Wall clock time and date at job start Wed Apr 1 2020 07:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38037 * 126.29149 * 2 1 4 4 C 1.47427 * 126.41823 * 359.97438 * 3 2 1 5 5 O 1.21601 * 119.99940 * 0.02562 * 4 3 2 6 6 N 1.34772 * 119.99856 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99653 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47052 * 180.02562 * 7 6 4 9 9 H 1.09000 * 112.86983 * 316.26237 * 8 7 6 10 10 C 1.54050 * 113.68956 * 87.57740 * 8 7 6 11 11 C 1.53875 * 87.09660 * 139.55603 * 10 8 7 12 12 C 1.53312 * 113.63705 * 184.99748 * 8 7 6 13 13 C 1.52823 * 113.64239 * 335.08362 * 12 8 7 14 14 C 1.53260 * 108.88762 * 184.12556 * 13 12 8 15 15 O 1.42893 * 109.32850 * 304.69614 * 14 13 12 16 16 C 1.42897 * 114.36026 * 62.98845 * 15 14 13 17 17 C 1.52833 * 113.63929 * 105.53515 * 12 8 7 18 18 C 1.41293 * 107.16642 * 180.25909 * 3 2 1 19 19 N 1.30448 * 108.02478 * 359.59306 * 18 3 2 20 20 N 1.34262 * 126.28565 * 180.02562 * 2 1 3 21 21 C 1.46502 * 125.75985 * 359.97438 * 20 2 1 22 22 C 1.50697 * 109.47185 * 89.99386 * 21 20 2 23 23 H 1.07999 * 120.00204 * 0.02562 * 22 21 20 24 24 C 1.37879 * 119.99615 * 180.02562 * 22 21 20 25 25 N 1.31505 * 120.00171 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99678 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47237 * 90.00113 * 26 24 22 28 28 H 1.48498 * 109.46964 * 209.99877 * 26 24 22 29 29 H 1.48498 * 109.47120 * 329.99960 * 26 24 22 30 30 H 1.09006 * 109.46875 * 89.97823 * 1 2 3 31 31 H 1.09002 * 109.47447 * 209.97338 * 1 2 3 32 32 H 1.08998 * 109.47313 * 329.97811 * 1 2 3 33 33 H 0.96997 * 120.00549 * 0.02562 * 6 4 3 34 34 H 1.09002 * 109.47465 * 60.00086 * 7 6 4 35 35 H 1.09002 * 109.47026 * 300.00128 * 7 6 4 36 36 H 1.08993 * 113.60409 * 25.01845 * 10 8 7 37 37 H 1.08999 * 113.65112 * 254.09870 * 10 8 7 38 38 H 1.09002 * 113.63649 * 220.42644 * 11 10 8 39 39 H 1.09004 * 113.63928 * 89.53992 * 11 10 8 40 40 H 1.08999 * 109.57104 * 303.94956 * 13 12 8 41 41 H 1.09009 * 109.56809 * 64.30555 * 13 12 8 42 42 H 1.08997 * 109.49589 * 184.73577 * 14 13 12 43 43 H 1.09008 * 109.51638 * 64.66203 * 14 13 12 44 44 H 1.09000 * 109.49732 * 177.05235 * 16 15 14 45 45 H 1.09008 * 109.51817 * 56.97539 * 16 15 14 46 46 H 1.09002 * 109.57036 * 295.69294 * 17 12 8 47 47 H 1.09004 * 109.56880 * 55.93032 * 17 12 8 48 48 H 1.08009 * 125.98628 * 179.73487 * 18 3 2 49 49 H 1.08999 * 109.46773 * 210.00152 * 21 20 2 50 50 H 1.09002 * 109.46426 * 329.99195 * 21 20 2 51 51 H 0.97006 * 120.00482 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8859 2.5202 -0.0005 5 8 0.6997 2.7878 -0.0006 6 7 2.8000 3.5105 0.0001 7 6 2.3646 4.9094 0.0001 8 6 3.5903 5.8250 0.0002 9 1 4.3639 5.4972 0.6945 10 6 4.1218 6.1478 -1.4092 11 6 4.3449 7.5863 -0.9105 12 6 3.2453 7.3138 0.1226 13 6 1.8413 7.6603 -0.3718 14 6 1.6498 9.1790 -0.2972 15 8 1.9146 9.6243 1.0345 16 6 3.2570 9.4059 1.4730 17 6 3.5425 7.9004 1.5022 18 6 3.6590 0.6497 -0.0061 19 7 3.6340 -0.6545 -0.0007 20 7 2.3016 -1.0823 -0.0005 21 6 1.8500 -2.4759 -0.0006 22 6 1.6945 -2.9535 -1.4214 23 1 1.9108 -2.2859 -2.2422 24 6 1.2760 -4.2429 -1.6733 25 7 1.0130 -5.0560 -0.6738 26 14 1.0839 -4.8351 -3.4345 27 1 2.3646 -5.4243 -3.9011 28 1 0.0142 -5.8632 -3.4971 29 1 0.7201 -3.6886 -4.3054 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3634 0.8898 0.5142 33 1 3.7463 3.2972 0.0005 34 1 1.7655 5.1034 0.8898 35 1 1.7663 5.1037 -0.8901 36 1 3.3651 6.0690 -2.1897 37 1 5.0448 5.6244 -1.6589 38 1 4.0779 8.3488 -1.6422 39 1 5.3285 7.7484 -0.4695 40 1 1.7251 7.3279 -1.4033 41 1 1.1005 7.1675 0.2581 42 1 0.6242 9.4301 -0.5675 43 1 2.3378 9.6672 -0.9875 44 1 3.3848 9.8198 2.4733 45 1 3.9485 9.8941 0.7862 46 1 2.9061 7.4224 2.2470 47 1 4.5895 7.7303 1.7534 48 1 4.5449 1.2675 -0.0117 49 1 2.5848 -3.0959 0.5129 50 1 0.8916 -2.5472 0.5137 51 1 0.7182 -5.9630 -0.8510 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893173608.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:31:35 Heat of formation + Delta-G solvation = -30.380037 kcal Electronic energy + Delta-G solvation = -30404.940255 eV Core-core repulsion = 26304.776097 eV Total energy + Delta-G solvation = -4100.164157 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 3.63 seconds Orbital eigenvalues (eV) -42.31701 -41.75109 -39.97496 -38.42844 -35.84423 -35.44466 -33.81125 -32.75871 -32.19009 -31.80825 -30.10650 -28.76641 -27.93403 -25.55629 -25.30444 -24.61559 -24.07479 -23.03106 -21.94898 -21.24391 -20.54752 -19.06597 -18.85801 -18.36834 -17.34218 -17.00628 -16.85769 -16.63679 -16.41930 -16.27783 -15.91463 -15.73159 -15.66890 -15.34125 -14.95648 -14.70598 -14.49194 -14.37730 -14.06524 -13.94905 -13.85999 -13.68967 -13.57541 -13.14369 -13.09174 -12.97273 -12.76419 -12.70980 -12.49541 -12.31798 -12.20060 -12.06582 -11.86140 -11.74576 -11.72897 -11.38175 -11.19970 -10.79215 -10.76761 -10.70653 -10.26648 -10.23514 -10.03201 -9.41899 -8.38478 -6.54866 0.68869 1.33226 1.36832 1.38647 1.48376 1.66062 2.31211 2.39498 2.56853 2.93600 3.02594 3.50469 3.54871 3.64578 3.74623 3.78515 3.89023 4.11094 4.13619 4.13887 4.18249 4.25124 4.32842 4.44343 4.52244 4.53715 4.59344 4.61667 4.68356 4.73218 4.78268 4.82444 4.83918 4.90009 4.94141 4.99755 5.03318 5.08405 5.11283 5.16768 5.17340 5.23126 5.25463 5.47632 5.48992 5.57748 5.65053 5.69945 5.74216 6.04290 6.34261 6.54069 6.66848 6.85744 7.16105 7.39902 8.69380 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024456 B = 0.001872 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.616671 B =14957.462045 C =15017.649292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.143 3.857 3 C -0.331 4.331 4 C 0.602 3.398 5 O -0.587 6.587 6 N -0.712 5.712 7 C 0.138 3.862 8 C -0.107 4.107 9 H 0.111 0.889 10 C -0.134 4.134 11 C -0.123 4.123 12 C -0.071 4.071 13 C -0.135 4.135 14 C 0.061 3.939 15 O -0.409 6.409 16 C 0.058 3.942 17 C -0.138 4.138 18 C 0.080 3.920 19 N -0.336 5.336 20 N -0.338 5.338 21 C 0.267 3.733 22 C -0.555 4.555 23 H 0.051 0.949 24 C 0.023 3.977 25 N -0.916 5.916 26 Si 0.972 3.028 27 H -0.272 1.272 28 H -0.271 1.271 29 H -0.270 1.270 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.412 0.588 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.098 0.902 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.091 0.909 48 H 0.227 0.773 49 H 0.032 0.968 50 H 0.050 0.950 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.578 29.235 1.231 30.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.007 3.993 3 C -0.346 4.346 4 C 0.391 3.609 5 O -0.469 6.469 6 N -0.364 5.364 7 C 0.015 3.985 8 C -0.125 4.125 9 H 0.129 0.871 10 C -0.171 4.171 11 C -0.161 4.161 12 C -0.071 4.071 13 C -0.173 4.173 14 C -0.015 4.015 15 O -0.328 6.328 16 C -0.018 4.018 17 C -0.176 4.176 18 C -0.106 4.106 19 N -0.156 5.156 20 N -0.115 5.115 21 C 0.148 3.852 22 C -0.593 4.593 23 H 0.070 0.930 24 C -0.179 4.179 25 N -0.554 5.554 26 Si 0.796 3.204 27 H -0.197 1.197 28 H -0.196 1.196 29 H -0.195 1.195 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.248 0.752 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.110 0.890 48 H 0.244 0.756 49 H 0.050 0.950 50 H 0.068 0.932 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.239 28.096 1.413 29.048 hybrid contribution -0.186 -0.544 -0.767 0.958 sum 7.053 27.553 0.646 28.449 Atomic orbital electron populations 1.20535 0.86032 1.03941 1.03843 1.21966 0.95905 0.86844 0.94588 1.19979 0.93329 0.93075 1.28203 1.17164 0.85127 0.83950 0.74642 1.90677 1.18153 1.84798 1.53274 1.45560 1.09823 1.05442 1.75574 1.21320 0.97111 0.79091 1.01000 1.22861 0.96665 0.93570 0.99448 0.87088 1.23015 1.01623 0.97008 0.95459 1.22913 0.98507 0.96941 0.97695 1.21523 0.95352 0.94451 0.95799 1.21991 0.95874 0.97219 1.02174 1.22671 1.02089 0.93192 0.83575 1.87875 1.30633 1.82552 1.31745 1.22715 0.83065 0.95244 1.00778 1.22136 1.02843 0.96339 0.96239 1.24504 0.97596 0.91567 0.96982 1.77086 0.98276 1.14472 1.25769 1.49095 1.03395 1.07708 1.51327 1.19367 0.95269 0.72389 0.98164 1.21381 1.47898 0.98476 0.91527 0.93025 1.25742 0.93846 0.95960 1.02318 1.69992 1.44814 1.07587 1.33039 0.85340 0.78357 0.78193 0.78539 1.19736 1.19618 1.19456 0.89993 0.91097 0.88121 0.75160 0.93083 0.92450 0.90586 0.90288 0.90960 0.88657 0.90061 0.92085 0.88590 0.91972 0.88369 0.92040 0.92279 0.89036 0.75632 0.95026 0.93244 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.21 9.57 71.24 0.68 -2.53 16 2 C 0.14 5.93 7.01 42.14 0.30 6.23 16 3 C -0.33 -11.78 6.13 -20.15 -0.12 -11.91 16 4 C 0.60 19.26 7.81 86.66 0.68 19.94 16 5 O -0.59 -22.38 14.84 -4.03 -0.06 -22.44 16 6 N -0.71 -15.57 5.55 -466.37 -2.59 -18.15 16 7 C 0.14 2.62 4.34 86.38 0.37 3.00 16 8 C -0.11 -1.26 3.27 -10.33 -0.03 -1.30 16 9 H 0.11 1.07 8.10 -2.39 -0.02 1.05 16 10 C -0.13 -1.37 7.31 31.24 0.23 -1.14 16 11 C -0.12 -1.02 7.03 31.00 0.22 -0.80 16 12 C -0.07 -0.78 0.69 -52.08 -0.04 -0.81 16 13 C -0.13 -1.80 4.07 30.62 0.12 -1.68 16 14 C 0.06 0.79 6.78 72.07 0.49 1.28 16 15 O -0.41 -6.87 10.72 -148.98 -1.60 -8.47 16 16 C 0.06 0.66 6.78 72.07 0.49 1.15 16 17 C -0.14 -1.48 5.33 30.63 0.16 -1.32 16 18 C 0.08 2.62 11.50 85.65 0.99 3.61 16 19 N -0.34 -14.39 12.50 -56.27 -0.70 -15.10 16 20 N -0.34 -15.70 3.56 -336.70 -1.20 -16.90 16 21 C 0.27 13.87 5.97 85.63 0.51 14.39 16 22 C -0.55 -30.71 9.39 25.60 0.24 -30.47 16 23 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 24 C 0.02 1.23 5.46 84.66 0.46 1.69 16 25 N -0.92 -51.43 13.28 21.45 0.28 -51.15 16 26 Si 0.97 42.77 29.54 68.60 2.03 44.80 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 29 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 30 H 0.08 3.05 8.14 -2.38 -0.02 3.03 16 31 H 0.07 2.63 7.05 -2.39 -0.02 2.62 16 32 H 0.10 3.60 6.50 -2.39 -0.02 3.58 16 33 H 0.41 6.51 7.43 -92.71 -0.69 5.82 16 34 H 0.05 1.14 7.88 -2.39 -0.02 1.12 16 35 H 0.06 1.23 7.21 -2.39 -0.02 1.21 16 36 H 0.08 0.93 7.41 -2.39 -0.02 0.91 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 0.57 7.63 -2.39 -0.02 0.56 16 39 H 0.09 0.59 8.02 -2.38 -0.02 0.57 16 40 H 0.08 1.01 7.16 -2.39 -0.02 1.00 16 41 H 0.06 1.04 7.44 -2.38 -0.02 1.02 16 42 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 43 H 0.06 0.63 7.68 -2.38 -0.02 0.61 16 44 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.06 0.54 8.12 -2.38 -0.02 0.52 16 46 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.09 0.68 8.04 -2.38 -0.02 0.66 16 48 H 0.23 4.59 7.50 -2.91 -0.02 4.57 16 49 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.05 2.58 7.02 -2.39 -0.02 2.57 16 51 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 Total: -1.00 -69.76 404.91 2.16 -67.60 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.25 Total: 20.50 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 5.75 Total: -0.68 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -4.21 Total: -101.30 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -1.66 Total: -30.91 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -69.76 2.16 -67.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893173608.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.222 kcal (2) G-P(sol) polarization free energy of solvation -69.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.63 seconds