Wall clock time and date at job start Wed Apr 1 2020 07:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38044 * 126.29173 * 2 1 4 4 C 1.47426 * 126.41739 * 359.97438 * 3 2 1 5 5 O 1.21606 * 120.00058 * 352.08792 * 4 3 2 6 6 N 1.34779 * 119.99938 * 172.09090 * 4 3 2 7 7 C 1.47427 * 125.64963 * 1.12162 * 6 4 3 8 8 C 1.54690 * 104.93929 * 204.07362 * 7 6 4 9 9 C 1.55147 * 101.67752 * 323.27584 * 8 7 6 10 10 C 1.47022 * 125.64543 * 181.42501 * 6 4 3 11 11 H 1.09001 * 109.88178 * 59.49278 * 10 6 4 12 12 C 1.52994 * 109.88561 * 298.32478 * 10 6 4 13 13 C 1.53182 * 109.54296 * 302.12782 * 12 10 6 14 14 C 1.53090 * 109.16696 * 183.15186 * 13 12 10 15 15 O 1.42909 * 109.40973 * 57.60996 * 14 13 12 16 16 C 1.42904 * 114.09907 * 298.84265 * 15 14 13 17 17 C 1.53094 * 109.41368 * 61.16121 * 16 15 14 18 18 C 1.41297 * 107.16907 * 180.25212 * 3 2 1 19 19 N 1.30451 * 108.01889 * 359.78216 * 18 3 2 20 20 N 1.34252 * 126.28843 * 179.87782 * 2 1 3 21 21 C 1.46499 * 125.75627 * 0.02562 * 20 2 1 22 22 C 1.50707 * 109.47196 * 269.71859 * 21 20 2 23 23 H 1.08000 * 119.99589 * 359.97438 * 22 21 20 24 24 C 1.37867 * 120.00143 * 179.97438 * 22 21 20 25 25 N 1.31510 * 120.00437 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99984 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47042 * 180.02562 * 26 24 22 28 28 H 1.48500 * 109.47199 * 300.00088 * 26 24 22 29 29 H 1.48499 * 109.47319 * 60.00034 * 26 24 22 30 30 H 1.08995 * 109.47128 * 270.15589 * 1 2 3 31 31 H 1.09005 * 109.46633 * 30.14721 * 1 2 3 32 32 H 1.08992 * 109.47541 * 150.14776 * 1 2 3 33 33 H 1.09002 * 110.36151 * 323.00449 * 7 6 4 34 34 H 1.09003 * 110.36438 * 85.32390 * 7 6 4 35 35 H 1.09003 * 111.09631 * 205.10451 * 8 7 6 36 36 H 1.09002 * 110.84784 * 81.33917 * 8 7 6 37 37 H 1.09003 * 110.72274 * 276.97103 * 9 8 7 38 38 H 1.08999 * 110.72351 * 153.70121 * 9 8 7 39 39 H 1.08995 * 109.54483 * 62.39594 * 12 10 6 40 40 H 1.09003 * 109.52716 * 303.06471 * 13 12 10 41 41 H 1.09003 * 109.52042 * 63.25064 * 13 12 10 42 42 H 1.09004 * 109.47765 * 297.63427 * 14 13 12 43 43 H 1.08992 * 109.49187 * 177.60131 * 14 13 12 44 44 H 1.09001 * 109.48105 * 301.17610 * 16 15 14 45 45 H 1.09000 * 109.47554 * 181.14219 * 16 15 14 46 46 H 1.08999 * 109.51737 * 182.48547 * 17 16 15 47 47 H 1.08994 * 109.52007 * 62.29383 * 17 16 15 48 48 H 1.07996 * 125.98891 * 179.80602 * 18 3 2 49 49 H 1.09007 * 109.47696 * 149.71818 * 21 20 2 50 50 H 1.09006 * 109.47286 * 29.71547 * 21 20 2 51 51 H 0.97004 * 119.99834 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.7093 2.7908 -0.1460 6 7 2.7895 3.5074 0.1601 7 6 4.2432 3.3235 0.3223 8 6 4.7255 4.5929 1.0633 9 6 3.8229 5.6863 0.4333 10 6 2.4877 4.9455 0.2090 11 1 1.8055 5.1533 1.0334 12 6 1.8611 5.3910 -1.1137 13 6 2.8171 5.0709 -2.2671 14 6 2.2172 5.5906 -3.5761 15 8 1.9790 6.9953 -3.4647 16 6 1.0559 7.3506 -2.4332 17 6 1.6093 6.9015 -1.0783 18 6 3.6591 0.6498 -0.0059 19 7 3.6340 -0.6545 -0.0045 20 7 2.3016 -1.0821 0.0023 21 6 1.8500 -2.4758 0.0047 22 6 1.7012 -2.9532 1.4264 23 1 1.9215 -2.2853 2.2461 24 6 1.2840 -4.2424 1.6806 25 7 1.0162 -5.0558 0.6826 26 14 1.1003 -4.8343 3.4429 27 1 0.6424 -6.2470 3.4453 28 1 2.4098 -4.7377 4.1365 29 1 0.1033 -3.9890 4.1476 30 1 -0.3633 0.0028 1.0276 31 1 -0.3633 0.8887 -0.5162 32 1 -0.3634 -0.8912 -0.5115 33 1 4.4489 2.4345 0.9184 34 1 4.7270 3.2486 -0.6516 35 1 5.7780 4.7900 0.8596 36 1 4.5463 4.5080 2.1351 37 1 4.2373 6.0296 -0.5146 38 1 3.6900 6.5206 1.1219 39 1 0.9172 4.8673 -1.2647 40 1 3.7776 5.5546 -2.0891 41 1 2.9584 3.9921 -2.3342 42 1 1.2763 5.0770 -3.7739 43 1 2.9125 5.4036 -4.3943 44 1 0.0999 6.8600 -2.6162 45 1 0.9150 8.4315 -2.4282 46 1 0.8868 7.1321 -0.2954 47 1 2.5453 7.4223 -0.8764 48 1 4.5449 1.2675 -0.0104 49 1 2.5824 -3.0961 -0.5120 50 1 0.8891 -2.5473 -0.5049 51 1 1.1126 -4.7488 -0.2326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897316917.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:24:05 Heat of formation + Delta-G solvation = -32.610482 kcal Electronic energy + Delta-G solvation = -31881.547735 eV Core-core repulsion = 27781.286858 eV Total energy + Delta-G solvation = -4100.260877 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 6.14 seconds Orbital eigenvalues (eV) -42.54222 -41.38930 -39.77358 -38.29880 -36.25106 -35.02366 -33.92332 -32.87584 -32.37284 -31.99137 -29.94660 -28.62592 -28.26708 -25.93888 -25.50471 -24.52037 -24.27879 -22.77737 -22.37335 -21.59423 -20.15321 -19.74338 -19.29170 -18.09274 -17.60735 -17.12669 -16.94425 -16.75126 -16.43586 -16.18417 -15.76360 -15.72165 -15.65820 -15.22010 -15.15980 -14.71715 -14.50338 -14.38783 -14.15410 -13.86971 -13.72426 -13.67795 -13.46581 -13.40309 -13.30931 -13.07418 -12.95791 -12.80321 -12.60639 -12.31548 -11.98772 -11.88735 -11.82430 -11.69149 -11.61806 -11.44486 -11.42078 -11.03703 -10.75770 -10.71883 -10.55016 -10.31659 -9.76174 -9.40215 -8.87043 -6.66015 0.56908 1.23120 1.47184 1.50436 1.54269 1.76325 2.06182 2.42828 2.44850 2.94084 2.94791 3.43427 3.60591 3.63881 3.69970 3.77433 3.90792 3.95716 4.01786 4.09141 4.11727 4.15855 4.27303 4.29227 4.37337 4.42539 4.45522 4.50339 4.57001 4.61935 4.66057 4.70997 4.76797 4.82691 4.89697 4.92297 4.96257 5.01352 5.02429 5.03235 5.13752 5.15311 5.18200 5.36392 5.42334 5.46243 5.52137 5.63929 5.71478 6.06221 6.23524 6.28448 6.54308 6.69569 7.10813 7.26604 8.50359 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.002538 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.808512 B =11030.964068 C =11471.753416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.143 3.857 3 C -0.324 4.324 4 C 0.616 3.384 5 O -0.581 6.581 6 N -0.606 5.606 7 C 0.075 3.925 8 C -0.125 4.125 9 C -0.121 4.121 10 C 0.144 3.856 11 H 0.061 0.939 12 C -0.098 4.098 13 C -0.138 4.138 14 C 0.060 3.940 15 O -0.397 6.397 16 C 0.056 3.944 17 C -0.140 4.140 18 C 0.066 3.934 19 N -0.335 5.335 20 N -0.336 5.336 21 C 0.254 3.746 22 C -0.628 4.628 23 H 0.044 0.956 24 C -0.013 4.013 25 N -0.918 5.918 26 Si 1.118 2.882 27 H -0.274 1.274 28 H -0.274 1.274 29 H -0.268 1.268 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.051 0.949 40 H 0.091 0.909 41 H 0.055 0.945 42 H 0.035 0.965 43 H 0.104 0.896 44 H 0.040 0.960 45 H 0.113 0.887 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.232 0.768 49 H 0.027 0.973 50 H 0.044 0.956 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.447 26.852 -2.548 27.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.007 3.993 3 C -0.339 4.339 4 C 0.407 3.593 5 O -0.463 6.463 6 N -0.338 5.338 7 C -0.046 4.046 8 C -0.162 4.162 9 C -0.159 4.159 10 C 0.041 3.959 11 H 0.079 0.921 12 C -0.118 4.118 13 C -0.176 4.176 14 C -0.017 4.017 15 O -0.316 6.316 16 C -0.020 4.020 17 C -0.178 4.178 18 C -0.120 4.120 19 N -0.155 5.155 20 N -0.113 5.113 21 C 0.135 3.865 22 C -0.666 4.666 23 H 0.063 0.937 24 C -0.214 4.214 25 N -0.553 5.553 26 Si 0.939 3.061 27 H -0.199 1.199 28 H -0.199 1.199 29 H -0.194 1.194 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.122 0.878 44 H 0.058 0.942 45 H 0.131 0.869 46 H 0.099 0.901 47 H 0.109 0.891 48 H 0.248 0.752 49 H 0.045 0.955 50 H 0.062 0.938 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.141 24.509 -1.860 25.335 hybrid contribution -0.496 0.968 -1.000 1.478 sum 5.644 25.478 -2.860 26.252 Atomic orbital electron populations 1.20551 0.85928 1.04063 1.03866 1.21930 0.95870 0.86670 0.94790 1.19934 0.93218 0.93081 1.27689 1.16739 0.84185 0.83151 0.75186 1.90655 1.18123 1.84219 1.53259 1.48190 1.08033 1.05770 1.71839 1.22970 0.79446 1.00582 1.01645 1.22768 1.01237 0.92371 0.99859 1.22825 0.92186 0.97950 1.02929 1.21669 0.98482 0.79188 0.96555 0.92078 1.21447 0.98776 0.96738 0.94809 1.22147 0.99965 1.00920 0.94551 1.22606 0.99723 0.81364 0.98018 1.87889 1.64861 1.23625 1.55226 1.22715 0.91144 1.01571 0.86620 1.22174 1.03338 0.94151 0.98139 1.25156 0.98140 0.91470 0.97209 1.77113 0.98023 1.14551 1.25782 1.48861 1.03576 1.07282 1.51571 1.19453 0.94726 0.73704 0.98600 1.22270 1.51781 1.01188 0.91359 0.93733 1.27297 0.91854 0.92678 1.09554 1.70945 1.45759 1.38372 1.00218 0.82907 0.77749 0.76423 0.69069 1.19904 1.19919 1.19352 0.89993 0.87821 0.91233 0.89961 0.89498 0.86999 0.90705 0.88776 0.88260 0.93073 0.89073 0.92583 0.94687 0.87810 0.94195 0.86916 0.90149 0.89066 0.75189 0.95471 0.93806 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.28 9.65 71.24 0.69 -2.59 16 2 C 0.14 6.05 7.00 42.14 0.30 6.34 16 3 C -0.32 -11.97 6.06 -20.15 -0.12 -12.09 16 4 C 0.62 20.42 7.64 86.66 0.66 21.08 16 5 O -0.58 -22.17 13.83 -4.05 -0.06 -22.22 16 6 N -0.61 -14.31 2.31 -792.31 -1.83 -16.14 16 7 C 0.08 1.23 5.25 86.78 0.46 1.68 16 8 C -0.12 -1.27 7.07 31.91 0.23 -1.04 16 9 C -0.12 -1.27 5.14 31.78 0.16 -1.11 16 10 C 0.14 2.69 2.70 45.34 0.12 2.82 16 11 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 12 C -0.10 -1.91 2.00 -10.67 -0.02 -1.93 16 13 C -0.14 -2.49 4.99 30.69 0.15 -2.34 16 14 C 0.06 1.12 6.84 72.01 0.49 1.61 16 15 O -0.40 -7.79 10.77 -148.98 -1.60 -9.39 16 16 C 0.06 0.88 6.84 72.01 0.49 1.37 16 17 C -0.14 -1.98 5.23 30.69 0.16 -1.82 16 18 C 0.07 2.27 10.29 85.65 0.88 3.15 16 19 N -0.33 -14.65 12.50 -56.27 -0.70 -15.35 16 20 N -0.34 -15.82 3.56 -336.68 -1.20 -17.02 16 21 C 0.25 13.20 5.28 85.64 0.45 13.65 16 22 C -0.63 -35.19 9.39 25.60 0.24 -34.95 16 23 H 0.04 2.58 7.81 -2.91 -0.02 2.56 16 24 C -0.01 -0.73 5.46 84.65 0.46 -0.27 16 25 N -0.92 -53.35 13.65 21.44 0.29 -53.05 16 26 Si 1.12 48.73 29.90 68.60 2.05 50.79 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 28 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 29 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 30 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.10 3.76 6.38 -2.38 -0.02 3.74 16 32 H 0.07 2.61 7.05 -2.39 -0.02 2.59 16 33 H 0.08 1.48 5.28 -2.39 -0.01 1.47 16 34 H 0.09 1.16 8.02 -2.39 -0.02 1.14 16 35 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 0.83 5.45 -2.39 -0.01 0.82 16 38 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.05 1.40 6.87 -2.39 -0.02 1.38 16 40 H 0.09 1.30 6.00 -2.39 -0.01 1.29 16 41 H 0.06 1.21 7.69 -2.39 -0.02 1.20 16 42 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.10 1.64 8.14 -2.39 -0.02 1.63 16 44 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.09 1.00 6.94 -2.39 -0.02 0.98 16 48 H 0.23 5.48 4.80 -2.91 -0.01 5.46 16 49 H 0.03 1.49 8.01 -2.38 -0.02 1.47 16 50 H 0.04 2.25 6.87 -2.38 -0.02 2.23 16 51 H 0.26 15.10 7.22 -92.71 -0.67 14.43 16 Total: -1.00 -71.99 390.50 3.80 -68.19 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 1.04 Total: 20.65 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 5.80 Total: -6.44 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -3.44 Total: -101.57 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -1.66 Total: -31.62 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 2.05 Total: 50.79 kcal Total: -71.99 3.80 -68.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897316917.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.580 kcal (2) G-P(sol) polarization free energy of solvation -71.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.14 seconds