Wall clock time and date at job start Wed Apr 1 2020 07:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38038 * 126.29771 * 2 1 4 4 C 1.47434 * 126.41176 * 359.97438 * 3 2 1 5 5 O 1.21608 * 119.99913 * 0.32989 * 4 3 2 6 6 N 1.34771 * 119.99927 * 180.32798 * 4 3 2 7 7 C 1.46504 * 120.00080 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.47283 * 174.92396 * 7 6 4 9 9 C 1.52999 * 112.82348 * 294.88395 * 8 7 6 10 10 O 1.42898 * 109.47189 * 294.85648 * 9 8 7 11 11 C 1.53950 * 113.57941 * 163.79170 * 8 7 6 12 12 C 1.53065 * 86.72744 * 220.68962 * 11 8 7 13 13 C 1.52909 * 121.17827 * 150.58850 * 12 11 8 14 14 C 1.53953 * 86.78089 * 100.75000 * 13 12 11 15 15 C 1.52911 * 121.06917 * 259.12515 * 12 11 8 16 16 C 1.52908 * 88.06873 * 24.83712 * 12 11 8 17 17 C 1.41285 * 107.17433 * 180.25704 * 3 2 1 18 18 N 1.30447 * 108.02203 * 359.73913 * 17 3 2 19 19 N 1.34264 * 126.29018 * 179.80853 * 2 1 3 20 20 C 1.46507 * 125.75197 * 0.02562 * 19 2 1 21 21 C 1.50693 * 109.47038 * 269.71499 * 20 19 2 22 22 H 1.08006 * 120.00378 * 359.97438 * 21 20 19 23 23 C 1.37880 * 119.99993 * 179.72503 * 21 20 19 24 24 N 1.31509 * 119.99908 * 0.27375 * 23 21 20 25 25 Si 1.86805 * 119.99968 * 180.27569 * 23 21 20 26 26 H 1.48494 * 109.47207 * 59.99879 * 25 23 21 27 27 H 1.48497 * 109.46905 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47091 * 299.99793 * 25 23 21 29 29 H 1.08991 * 109.47471 * 270.18667 * 1 2 3 30 30 H 1.09007 * 109.46798 * 30.19041 * 1 2 3 31 31 H 1.08996 * 109.46867 * 150.18191 * 1 2 3 32 32 H 0.96998 * 120.00569 * 0.02562 * 6 4 3 33 33 H 1.08993 * 109.47145 * 294.92503 * 7 6 4 34 34 H 1.09005 * 109.46928 * 54.92618 * 7 6 4 35 35 H 1.08996 * 109.47410 * 54.85510 * 9 8 7 36 36 H 1.09010 * 109.47128 * 174.85633 * 9 8 7 37 37 H 0.96697 * 114.00186 * 180.02562 * 10 9 8 38 38 H 1.08995 * 113.66300 * 335.14165 * 11 8 7 39 39 H 1.09001 * 113.65891 * 106.19262 * 11 8 7 40 40 H 1.08993 * 113.67036 * 215.22400 * 13 12 11 41 41 H 1.09003 * 113.65974 * 346.28181 * 13 12 11 42 42 H 1.08999 * 113.58188 * 270.13374 * 14 13 12 43 43 H 1.09004 * 113.64561 * 139.35388 * 14 13 12 44 44 H 1.09003 * 113.66449 * 13.63592 * 15 12 11 45 45 H 1.09003 * 113.66259 * 144.68616 * 15 12 11 46 46 H 1.09003 * 113.66496 * 220.69365 * 16 12 11 47 47 H 1.08996 * 113.66538 * 89.63706 * 16 12 11 48 48 H 1.08005 * 125.98795 * 179.78037 * 17 3 2 49 49 H 1.08993 * 109.46834 * 149.71418 * 20 19 2 50 50 H 1.09006 * 109.46877 * 29.71747 * 20 19 2 51 51 H 0.97002 * 120.00073 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1125 0.0000 4 6 1.8859 2.5202 -0.0005 5 8 0.6997 2.7878 0.0050 6 7 2.8001 3.5105 -0.0071 7 6 2.3647 4.9094 -0.0071 8 6 3.5857 5.8236 0.1124 9 6 4.3126 5.6711 1.4500 10 8 3.4587 6.1089 2.5088 11 6 3.2989 7.2872 -0.2694 12 6 4.6601 7.2794 -0.9693 13 6 4.9288 8.1635 -2.1876 14 6 5.6549 9.1203 -1.2246 15 6 5.8900 7.9045 -0.3100 16 6 4.5222 5.7629 -1.1080 17 6 3.6590 0.6497 -0.0061 18 7 3.6340 -0.6546 -0.0038 19 7 2.3017 -1.0822 0.0036 20 6 1.8500 -2.4759 0.0077 21 6 1.7013 -2.9515 1.4299 22 1 1.9217 -2.2828 2.2489 23 6 1.2790 -4.2389 1.6857 24 7 1.0111 -5.0534 0.6885 25 14 1.0873 -4.8261 3.4487 26 1 0.0907 -3.9759 4.1480 27 1 0.6249 -6.2372 3.4529 28 1 2.3947 -4.7320 4.1466 29 1 -0.3634 0.0033 1.0276 30 1 -0.3633 0.8883 -0.5168 31 1 -0.3633 -0.8916 -0.5110 32 1 3.7463 3.2972 -0.0119 33 1 1.8381 5.1260 -0.9365 34 1 1.6974 5.0822 0.8373 35 1 4.5747 4.6244 1.6038 36 1 5.2199 6.2754 1.4414 37 1 3.8556 6.0407 3.3879 38 1 2.4568 7.4044 -0.9515 39 1 3.2498 7.9608 0.5861 40 1 5.5860 7.7037 -2.9256 41 1 4.0264 8.5877 -2.6279 42 1 5.0028 9.8759 -0.7865 43 1 6.5728 9.5408 -1.6355 44 1 5.7555 8.1217 0.7497 45 1 6.8174 7.3717 -0.5203 46 1 5.4491 5.2204 -0.9216 47 1 4.0246 5.4510 -2.0262 48 1 4.5449 1.2675 -0.0110 49 1 2.5823 -3.0966 -0.5083 50 1 0.8890 -2.5479 -0.5019 51 1 0.7144 -5.9592 0.8685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897597227.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:29:01 Heat of formation + Delta-G solvation = -7.311550 kcal Electronic energy + Delta-G solvation = -30598.431764 eV Core-core repulsion = 26499.267931 eV Total energy + Delta-G solvation = -4099.163833 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.33130 -41.87117 -39.96689 -37.89441 -36.30693 -35.81409 -34.69541 -33.74159 -32.73298 -29.81274 -28.70801 -28.11618 -27.28992 -26.71449 -26.15274 -25.26859 -23.74470 -23.14834 -21.24146 -20.74363 -19.84537 -18.86191 -18.72804 -18.41824 -18.23033 -17.04745 -16.75612 -16.53213 -16.38214 -16.11316 -16.08728 -15.90552 -15.64586 -15.27420 -14.93990 -14.51023 -14.34049 -14.06740 -14.06434 -13.85449 -13.69332 -13.58105 -13.48656 -13.13915 -13.07158 -12.97540 -12.87706 -12.69361 -12.62651 -12.39710 -12.30293 -11.88169 -11.77902 -11.68793 -11.44831 -11.00434 -10.94891 -10.93600 -10.79717 -10.75981 -10.44020 -10.26408 -10.05271 -9.41966 -8.37923 -6.54312 0.69146 1.33394 1.38497 1.38843 1.47352 1.65583 2.31341 2.37395 2.57305 2.94101 3.23217 3.46201 3.57023 3.61086 3.74637 3.78213 3.89389 3.93132 4.00453 4.13952 4.22437 4.25010 4.28607 4.51625 4.56095 4.61711 4.63537 4.66360 4.77264 4.78671 4.86752 4.87681 4.91415 4.93851 4.96988 4.99216 5.06383 5.12856 5.15376 5.16471 5.18629 5.24089 5.41216 5.48425 5.55071 5.59080 5.67911 5.69426 5.74741 6.04484 6.54230 6.65802 6.85539 6.94039 7.16517 7.39779 8.69698 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021777 B = 0.002031 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.460362 B =13783.374419 C =13936.456924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.143 3.857 3 C -0.329 4.329 4 C 0.602 3.398 5 O -0.587 6.587 6 N -0.708 5.708 7 C 0.147 3.853 8 C -0.088 4.088 9 C 0.096 3.904 10 O -0.589 6.589 11 C -0.095 4.095 12 C -0.102 4.102 13 C -0.129 4.129 14 C -0.140 4.140 15 C -0.115 4.115 16 C -0.110 4.110 17 C 0.080 3.920 18 N -0.335 5.335 19 N -0.338 5.338 20 C 0.267 3.733 21 C -0.556 4.556 22 H 0.051 0.949 23 C 0.023 3.977 24 N -0.916 5.916 25 Si 0.971 3.029 26 H -0.268 1.268 27 H -0.273 1.273 28 H -0.272 1.272 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.409 0.591 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.394 0.606 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.226 0.774 49 H 0.032 0.968 50 H 0.050 0.950 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.589 27.615 -2.488 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.007 3.993 3 C -0.344 4.344 4 C 0.392 3.608 5 O -0.469 6.469 6 N -0.359 5.359 7 C 0.023 3.977 8 C -0.089 4.089 9 C 0.019 3.981 10 O -0.397 6.397 11 C -0.133 4.133 12 C -0.102 4.102 13 C -0.167 4.167 14 C -0.177 4.177 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.107 4.107 18 N -0.155 5.155 19 N -0.115 5.115 20 C 0.149 3.851 21 C -0.594 4.594 22 H 0.070 0.930 23 C -0.178 4.178 24 N -0.554 5.554 25 Si 0.795 3.205 26 H -0.192 1.192 27 H -0.197 1.197 28 H -0.197 1.197 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.246 0.754 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.244 0.756 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.111 0.889 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.243 0.757 49 H 0.050 0.950 50 H 0.068 0.932 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.985 26.492 -3.042 28.474 hybrid contribution -0.039 -0.365 1.201 1.256 sum 9.946 26.127 -1.841 28.017 Atomic orbital electron populations 1.20530 0.86061 1.03944 1.03817 1.21951 0.95881 0.86832 0.94598 1.19952 0.93360 0.92956 1.28179 1.17170 0.85087 0.83934 0.74636 1.90681 1.18186 1.84790 1.53258 1.45452 1.09655 1.05263 1.75578 1.21156 0.96472 0.79170 1.00857 1.22037 0.95361 0.96209 0.95248 1.21978 0.92100 0.98668 0.85388 1.86434 1.45650 1.88540 1.19033 1.22620 0.96507 0.94359 0.99772 1.22424 0.95479 0.94544 0.97730 1.22773 1.00664 0.97138 0.96076 1.22814 1.00754 0.96492 0.97665 1.22724 0.96822 0.96727 0.98982 1.22872 0.99344 0.96168 0.96353 1.24470 0.97518 0.91579 0.97091 1.77081 0.98264 1.14401 1.25705 1.49090 1.03379 1.07699 1.51303 1.19364 0.95286 0.72363 0.98137 1.21353 1.47906 0.98581 0.91541 0.93043 1.25736 0.93831 0.95933 1.02323 1.69986 1.44638 1.07620 1.33150 0.85405 0.78832 0.77668 0.78619 1.19244 1.19741 1.19749 0.90076 0.88141 0.91034 0.75417 0.92325 0.93214 0.93158 0.91227 0.75629 0.89791 0.91147 0.89428 0.91755 0.90529 0.90927 0.91354 0.88898 0.89526 0.89330 0.75742 0.94982 0.93237 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.25 9.56 71.24 0.68 -2.56 16 2 C 0.14 5.99 7.01 42.14 0.30 6.28 16 3 C -0.33 -11.87 6.13 -20.15 -0.12 -11.99 16 4 C 0.60 19.85 7.81 86.67 0.68 20.53 16 5 O -0.59 -23.10 14.84 -4.06 -0.06 -23.16 16 6 N -0.71 -16.44 5.20 -466.36 -2.42 -18.86 16 7 C 0.15 3.20 4.92 86.38 0.43 3.62 16 8 C -0.09 -1.30 0.62 -51.55 -0.03 -1.33 16 9 C 0.10 1.28 6.18 71.98 0.45 1.73 16 10 O -0.59 -9.69 13.19 -148.98 -1.96 -11.66 16 11 C -0.09 -1.34 6.93 30.94 0.21 -1.12 16 12 C -0.10 -1.11 0.97 -52.26 -0.05 -1.16 16 13 C -0.13 -1.32 7.84 30.89 0.24 -1.08 16 14 C -0.14 -1.29 8.08 31.23 0.25 -1.04 16 15 C -0.12 -1.04 6.70 30.88 0.21 -0.83 16 16 C -0.11 -1.26 6.72 30.89 0.21 -1.05 16 17 C 0.08 2.63 11.50 85.65 0.99 3.62 16 18 N -0.33 -14.32 12.50 -56.28 -0.70 -15.02 16 19 N -0.34 -15.70 3.56 -336.70 -1.20 -16.89 16 20 C 0.27 13.90 5.97 85.63 0.51 14.41 16 21 C -0.56 -30.80 9.39 25.60 0.24 -30.56 16 22 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 23 C 0.02 1.26 5.46 84.66 0.46 1.72 16 24 N -0.92 -51.46 13.29 21.45 0.28 -51.17 16 25 Si 0.97 42.82 29.54 68.60 2.03 44.85 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 28 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 29 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.10 3.63 6.52 -2.38 -0.02 3.62 16 31 H 0.07 2.67 7.05 -2.39 -0.02 2.65 16 32 H 0.41 7.06 6.79 -92.71 -0.63 6.43 16 33 H 0.06 1.34 8.08 -2.39 -0.02 1.32 16 34 H 0.05 1.36 7.92 -2.38 -0.02 1.34 16 35 H 0.05 0.65 7.49 -2.39 -0.02 0.63 16 36 H 0.07 0.69 5.87 -2.38 -0.01 0.67 16 37 H 0.39 3.36 9.12 -74.06 -0.68 2.69 16 38 H 0.08 1.23 8.05 -2.39 -0.02 1.21 16 39 H 0.07 1.09 8.00 -2.39 -0.02 1.07 16 40 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.07 0.64 7.35 -2.39 -0.02 0.62 16 45 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.09 0.76 8.10 -2.39 -0.02 0.74 16 47 H 0.09 1.12 8.10 -2.39 -0.02 1.10 16 48 H 0.23 4.61 7.50 -2.91 -0.02 4.59 16 49 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.05 2.59 7.01 -2.38 -0.02 2.57 16 51 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -70.63 411.28 1.25 -69.38 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -0.35 Total: 23.34 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 5.64 Total: -0.81 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -4.04 Total: -101.95 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -2.02 Total: -34.82 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -70.63 1.25 -69.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897597227.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.069 kcal (2) G-P(sol) polarization free energy of solvation -70.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds