Wall clock time and date at job start Wed Apr 1 2020 07:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38038 * 126.29771 * 2 1 4 4 C 1.47434 * 126.41176 * 359.97438 * 3 2 1 5 5 O 1.21608 * 119.99913 * 0.32989 * 4 3 2 6 6 N 1.34771 * 119.99927 * 180.32798 * 4 3 2 7 7 C 1.46504 * 120.00080 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.47283 * 174.92396 * 7 6 4 9 9 C 1.52999 * 112.82348 * 294.88395 * 8 7 6 10 10 O 1.42898 * 109.47189 * 294.85648 * 9 8 7 11 11 C 1.53950 * 113.57941 * 163.79170 * 8 7 6 12 12 C 1.53065 * 86.72744 * 220.68962 * 11 8 7 13 13 C 1.52909 * 121.17827 * 150.58850 * 12 11 8 14 14 C 1.53953 * 86.78089 * 100.75000 * 13 12 11 15 15 C 1.52911 * 121.06917 * 259.12515 * 12 11 8 16 16 C 1.52908 * 88.06873 * 24.83712 * 12 11 8 17 17 C 1.41285 * 107.17433 * 180.25704 * 3 2 1 18 18 N 1.30447 * 108.02203 * 359.73913 * 17 3 2 19 19 N 1.34264 * 126.29018 * 179.80853 * 2 1 3 20 20 C 1.46507 * 125.75197 * 0.02562 * 19 2 1 21 21 C 1.50693 * 109.47038 * 269.71499 * 20 19 2 22 22 H 1.08006 * 120.00378 * 359.97438 * 21 20 19 23 23 C 1.37880 * 119.99993 * 179.72503 * 21 20 19 24 24 N 1.31509 * 119.99908 * 0.27375 * 23 21 20 25 25 Si 1.86805 * 119.99968 * 180.27569 * 23 21 20 26 26 H 1.48494 * 109.47207 * 59.99879 * 25 23 21 27 27 H 1.48497 * 109.46905 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47091 * 299.99793 * 25 23 21 29 29 H 1.08991 * 109.47471 * 270.18667 * 1 2 3 30 30 H 1.09007 * 109.46798 * 30.19041 * 1 2 3 31 31 H 1.08996 * 109.46867 * 150.18191 * 1 2 3 32 32 H 0.96998 * 120.00569 * 0.02562 * 6 4 3 33 33 H 1.08993 * 109.47145 * 294.92503 * 7 6 4 34 34 H 1.09005 * 109.46928 * 54.92618 * 7 6 4 35 35 H 1.08996 * 109.47410 * 54.85510 * 9 8 7 36 36 H 1.09010 * 109.47128 * 174.85633 * 9 8 7 37 37 H 0.96697 * 114.00186 * 180.02562 * 10 9 8 38 38 H 1.08995 * 113.66300 * 335.14165 * 11 8 7 39 39 H 1.09001 * 113.65891 * 106.19262 * 11 8 7 40 40 H 1.08993 * 113.67036 * 215.22400 * 13 12 11 41 41 H 1.09003 * 113.65974 * 346.28181 * 13 12 11 42 42 H 1.08999 * 113.58188 * 270.13374 * 14 13 12 43 43 H 1.09004 * 113.64561 * 139.35388 * 14 13 12 44 44 H 1.09003 * 113.66449 * 13.63592 * 15 12 11 45 45 H 1.09003 * 113.66259 * 144.68616 * 15 12 11 46 46 H 1.09003 * 113.66496 * 220.69365 * 16 12 11 47 47 H 1.08996 * 113.66538 * 89.63706 * 16 12 11 48 48 H 1.08005 * 125.98795 * 179.78037 * 17 3 2 49 49 H 1.08993 * 109.46834 * 149.71418 * 20 19 2 50 50 H 1.09006 * 109.46877 * 29.71747 * 20 19 2 51 51 H 0.97002 * 120.00073 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1125 0.0000 4 6 1.8859 2.5202 -0.0005 5 8 0.6997 2.7878 0.0050 6 7 2.8001 3.5105 -0.0071 7 6 2.3647 4.9094 -0.0071 8 6 3.5857 5.8236 0.1124 9 6 4.3126 5.6711 1.4500 10 8 3.4587 6.1089 2.5088 11 6 3.2989 7.2872 -0.2694 12 6 4.6601 7.2794 -0.9693 13 6 4.9288 8.1635 -2.1876 14 6 5.6549 9.1203 -1.2246 15 6 5.8900 7.9045 -0.3100 16 6 4.5222 5.7629 -1.1080 17 6 3.6590 0.6497 -0.0061 18 7 3.6340 -0.6546 -0.0038 19 7 2.3017 -1.0822 0.0036 20 6 1.8500 -2.4759 0.0077 21 6 1.7013 -2.9515 1.4299 22 1 1.9217 -2.2828 2.2489 23 6 1.2790 -4.2389 1.6857 24 7 1.0111 -5.0534 0.6885 25 14 1.0873 -4.8261 3.4487 26 1 0.0907 -3.9759 4.1480 27 1 0.6249 -6.2372 3.4529 28 1 2.3947 -4.7320 4.1466 29 1 -0.3634 0.0033 1.0276 30 1 -0.3633 0.8883 -0.5168 31 1 -0.3633 -0.8916 -0.5110 32 1 3.7463 3.2972 -0.0119 33 1 1.8381 5.1260 -0.9365 34 1 1.6974 5.0822 0.8373 35 1 4.5747 4.6244 1.6038 36 1 5.2199 6.2754 1.4414 37 1 3.8556 6.0407 3.3879 38 1 2.4568 7.4044 -0.9515 39 1 3.2498 7.9608 0.5861 40 1 5.5860 7.7037 -2.9256 41 1 4.0264 8.5877 -2.6279 42 1 5.0028 9.8759 -0.7865 43 1 6.5728 9.5408 -1.6355 44 1 5.7555 8.1217 0.7497 45 1 6.8174 7.3717 -0.5203 46 1 5.4491 5.2204 -0.9216 47 1 4.0246 5.4510 -2.0262 48 1 4.5449 1.2675 -0.0110 49 1 2.5823 -3.0966 -0.5083 50 1 0.8890 -2.5479 -0.5019 51 1 0.7144 -5.9592 0.8685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897597227.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:29:03 Heat of formation + Delta-G solvation = 14.294984 kcal Electronic energy + Delta-G solvation = -30597.494834 eV Core-core repulsion = 26499.267931 eV Total energy + Delta-G solvation = -4098.226903 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.33179 -40.70889 -38.67650 -37.22230 -35.53087 -33.96045 -33.55185 -32.03027 -31.10723 -28.57485 -27.40583 -26.77287 -26.42227 -26.05496 -25.45939 -23.47101 -23.01534 -21.83451 -19.80547 -19.54565 -18.77358 -18.19130 -17.60339 -17.12667 -16.75628 -15.92072 -15.74448 -15.66747 -15.21522 -15.06619 -14.92139 -14.53204 -14.43942 -13.98211 -13.73107 -13.45916 -13.18313 -13.05136 -12.89128 -12.59928 -12.45530 -12.41135 -12.19678 -12.08967 -12.01061 -11.81739 -11.74481 -11.44803 -11.16967 -11.11953 -10.87080 -10.86266 -10.49173 -10.40297 -10.36297 -10.35458 -10.15530 -9.94299 -9.87864 -9.32558 -8.84539 -8.69871 -8.56676 -7.87391 -6.32596 -4.40363 2.24242 2.82385 3.19579 3.20647 3.24490 3.29838 3.54750 3.86339 3.98137 4.03991 4.10837 4.22738 4.25092 4.39752 4.44951 4.58654 4.85135 4.89422 5.01155 5.06991 5.13185 5.19201 5.24508 5.30511 5.35220 5.36969 5.48199 5.50623 5.54046 5.57331 5.60875 5.65979 5.71432 5.76866 5.82476 5.89951 5.97374 6.05571 6.07119 6.16177 6.21268 6.45637 6.59303 6.70628 6.82209 6.92196 7.18157 7.38069 7.57137 7.78327 7.79674 7.84164 8.40207 8.64388 8.70107 9.26303 10.75554 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021777 B = 0.002031 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.460362 B =13783.374419 C =13936.456924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.164 3.836 3 C -0.331 4.331 4 C 0.603 3.397 5 O -0.556 6.556 6 N -0.731 5.731 7 C 0.144 3.856 8 C -0.091 4.091 9 C 0.097 3.903 10 O -0.566 6.566 11 C -0.093 4.093 12 C -0.106 4.106 13 C -0.128 4.128 14 C -0.140 4.140 15 C -0.119 4.119 16 C -0.115 4.115 17 C 0.056 3.944 18 N -0.296 5.296 19 N -0.314 5.314 20 C 0.251 3.749 21 C -0.540 4.540 22 H 0.064 0.936 23 C 0.067 3.933 24 N -0.890 5.890 25 Si 0.908 3.092 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.394 0.606 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.379 0.621 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.092 0.908 48 H 0.173 0.827 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.851 26.006 -3.079 27.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.027 3.973 3 C -0.347 4.347 4 C 0.393 3.607 5 O -0.436 6.436 6 N -0.383 5.383 7 C 0.020 3.980 8 C -0.091 4.091 9 C 0.020 3.980 10 O -0.372 6.372 11 C -0.131 4.131 12 C -0.106 4.106 13 C -0.165 4.165 14 C -0.177 4.177 15 C -0.156 4.156 16 C -0.152 4.152 17 C -0.131 4.131 18 N -0.116 5.116 19 N -0.091 5.091 20 C 0.134 3.866 21 C -0.578 4.578 22 H 0.083 0.917 23 C -0.137 4.137 24 N -0.527 5.527 25 Si 0.735 3.265 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.199 1.199 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.228 0.772 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.226 0.774 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.090 0.910 47 H 0.111 0.889 48 H 0.190 0.810 49 H 0.074 0.926 50 H 0.074 0.926 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.208 24.849 -3.634 26.420 hybrid contribution 0.481 -0.018 1.418 1.497 sum 8.688 24.831 -2.216 26.400 Atomic orbital electron populations 1.20561 0.86838 1.03719 1.03911 1.21480 0.94958 0.86545 0.94316 1.19697 0.93068 0.92613 1.29289 1.17295 0.85035 0.83866 0.74519 1.90692 1.16743 1.84485 1.51660 1.45650 1.09510 1.05513 1.77650 1.21125 0.95170 0.79592 1.02125 1.22022 0.96306 0.96788 0.93987 1.21906 0.91824 0.98217 0.86089 1.86468 1.44546 1.88390 1.17746 1.22627 0.95628 0.94955 0.99878 1.22481 0.95934 0.94780 0.97398 1.22744 1.00593 0.97106 0.96076 1.22811 1.00539 0.96545 0.97852 1.22705 0.96967 0.96854 0.99050 1.22884 0.99275 0.95630 0.97429 1.23676 0.96292 0.92616 1.00485 1.77121 0.98675 1.12262 1.23570 1.49352 1.02453 1.08288 1.49018 1.19841 0.96387 0.70937 0.99405 1.21205 1.47381 0.98237 0.90989 0.91737 1.24924 0.94453 0.95989 0.98309 1.69902 1.44345 1.07226 1.31244 0.86377 0.78864 0.77734 0.83526 1.19840 1.20875 1.19924 0.89874 0.88833 0.90930 0.77182 0.91969 0.90763 0.93322 0.93049 0.77408 0.89427 0.90513 0.89989 0.91393 0.90290 0.91632 0.91324 0.89877 0.91025 0.88923 0.80976 0.92557 0.92569 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.56 36.00 0.34 -1.37 16 2 C 0.16 3.40 7.01 -81.60 -0.57 2.83 16 3 C -0.33 -6.15 6.13 -105.07 -0.64 -6.80 16 4 C 0.60 10.29 7.81 -12.52 -0.10 10.20 16 5 O -0.56 -11.03 14.84 5.27 0.08 -10.95 16 6 N -0.73 -9.23 5.20 -61.38 -0.32 -9.55 16 7 C 0.14 1.65 4.92 -4.04 -0.02 1.63 16 8 C -0.09 -0.75 0.62 -153.53 -0.10 -0.85 16 9 C 0.10 0.77 6.18 37.16 0.23 1.00 16 10 O -0.57 -5.12 13.19 -35.23 -0.46 -5.58 16 11 C -0.09 -0.72 6.93 -26.20 -0.18 -0.90 16 12 C -0.11 -0.70 0.97 -154.63 -0.15 -0.85 16 13 C -0.13 -0.79 7.84 -26.28 -0.21 -0.99 16 14 C -0.14 -0.80 8.08 -25.75 -0.21 -1.01 16 15 C -0.12 -0.70 6.70 -26.28 -0.18 -0.87 16 16 C -0.11 -0.81 6.72 -26.28 -0.18 -0.99 16 17 C 0.06 0.98 11.50 -16.98 -0.20 0.79 16 18 N -0.30 -6.40 12.50 30.86 0.39 -6.01 16 19 N -0.31 -7.17 3.56 -57.77 -0.21 -7.38 16 20 C 0.25 6.31 5.97 -5.19 -0.03 6.28 16 21 C -0.54 -14.64 9.39 -34.44 -0.32 -14.97 16 22 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 23 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 24 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 25 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 30 H 0.09 1.67 6.52 -51.93 -0.34 1.33 16 31 H 0.07 1.31 7.05 -51.93 -0.37 0.94 16 32 H 0.39 4.07 6.79 -40.82 -0.28 3.79 16 33 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 34 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16 35 H 0.05 0.39 7.49 -51.93 -0.39 0.00 16 36 H 0.05 0.34 5.87 -51.92 -0.31 0.03 16 37 H 0.38 1.94 9.12 45.56 0.42 2.35 16 38 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16 39 H 0.08 0.64 8.00 -51.93 -0.42 0.22 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.41 7.35 -51.93 -0.38 0.03 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.46 8.10 -51.93 -0.42 0.03 16 47 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 48 H 0.17 2.15 7.50 -52.48 -0.39 1.76 16 49 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 50 H 0.06 1.40 7.01 -51.93 -0.36 1.04 16 51 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 411.28 15.07 6.20 6.20 Total: -1.00 -32.25 411.28 -8.62 -40.87 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.41 Total: 5.63 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.60 Total: -5.16 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.60 Total: -46.91 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.39 Total: -16.53 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.25 -8.62 -40.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897597227.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.163 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds