Wall clock time and date at job start Wed Apr 1 2020 07:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38044 * 126.29173 * 2 1 4 4 C 1.47426 * 126.41739 * 359.97438 * 3 2 1 5 5 O 1.21606 * 120.00058 * 352.08792 * 4 3 2 6 6 N 1.34779 * 119.99938 * 172.09090 * 4 3 2 7 7 C 1.47427 * 125.64963 * 1.12162 * 6 4 3 8 8 C 1.54690 * 104.93929 * 204.07362 * 7 6 4 9 9 C 1.55147 * 101.67752 * 323.27584 * 8 7 6 10 10 C 1.47022 * 125.64543 * 181.42501 * 6 4 3 11 11 H 1.09001 * 109.88178 * 59.49278 * 10 6 4 12 12 C 1.52994 * 109.88561 * 298.32478 * 10 6 4 13 13 C 1.53182 * 109.54296 * 302.12782 * 12 10 6 14 14 C 1.53090 * 109.16696 * 183.15186 * 13 12 10 15 15 O 1.42909 * 109.40973 * 57.60996 * 14 13 12 16 16 C 1.42904 * 114.09907 * 298.84265 * 15 14 13 17 17 C 1.53094 * 109.41368 * 61.16121 * 16 15 14 18 18 C 1.41297 * 107.16907 * 180.25212 * 3 2 1 19 19 N 1.30451 * 108.01889 * 359.78216 * 18 3 2 20 20 N 1.34252 * 126.28843 * 179.87782 * 2 1 3 21 21 C 1.46499 * 125.75627 * 0.02562 * 20 2 1 22 22 C 1.50707 * 109.47196 * 269.71859 * 21 20 2 23 23 H 1.08000 * 119.99589 * 359.97438 * 22 21 20 24 24 C 1.37867 * 120.00143 * 179.97438 * 22 21 20 25 25 N 1.31510 * 120.00437 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99984 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47042 * 180.02562 * 26 24 22 28 28 H 1.48500 * 109.47199 * 300.00088 * 26 24 22 29 29 H 1.48499 * 109.47319 * 60.00034 * 26 24 22 30 30 H 1.08995 * 109.47128 * 270.15589 * 1 2 3 31 31 H 1.09005 * 109.46633 * 30.14721 * 1 2 3 32 32 H 1.08992 * 109.47541 * 150.14776 * 1 2 3 33 33 H 1.09002 * 110.36151 * 323.00449 * 7 6 4 34 34 H 1.09003 * 110.36438 * 85.32390 * 7 6 4 35 35 H 1.09003 * 111.09631 * 205.10451 * 8 7 6 36 36 H 1.09002 * 110.84784 * 81.33917 * 8 7 6 37 37 H 1.09003 * 110.72274 * 276.97103 * 9 8 7 38 38 H 1.08999 * 110.72351 * 153.70121 * 9 8 7 39 39 H 1.08995 * 109.54483 * 62.39594 * 12 10 6 40 40 H 1.09003 * 109.52716 * 303.06471 * 13 12 10 41 41 H 1.09003 * 109.52042 * 63.25064 * 13 12 10 42 42 H 1.09004 * 109.47765 * 297.63427 * 14 13 12 43 43 H 1.08992 * 109.49187 * 177.60131 * 14 13 12 44 44 H 1.09001 * 109.48105 * 301.17610 * 16 15 14 45 45 H 1.09000 * 109.47554 * 181.14219 * 16 15 14 46 46 H 1.08999 * 109.51737 * 182.48547 * 17 16 15 47 47 H 1.08994 * 109.52007 * 62.29383 * 17 16 15 48 48 H 1.07996 * 125.98891 * 179.80602 * 18 3 2 49 49 H 1.09007 * 109.47696 * 149.71818 * 21 20 2 50 50 H 1.09006 * 109.47286 * 29.71547 * 21 20 2 51 51 H 0.97004 * 119.99834 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.7093 2.7908 -0.1460 6 7 2.7895 3.5074 0.1601 7 6 4.2432 3.3235 0.3223 8 6 4.7255 4.5929 1.0633 9 6 3.8229 5.6863 0.4333 10 6 2.4877 4.9455 0.2090 11 1 1.8055 5.1533 1.0334 12 6 1.8611 5.3910 -1.1137 13 6 2.8171 5.0709 -2.2671 14 6 2.2172 5.5906 -3.5761 15 8 1.9790 6.9953 -3.4647 16 6 1.0559 7.3506 -2.4332 17 6 1.6093 6.9015 -1.0783 18 6 3.6591 0.6498 -0.0059 19 7 3.6340 -0.6545 -0.0045 20 7 2.3016 -1.0821 0.0023 21 6 1.8500 -2.4758 0.0047 22 6 1.7012 -2.9532 1.4264 23 1 1.9215 -2.2853 2.2461 24 6 1.2840 -4.2424 1.6806 25 7 1.0162 -5.0558 0.6826 26 14 1.1003 -4.8343 3.4429 27 1 0.6424 -6.2470 3.4453 28 1 2.4098 -4.7377 4.1365 29 1 0.1033 -3.9890 4.1476 30 1 -0.3633 0.0028 1.0276 31 1 -0.3633 0.8887 -0.5162 32 1 -0.3634 -0.8912 -0.5115 33 1 4.4489 2.4345 0.9184 34 1 4.7270 3.2486 -0.6516 35 1 5.7780 4.7900 0.8596 36 1 4.5463 4.5080 2.1351 37 1 4.2373 6.0296 -0.5146 38 1 3.6900 6.5206 1.1219 39 1 0.9172 4.8673 -1.2647 40 1 3.7776 5.5546 -2.0891 41 1 2.9584 3.9921 -2.3342 42 1 1.2763 5.0770 -3.7739 43 1 2.9125 5.4036 -4.3943 44 1 0.0999 6.8600 -2.6162 45 1 0.9150 8.4315 -2.4282 46 1 0.8868 7.1321 -0.2954 47 1 2.5453 7.4223 -0.8764 48 1 4.5449 1.2675 -0.0104 49 1 2.5824 -3.0961 -0.5120 50 1 0.8891 -2.5473 -0.5049 51 1 1.1126 -4.7488 -0.2326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897316917.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:24:10 Heat of formation + Delta-G solvation = -13.607624 kcal Electronic energy + Delta-G solvation = -31880.723709 eV Core-core repulsion = 27781.286858 eV Total energy + Delta-G solvation = -4099.436851 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.12994 -40.35133 -38.81257 -37.20383 -34.43884 -33.99990 -32.30474 -31.62319 -31.29533 -30.98470 -29.02656 -27.06514 -26.60568 -25.07339 -23.80526 -23.60940 -23.15012 -21.99302 -21.05017 -20.35232 -19.10708 -18.47517 -17.39162 -16.84904 -16.63958 -16.13796 -15.99026 -15.40965 -15.25507 -14.96093 -14.91534 -14.61734 -14.13246 -13.94338 -13.81407 -13.64729 -13.40171 -13.03457 -12.69446 -12.65309 -12.63379 -12.49814 -12.24168 -12.12009 -12.09864 -11.93033 -11.64407 -11.59400 -11.25382 -11.08961 -11.06203 -10.84605 -10.82919 -10.68316 -10.31241 -10.23691 -10.23075 -9.76848 -9.51898 -9.39012 -8.67965 -8.64797 -8.49472 -7.95286 -6.69728 -4.46213 2.10198 2.71035 2.97792 3.28579 3.31561 3.33129 3.51934 3.66869 3.79526 4.25623 4.32128 4.35360 4.52249 4.62872 4.68246 4.78838 4.82173 4.99504 5.02681 5.07446 5.13134 5.14649 5.16823 5.19854 5.35962 5.37448 5.45718 5.48923 5.54217 5.59597 5.61754 5.64614 5.66233 5.73575 5.75987 5.79983 5.85769 5.91604 6.01460 6.05733 6.19142 6.28706 6.43115 6.50937 6.58141 6.61546 6.97940 7.02686 7.52653 7.56468 7.68526 8.13985 8.27520 8.46222 8.53781 9.22839 10.67918 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.002538 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.808512 B =11030.964068 C =11471.753416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.165 3.835 3 C -0.326 4.326 4 C 0.620 3.380 5 O -0.553 6.553 6 N -0.613 5.613 7 C 0.088 3.912 8 C -0.135 4.135 9 C -0.132 4.132 10 C 0.150 3.850 11 H 0.073 0.927 12 C -0.101 4.101 13 C -0.146 4.146 14 C 0.061 3.939 15 O -0.386 6.386 16 C 0.061 3.939 17 C -0.148 4.148 18 C 0.044 3.956 19 N -0.296 5.296 20 N -0.312 5.312 21 C 0.242 3.758 22 C -0.618 4.618 23 H 0.059 0.941 24 C 0.028 3.972 25 N -0.898 5.898 26 Si 1.075 2.925 27 H -0.278 1.278 28 H -0.285 1.285 29 H -0.284 1.284 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.091 0.909 44 H 0.049 0.951 45 H 0.091 0.909 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.188 0.812 49 H 0.047 0.953 50 H 0.045 0.955 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.604 23.967 -3.534 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.028 3.972 3 C -0.342 4.342 4 C 0.413 3.587 5 O -0.432 6.432 6 N -0.347 5.347 7 C -0.035 4.035 8 C -0.173 4.173 9 C -0.170 4.170 10 C 0.046 3.954 11 H 0.091 0.909 12 C -0.120 4.120 13 C -0.183 4.183 14 C -0.016 4.016 15 O -0.305 6.305 16 C -0.015 4.015 17 C -0.186 4.186 18 C -0.142 4.142 19 N -0.116 5.116 20 N -0.088 5.088 21 C 0.124 3.876 22 C -0.656 4.656 23 H 0.078 0.922 24 C -0.177 4.177 25 N -0.533 5.533 26 Si 0.902 3.098 27 H -0.203 1.203 28 H -0.211 1.211 29 H -0.211 1.211 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.109 0.891 44 H 0.068 0.932 45 H 0.110 0.890 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.205 0.795 49 H 0.065 0.935 50 H 0.063 0.937 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.267 21.571 -2.835 22.171 hybrid contribution 0.049 1.703 -0.640 1.820 sum 4.316 23.274 -3.475 23.925 Atomic orbital electron populations 1.20586 0.86818 1.03863 1.03925 1.21445 0.94907 0.86436 0.94424 1.19600 0.93081 0.92354 1.29128 1.16928 0.83957 0.83126 0.74665 1.90672 1.16817 1.83916 1.51807 1.48179 1.07158 1.05421 1.73982 1.22687 0.81273 0.99223 1.00283 1.22768 0.99787 0.94327 1.00385 1.22823 0.94541 0.97834 1.01806 1.21449 0.96549 0.80365 0.97002 0.90879 1.21538 1.00404 0.95516 0.94578 1.22217 0.99325 1.01967 0.94827 1.22582 1.00036 0.81525 0.97452 1.87904 1.64503 1.23596 1.54462 1.22551 0.91830 1.00362 0.86798 1.22217 1.02283 0.95909 0.98211 1.24420 0.97014 0.92533 1.00261 1.77162 0.98309 1.12495 1.23623 1.49087 1.02701 1.07827 1.49197 1.19867 0.95407 0.72283 1.00027 1.22100 1.51802 1.01090 0.90630 0.92235 1.25923 0.92819 0.92452 1.06545 1.70849 1.44354 1.37933 1.00156 0.83438 0.76879 0.76476 0.73027 1.20323 1.21103 1.21053 0.89875 0.88516 0.91084 0.89202 0.91327 0.89864 0.90560 0.89900 0.90296 0.89308 0.90951 0.90802 0.93230 0.89063 0.93221 0.89042 0.90848 0.90856 0.79533 0.93540 0.93686 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 9.65 36.01 0.35 -1.37 16 2 C 0.16 3.39 7.00 -81.60 -0.57 2.82 16 3 C -0.33 -6.02 6.06 -105.07 -0.64 -6.66 16 4 C 0.62 10.34 7.64 -12.52 -0.10 10.24 16 5 O -0.55 -10.33 13.83 5.27 0.07 -10.26 16 6 N -0.61 -7.72 2.31 -164.41 -0.38 -8.10 16 7 C 0.09 0.86 5.25 -2.65 -0.01 0.84 16 8 C -0.13 -0.98 7.07 -24.71 -0.17 -1.15 16 9 C -0.13 -0.97 5.14 -24.90 -0.13 -1.10 16 10 C 0.15 1.56 2.70 -66.95 -0.18 1.37 16 11 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 12 C -0.10 -1.04 2.00 -90.44 -0.18 -1.22 16 13 C -0.15 -1.44 4.99 -26.59 -0.13 -1.57 16 14 C 0.06 0.60 6.84 37.20 0.25 0.85 16 15 O -0.39 -4.12 10.77 -35.23 -0.38 -4.50 16 16 C 0.06 0.53 6.84 37.21 0.25 0.79 16 17 C -0.15 -1.22 5.23 -26.59 -0.14 -1.36 16 18 C 0.04 0.77 10.29 -16.98 -0.17 0.60 16 19 N -0.30 -6.40 12.50 30.86 0.39 -6.02 16 20 N -0.31 -7.11 3.56 -57.77 -0.21 -7.31 16 21 C 0.24 6.01 5.28 -5.19 -0.03 5.99 16 22 C -0.62 -16.86 9.39 -34.44 -0.32 -17.18 16 23 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 24 C 0.03 0.77 5.46 -17.82 -0.10 0.68 16 25 N -0.90 -25.61 13.65 55.43 0.76 -24.85 16 26 Si 1.08 24.26 29.90 -169.99 -5.08 19.18 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.10 1.69 6.38 -51.93 -0.33 1.36 16 32 H 0.07 1.27 7.05 -51.93 -0.37 0.90 16 33 H 0.09 0.94 5.28 -51.93 -0.27 0.67 16 34 H 0.07 0.59 8.02 -51.93 -0.42 0.18 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.58 5.45 -51.93 -0.28 0.30 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 1.19 6.87 -51.93 -0.36 0.83 16 40 H 0.07 0.65 6.00 -51.93 -0.31 0.33 16 41 H 0.07 0.84 7.69 -51.93 -0.40 0.44 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.55 6.94 -51.93 -0.36 0.19 16 48 H 0.19 2.46 4.80 -52.49 -0.25 2.21 16 49 H 0.05 1.21 8.01 -51.92 -0.42 0.79 16 50 H 0.05 1.10 6.87 -51.93 -0.36 0.74 16 51 H 0.27 7.51 7.22 -40.82 -0.29 7.21 16 LS Contribution 390.50 15.07 5.88 5.88 Total: -1.00 -32.01 390.50 -8.82 -40.83 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.85 Total: 2.58 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -2.02 Total: -7.43 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.56 Total: -46.29 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.31 Total: -14.76 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -5.08 Total: 19.18 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.01 -8.82 -40.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897316917.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.225 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds