14 C 0.063 3.937 15 O -0.384 6.384 16 C 0.063 3.937 17 C -0.141 4.141 18 C 0.057 3.943 19 N -0.296 5.296 20 N -0.314 5.314 21 C 0.251 3.749 22 C -0.539 4.539 23 H 0.065 0.935 24 C 0.067 3.933 25 N -0.889 5.889 26 Si 0.908 3.092 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.271 1.271 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.397 0.603 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.049 0.951 44 H 0.091 0.909 45 H 0.049 0.951 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.174 0.826 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.831 27.321 2.190 28.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.027 3.973 3 C -0.348 4.348 4 C 0.393 3.607 5 O -0.437 6.437 6 N -0.386 5.386 7 C 0.012 3.988 8 C -0.131 4.131 9 H 0.115 0.885 10 C -0.172 4.172 11 C -0.171 4.171 12 C -0.071 4.071 13 C -0.173 4.173 14 C -0.014 4.014 15 O -0.302 6.302 16 C -0.014 4.014 17 C -0.178 4.178 18 C -0.130 4.130 19 N -0.116 5.116 20 N -0.091 5.091 21 C 0.134 3.866 22 C -0.578 4.578 23 H 0.083 0.917 24 C -0.137 4.137 25 N -0.527 5.527 26 Si 0.735 3.265 27 H -0.203 1.203 28 H -0.208 1.208 29 H -0.196 1.196 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.231 0.769 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.067 0.933 44 H 0.109 0.891 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.191 0.809 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.456 26.146 2.363 26.814 hybrid contribution 0.335 -0.094 -1.119 1.171 sum 5.791 26.052 1.244 26.717 Atomic orbital electron populations 1.20566 0.86835 1.03753 1.03898 1.21481 0.94962 0.86553 0.94266 1.19690 0.93104 0.92582 1.29441 1.17311 0.85024 0.83925 0.74452 1.90688 1.16750 1.84514 1.51720 1.45712 1.09682 1.05495 1.77712 1.21238 0.95662 0.79869 1.02034 1.22850 0.97849 0.94055 0.98365 0.88455 1.23024 1.01576 0.96248 0.96327 1.22944 0.98431 0.97449 0.98244 1.21520 0.95393 0.94977 0.95223 1.22024 0.95769 0.97092 1.02426 1.22598 1.01478 0.93399 0.83920 1.87908 1.29216 1.82257 1.30866 1.22569 0.83780 0.95000 1.00047 1.22147 1.02196 0.96597 0.96879 1.23702 0.96318 0.92615 1.00357 1.77130 0.98655 1.12280 1.23562 1.49360 1.02467 1.08293 1.48978 1.19851 0.96405 0.70932 0.99432 1.21242 1.47386 0.98141 0.91002 0.91682 1.24925 0.94463 0.96007 0.98303 1.69909 1.44505 1.07163 1.31115 0.86320 0.78080 0.78631 0.83477 1.20254 1.20783 1.19608 0.89871 0.90904 0.88833 0.76936 0.91772 0.91574 0.89804 0.91128 0.91394 0.89994 0.90350 0.90151 0.88805 0.93264 0.89057 0.93281 0.90748 0.90720 0.80862 0.92536 0.92558 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.57 36.01 0.34 -1.35 16 2 C 0.16 3.38 7.01 -81.60 -0.57 2.81 16 3 C -0.33 -6.10 6.13 -105.07 -0.64 -6.75 16 4 C 0.60 10.02 7.81 -12.52 -0.10 9.92 16 5 O -0.56 -10.72 14.84 5.28 0.08 -10.64 16 6 N -0.73 -8.85 5.55 -61.38 -0.34 -9.19 16 7 C 0.14 1.39 4.34 -4.04 -0.02 1.37 16 8 C -0.11 -0.81 3.27 -89.91 -0.29 -1.10 16 9 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 10 C -0.13 -0.89 7.31 -25.73 -0.19 -1.08 16 11 C -0.13 -0.77 7.03 -26.11 -0.18 -0.95 16 12 C -0.07 -0.46 0.69 -154.36 -0.11 -0.57 16 13 C -0.14 -0.97 4.07 -26.69 -0.11 -1.08 16 14 C 0.06 0.44 6.78 37.29 0.25 0.69 16 15 O -0.38 -3.42 10.72 -35.23 -0.38 -3.79 16 16 C 0.06 0.41 6.78 37.30 0.25 0.67 16 17 C -0.14 -0.90 5.33 -26.68 -0.14 -1.04 16 18 C 0.06 0.99 11.50 -16.98 -0.20 0.80 16 19 N -0.30 -6.38 12.50 30.86 0.39 -5.99 16 20 N -0.31 -7.14 3.56 -57.78 -0.21 -7.34 16 21 C 0.25 6.28 5.97 -5.19 -0.03 6.24 16 22 C -0.54 -14.58 9.39 -34.44 -0.32 -14.90 16 23 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 24 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 25 N -0.89 -24.63 13.28 55.43 0.74 -23.90 16 26 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 29 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.07 1.30 7.05 -51.93 -0.37 0.93 16 32 H 0.09 1.64 6.50 -51.93 -0.34 1.31 16 33 H 0.40 3.85 7.43 -40.82 -0.30 3.55 16 34 H 0.06 0.73 7.88 -51.93 -0.41 0.32 16 35 H 0.07 0.74 7.21 -51.93 -0.37 0.36 16 36 H 0.08 0.60 7.41 -51.93 -0.39 0.22 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.38 7.63 -51.93 -0.40 -0.02 16 39 H 0.08 0.42 8.02 -51.93 -0.42 0.01 16 40 H 0.08 0.53 7.16 -51.93 -0.37 0.16 16 41 H 0.08 0.68 7.44 -51.92 -0.39 0.29 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.30 7.68 -51.92 -0.40 -0.10 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.28 8.12 -51.92 -0.42 -0.14 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.40 8.04 -51.93 -0.42 -0.02 16 48 H 0.17 2.14 7.50 -52.48 -0.39 1.75 16 49 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 50 H 0.06 1.40 7.02 -51.93 -0.36 1.03 16 51 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 404.91 15.07 6.10 6.10 Total: -1.00 -31.63 404.91 -9.04 -40.67 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -8.24 Total: 2.86 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -2.15 Total: -4.61 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.58 Total: -46.42 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.30 Total: -14.43 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.63 -9.04 -40.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893173608.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.053 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.43 seconds