Wall clock time and date at job start Wed Apr 1 2020 07:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38041 * 126.29083 * 2 1 4 4 C 1.47423 * 126.41747 * 359.97438 * 3 2 1 5 5 O 1.21604 * 120.00260 * 7.02213 * 4 3 2 6 6 N 1.34786 * 120.00256 * 187.01966 * 4 3 2 7 7 C 1.47417 * 125.64531 * 5.93955 * 6 4 3 8 8 C 1.54910 * 104.83304 * 155.88773 * 7 6 4 9 9 C 1.55160 * 101.57820 * 37.00995 * 8 7 6 10 10 C 1.47022 * 125.64856 * 185.95626 * 6 4 3 11 11 H 1.08998 * 110.01082 * 300.53179 * 10 6 4 12 12 C 1.52998 * 109.88111 * 61.62573 * 10 6 4 13 13 H 1.08998 * 110.54314 * 294.07524 * 12 10 6 14 14 C 1.54897 * 110.48709 * 56.68453 * 12 10 6 15 15 C 1.54889 * 102.91549 * 156.52910 * 14 12 10 16 16 C 1.54469 * 104.09922 * 322.30266 * 15 14 12 17 17 C 1.53874 * 106.68751 * 23.34085 * 16 15 14 18 18 H 1.08999 * 110.03407 * 240.87399 * 17 16 15 19 19 O 1.42899 * 110.07218 * 119.46558 * 17 16 15 20 20 C 1.41291 * 107.16894 * 180.24787 * 3 2 1 21 21 N 1.30452 * 108.02365 * 359.61185 * 20 3 2 22 22 N 1.34258 * 126.29375 * 180.02562 * 2 1 3 23 23 C 1.46509 * 125.75006 * 359.96455 * 22 2 1 24 24 C 1.50696 * 109.47334 * 89.99527 * 23 22 2 25 25 H 1.07999 * 119.99801 * 359.97438 * 24 23 22 26 26 C 1.37877 * 120.00013 * 179.97438 * 24 23 22 27 27 N 1.31510 * 120.00076 * 0.02562 * 26 24 23 28 28 Si 1.86800 * 119.99930 * 179.97438 * 26 24 23 29 29 H 1.48503 * 109.46870 * 90.00152 * 28 26 24 30 30 H 1.48503 * 109.47265 * 209.99901 * 28 26 24 31 31 H 1.48500 * 109.47279 * 330.00361 * 28 26 24 32 32 H 1.09000 * 109.47205 * 90.00428 * 1 2 3 33 33 H 1.09003 * 109.47371 * 210.00273 * 1 2 3 34 34 H 1.09004 * 109.47081 * 330.00734 * 1 2 3 35 35 H 1.09001 * 110.37245 * 37.04849 * 7 6 4 36 36 H 1.09005 * 110.45967 * 274.77485 * 7 6 4 37 37 H 1.08998 * 111.00621 * 278.93562 * 8 7 6 38 38 H 1.09001 * 111.00586 * 155.08100 * 8 7 6 39 39 H 1.09008 * 110.71625 * 206.13396 * 9 8 7 40 40 H 1.09000 * 110.72615 * 82.86267 * 9 8 7 41 41 H 1.09003 * 110.75333 * 274.93846 * 14 12 10 42 42 H 1.08997 * 110.75630 * 38.12007 * 14 12 10 43 43 H 1.09006 * 110.48778 * 80.82936 * 15 14 12 44 44 H 1.09003 * 110.48621 * 203.47142 * 15 14 12 45 45 H 1.09000 * 109.85444 * 264.10274 * 16 15 14 46 46 H 1.08999 * 110.16390 * 142.75175 * 16 15 14 47 47 H 0.96701 * 114.00144 * 62.80494 * 19 17 16 48 48 H 1.08005 * 125.99157 * 179.74122 * 20 3 2 49 49 H 1.09002 * 109.46804 * 209.99690 * 23 22 2 50 50 H 1.09004 * 109.46845 * 329.99395 * 23 22 2 51 51 H 0.97002 * 120.00183 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8858 2.5202 -0.0005 5 8 0.7071 2.7902 0.1277 6 7 2.7917 3.5081 -0.1431 7 6 4.2260 3.3237 -0.4293 8 6 4.6715 4.6501 -1.0940 9 6 3.8400 5.6914 -0.2992 10 6 2.5130 4.9478 -0.0386 11 1 1.7723 5.2394 -0.7832 12 6 1.9985 5.2778 1.3640 13 1 1.0287 4.8106 1.5353 14 6 3.0177 4.8201 2.4369 15 6 2.6776 5.7262 3.6462 16 6 2.3327 7.0904 3.0090 17 6 1.9041 6.8051 1.5590 18 1 2.5741 7.3123 0.8649 19 8 0.5601 7.2431 1.3497 20 6 3.6590 0.6498 -0.0058 21 7 3.6340 -0.6545 -0.0007 22 7 2.3017 -1.0821 -0.0005 23 6 1.8500 -2.4758 -0.0004 24 6 1.6943 -2.9536 -1.4211 25 1 1.9098 -2.2857 -2.2420 26 6 1.2768 -4.2433 -1.6729 27 7 1.0139 -5.0563 -0.6732 28 14 1.0831 -4.8352 -3.4340 29 1 2.3639 -5.4231 -3.9022 30 1 0.0143 -5.8644 -3.4956 31 1 0.7172 -3.6889 -4.3042 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3633 0.8901 0.5137 35 1 4.3719 2.4884 -1.1143 36 1 4.7805 3.1572 0.4943 37 1 4.4081 4.6649 -2.1516 38 1 5.7400 4.8164 -0.9567 39 1 3.6694 6.5865 -0.8975 40 1 4.3324 5.9423 0.6403 41 1 2.8693 3.7697 2.6873 42 1 4.0391 4.9945 2.0987 43 1 1.8181 5.3319 4.1885 44 1 3.5386 5.8176 4.3084 45 1 3.2109 7.7361 3.0186 46 1 1.5157 7.5637 3.5537 47 1 0.4355 8.1959 1.4582 48 1 4.5449 1.2676 -0.0113 49 1 2.5850 -3.0959 0.5130 50 1 0.8917 -2.5471 0.5141 51 1 0.7198 -5.9635 -0.8503 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897892112.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:24:17 Heat of formation + Delta-G solvation = -19.077611 kcal Electronic energy + Delta-G solvation = -31811.165846 eV Core-core repulsion = 27711.491799 eV Total energy + Delta-G solvation = -4099.674047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.98478 -40.20618 -38.36264 -36.93085 -35.08494 -33.89962 -32.30937 -31.59503 -31.10766 -30.65933 -27.92797 -27.38992 -26.66680 -26.45975 -23.89476 -23.32011 -22.08117 -21.13010 -20.92766 -20.20504 -18.86162 -18.35166 -17.34724 -16.87512 -16.66353 -16.45272 -15.75896 -15.53810 -15.17151 -14.65178 -14.56785 -14.50376 -13.98303 -13.73750 -13.47316 -13.39792 -13.19794 -13.01602 -12.73131 -12.56996 -12.48311 -12.34293 -12.17142 -12.06132 -11.74709 -11.49100 -11.43597 -11.29259 -11.19691 -11.10737 -11.06523 -10.90309 -10.86672 -10.62164 -10.41942 -10.35072 -10.12469 -10.07995 -9.91165 -9.28689 -8.69981 -8.58247 -8.44942 -7.85508 -6.32405 -4.40108 2.23375 2.83984 3.08126 3.18999 3.25303 3.29249 3.46253 3.90841 4.02355 4.25269 4.29683 4.36210 4.41279 4.46600 4.74455 4.75731 5.01920 5.08658 5.09816 5.15089 5.20794 5.25199 5.27843 5.28712 5.36510 5.41145 5.51282 5.57816 5.62533 5.64112 5.68243 5.73379 5.77404 5.86834 5.90017 5.93137 5.97785 6.02116 6.12194 6.16128 6.28810 6.44402 6.57325 6.65466 6.84200 6.93275 7.20135 7.48375 7.57841 7.78894 7.80093 7.81917 8.41241 8.64278 8.67771 9.26674 10.75849 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019627 B = 0.002531 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.287599 B =11061.262358 C =11354.874761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.165 3.835 3 C -0.328 4.328 4 C 0.620 3.380 5 O -0.549 6.549 6 N -0.614 5.614 7 C 0.093 3.907 8 C -0.134 4.134 9 C -0.134 4.134 10 C 0.152 3.848 11 H 0.075 0.925 12 C -0.093 4.093 13 H 0.099 0.901 14 C -0.115 4.115 15 C -0.122 4.122 16 C -0.157 4.157 17 C 0.104 3.896 18 H 0.061 0.939 19 O -0.562 6.562 20 C 0.046 3.954 21 N -0.297 5.297 22 N -0.314 5.314 23 C 0.251 3.749 24 C -0.539 4.539 25 H 0.065 0.935 26 C 0.067 3.933 27 N -0.890 5.890 28 Si 0.908 3.092 29 H -0.277 1.277 30 H -0.282 1.282 31 H -0.271 1.271 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.373 0.627 48 H 0.183 0.817 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.453 24.998 4.894 26.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.027 3.973 3 C -0.343 4.343 4 C 0.412 3.588 5 O -0.428 6.428 6 N -0.349 5.349 7 C -0.030 4.030 8 C -0.172 4.172 9 C -0.172 4.172 10 C 0.048 3.952 11 H 0.093 0.907 12 C -0.113 4.113 13 H 0.117 0.883 14 C -0.152 4.152 15 C -0.160 4.160 16 C -0.194 4.194 17 C 0.044 3.956 18 H 0.079 0.921 19 O -0.367 6.367 20 C -0.141 4.141 21 N -0.117 5.117 22 N -0.091 5.091 23 C 0.134 3.866 24 C -0.577 4.577 25 H 0.083 0.917 26 C -0.137 4.137 27 N -0.527 5.527 28 Si 0.735 3.265 29 H -0.203 1.203 30 H -0.208 1.208 31 H -0.196 1.196 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.219 0.781 48 H 0.200 0.800 49 H 0.074 0.926 50 H 0.074 0.926 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.289 22.953 4.918 24.301 hybrid contribution -0.281 0.817 -0.809 1.184 sum 6.008 23.769 4.109 24.859 Atomic orbital electron populations 1.20590 0.86868 1.03940 1.03856 1.21452 0.94913 0.86517 0.94392 1.19610 0.93125 0.92303 1.29267 1.16969 0.83968 0.83167 0.74657 1.90698 1.16525 1.83930 1.51671 1.48145 1.08670 1.05161 1.72878 1.22615 0.81959 0.98554 0.99869 1.22808 1.00110 0.94230 1.00055 1.22834 0.95195 0.98183 1.00981 1.21374 0.96723 0.80776 0.96284 0.90654 1.22292 1.01189 0.93264 0.94542 0.88323 1.22515 0.98607 0.99882 0.94243 1.22325 1.01260 0.94762 0.97629 1.22933 1.01468 0.98321 0.96723 1.22575 0.83233 0.95154 0.94603 0.92115 1.86635 1.28337 1.27979 1.93740 1.24267 0.96853 0.92566 1.00378 1.77143 0.98609 1.12374 1.23622 1.49365 1.02538 1.08259 1.48919 1.19841 0.96382 0.70970 0.99400 1.21245 1.47383 0.98099 0.91016 0.91693 1.24921 0.94457 0.96005 0.98279 1.69912 1.44559 1.07153 1.31113 0.86327 0.78080 0.78637 0.83504 1.20255 1.20781 1.19599 0.89969 0.90873 0.88628 0.89549 0.91334 0.90514 0.89892 0.90356 0.90036 0.91098 0.91047 0.91484 0.91627 0.91551 0.91048 0.78090 0.79995 0.92558 0.92607 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.78 9.64 36.01 0.35 -1.43 16 2 C 0.16 3.45 7.00 -81.60 -0.57 2.88 16 3 C -0.33 -6.22 6.05 -105.07 -0.64 -6.85 16 4 C 0.62 10.87 7.58 -12.52 -0.09 10.77 16 5 O -0.55 -11.01 14.21 5.27 0.07 -10.94 16 6 N -0.61 -8.17 2.62 -164.28 -0.43 -8.61 16 7 C 0.09 0.94 5.10 -2.53 -0.01 0.92 16 8 C -0.13 -0.99 7.09 -24.58 -0.17 -1.17 16 9 C -0.13 -1.01 4.70 -24.90 -0.12 -1.12 16 10 C 0.15 1.73 2.77 -66.96 -0.19 1.54 16 11 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 12 C -0.09 -1.07 2.36 -88.96 -0.21 -1.28 16 13 H 0.10 1.54 7.22 -51.93 -0.38 1.17 16 14 C -0.12 -1.15 5.71 -24.73 -0.14 -1.30 16 15 C -0.12 -1.06 6.85 -24.96 -0.17 -1.23 16 16 C -0.16 -1.18 6.61 -25.51 -0.17 -1.35 16 17 C 0.10 0.93 3.54 -25.61 -0.09 0.84 16 18 H 0.06 0.44 6.34 -51.93 -0.33 0.12 16 19 O -0.56 -5.73 13.22 -35.23 -0.47 -6.19 16 20 C 0.05 0.82 10.28 -16.98 -0.17 0.64 16 21 N -0.30 -6.49 12.50 30.86 0.39 -6.10 16 22 N -0.31 -7.23 3.56 -57.77 -0.21 -7.43 16 23 C 0.25 6.34 5.97 -5.19 -0.03 6.31 16 24 C -0.54 -14.67 9.39 -34.44 -0.32 -14.99 16 25 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 26 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 27 N -0.89 -24.81 13.29 55.43 0.74 -24.07 16 28 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 30 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 31 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.07 1.34 7.05 -51.93 -0.37 0.97 16 34 H 0.10 1.74 6.39 -51.93 -0.33 1.41 16 35 H 0.09 0.94 5.94 -51.93 -0.31 0.63 16 36 H 0.07 0.60 7.72 -51.93 -0.40 0.20 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.50 7.98 -51.92 -0.41 0.08 16 40 H 0.08 0.53 5.76 -51.93 -0.30 0.23 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.61 6.05 -51.93 -0.31 0.29 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.53 7.96 -51.93 -0.41 0.11 16 47 H 0.37 2.02 9.11 45.56 0.42 2.43 16 48 H 0.18 2.45 4.86 -52.48 -0.26 2.20 16 49 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 50 H 0.06 1.40 7.02 -51.93 -0.36 1.04 16 51 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 395.14 15.07 5.95 5.95 Total: -1.00 -32.71 395.14 -8.93 -41.63 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.11 Total: 4.91 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -2.85 Total: -5.11 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.49 Total: -46.22 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.39 Total: -17.13 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.71 -8.93 -41.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897892112.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.557 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds