Wall clock time and date at job start Wed Apr 1 2020 07:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38041 * 126.29083 * 2 1 4 4 C 1.47423 * 126.41747 * 359.97438 * 3 2 1 5 5 O 1.21604 * 120.00260 * 7.02213 * 4 3 2 6 6 N 1.34786 * 120.00256 * 187.01966 * 4 3 2 7 7 C 1.47417 * 125.64531 * 5.93955 * 6 4 3 8 8 C 1.54910 * 104.83304 * 155.88773 * 7 6 4 9 9 C 1.55160 * 101.57820 * 37.00995 * 8 7 6 10 10 C 1.47022 * 125.64856 * 185.95626 * 6 4 3 11 11 H 1.08998 * 110.01082 * 300.53179 * 10 6 4 12 12 C 1.52998 * 109.88111 * 61.62573 * 10 6 4 13 13 H 1.08998 * 110.54314 * 294.07524 * 12 10 6 14 14 C 1.54897 * 110.48709 * 56.68453 * 12 10 6 15 15 C 1.54889 * 102.91549 * 156.52910 * 14 12 10 16 16 C 1.54469 * 104.09922 * 322.30266 * 15 14 12 17 17 C 1.53874 * 106.68751 * 23.34085 * 16 15 14 18 18 H 1.08999 * 110.03407 * 240.87399 * 17 16 15 19 19 O 1.42899 * 110.07218 * 119.46558 * 17 16 15 20 20 C 1.41291 * 107.16894 * 180.24787 * 3 2 1 21 21 N 1.30452 * 108.02365 * 359.61185 * 20 3 2 22 22 N 1.34258 * 126.29375 * 180.02562 * 2 1 3 23 23 C 1.46509 * 125.75006 * 359.96455 * 22 2 1 24 24 C 1.50696 * 109.47334 * 89.99527 * 23 22 2 25 25 H 1.07999 * 119.99801 * 359.97438 * 24 23 22 26 26 C 1.37877 * 120.00013 * 179.97438 * 24 23 22 27 27 N 1.31510 * 120.00076 * 0.02562 * 26 24 23 28 28 Si 1.86800 * 119.99930 * 179.97438 * 26 24 23 29 29 H 1.48503 * 109.46870 * 90.00152 * 28 26 24 30 30 H 1.48503 * 109.47265 * 209.99901 * 28 26 24 31 31 H 1.48500 * 109.47279 * 330.00361 * 28 26 24 32 32 H 1.09000 * 109.47205 * 90.00428 * 1 2 3 33 33 H 1.09003 * 109.47371 * 210.00273 * 1 2 3 34 34 H 1.09004 * 109.47081 * 330.00734 * 1 2 3 35 35 H 1.09001 * 110.37245 * 37.04849 * 7 6 4 36 36 H 1.09005 * 110.45967 * 274.77485 * 7 6 4 37 37 H 1.08998 * 111.00621 * 278.93562 * 8 7 6 38 38 H 1.09001 * 111.00586 * 155.08100 * 8 7 6 39 39 H 1.09008 * 110.71625 * 206.13396 * 9 8 7 40 40 H 1.09000 * 110.72615 * 82.86267 * 9 8 7 41 41 H 1.09003 * 110.75333 * 274.93846 * 14 12 10 42 42 H 1.08997 * 110.75630 * 38.12007 * 14 12 10 43 43 H 1.09006 * 110.48778 * 80.82936 * 15 14 12 44 44 H 1.09003 * 110.48621 * 203.47142 * 15 14 12 45 45 H 1.09000 * 109.85444 * 264.10274 * 16 15 14 46 46 H 1.08999 * 110.16390 * 142.75175 * 16 15 14 47 47 H 0.96701 * 114.00144 * 62.80494 * 19 17 16 48 48 H 1.08005 * 125.99157 * 179.74122 * 20 3 2 49 49 H 1.09002 * 109.46804 * 209.99690 * 23 22 2 50 50 H 1.09004 * 109.46845 * 329.99395 * 23 22 2 51 51 H 0.97002 * 120.00183 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8858 2.5202 -0.0005 5 8 0.7071 2.7902 0.1277 6 7 2.7917 3.5081 -0.1431 7 6 4.2260 3.3237 -0.4293 8 6 4.6715 4.6501 -1.0940 9 6 3.8400 5.6914 -0.2992 10 6 2.5130 4.9478 -0.0386 11 1 1.7723 5.2394 -0.7832 12 6 1.9985 5.2778 1.3640 13 1 1.0287 4.8106 1.5353 14 6 3.0177 4.8201 2.4369 15 6 2.6776 5.7262 3.6462 16 6 2.3327 7.0904 3.0090 17 6 1.9041 6.8051 1.5590 18 1 2.5741 7.3123 0.8649 19 8 0.5601 7.2431 1.3497 20 6 3.6590 0.6498 -0.0058 21 7 3.6340 -0.6545 -0.0007 22 7 2.3017 -1.0821 -0.0005 23 6 1.8500 -2.4758 -0.0004 24 6 1.6943 -2.9536 -1.4211 25 1 1.9098 -2.2857 -2.2420 26 6 1.2768 -4.2433 -1.6729 27 7 1.0139 -5.0563 -0.6732 28 14 1.0831 -4.8352 -3.4340 29 1 2.3639 -5.4231 -3.9022 30 1 0.0143 -5.8644 -3.4956 31 1 0.7172 -3.6889 -4.3042 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3633 0.8901 0.5137 35 1 4.3719 2.4884 -1.1143 36 1 4.7805 3.1572 0.4943 37 1 4.4081 4.6649 -2.1516 38 1 5.7400 4.8164 -0.9567 39 1 3.6694 6.5865 -0.8975 40 1 4.3324 5.9423 0.6403 41 1 2.8693 3.7697 2.6873 42 1 4.0391 4.9945 2.0987 43 1 1.8181 5.3319 4.1885 44 1 3.5386 5.8176 4.3084 45 1 3.2109 7.7361 3.0186 46 1 1.5157 7.5637 3.5537 47 1 0.4355 8.1959 1.4582 48 1 4.5449 1.2676 -0.0113 49 1 2.5850 -3.0959 0.5130 50 1 0.8917 -2.5471 0.5141 51 1 0.7198 -5.9635 -0.8503 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897892112.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:24:15 Heat of formation + Delta-G solvation = -41.120661 kcal Electronic energy + Delta-G solvation = -31812.121705 eV Core-core repulsion = 27711.491799 eV Total energy + Delta-G solvation = -4100.629906 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.43851 -41.28431 -39.40933 -37.99554 -35.93164 -35.75646 -34.00189 -32.95517 -32.35650 -31.65074 -29.15689 -28.64280 -28.22478 -27.33160 -25.51578 -24.73251 -22.85474 -22.36378 -21.85462 -21.36425 -20.02845 -19.63580 -18.88568 -18.24326 -17.90028 -17.38000 -16.96475 -16.61446 -16.41829 -16.41084 -16.04776 -15.47774 -15.09386 -14.98128 -14.73403 -14.34976 -14.29333 -14.17192 -14.11683 -13.82401 -13.68298 -13.54592 -13.45556 -13.31730 -13.11446 -13.00732 -12.86717 -12.71826 -12.33516 -12.16181 -12.01735 -11.95494 -11.91248 -11.83489 -11.74181 -11.63322 -11.33698 -11.14436 -10.78137 -10.76386 -10.70573 -10.28418 -9.72032 -9.34863 -8.39683 -6.56314 0.64841 1.30493 1.36094 1.36995 1.47330 1.63054 2.11421 2.30999 2.49801 2.92368 3.33139 3.52263 3.60475 3.65884 3.70387 3.76722 3.84910 4.08105 4.11331 4.14197 4.21457 4.34274 4.35484 4.40393 4.48104 4.55053 4.56040 4.57427 4.63511 4.73883 4.76342 4.81472 4.86235 4.95724 4.99619 5.01926 5.04310 5.08873 5.11261 5.17114 5.19631 5.23448 5.34094 5.41366 5.44749 5.47134 5.57750 5.69950 5.72593 6.01575 6.52425 6.59987 6.80314 7.00113 7.14757 7.32154 8.68411 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019627 B = 0.002531 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.287599 B =11061.262358 C =11354.874761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.143 3.857 3 C -0.327 4.327 4 C 0.614 3.386 5 O -0.585 6.585 6 N -0.608 5.608 7 C 0.078 3.922 8 C -0.123 4.123 9 C -0.122 4.122 10 C 0.146 3.854 11 H 0.049 0.951 12 C -0.096 4.096 13 H 0.043 0.957 14 C -0.110 4.110 15 C -0.124 4.124 16 C -0.149 4.149 17 C 0.105 3.895 18 H 0.088 0.912 19 O -0.591 6.591 20 C 0.069 3.931 21 N -0.333 5.333 22 N -0.336 5.336 23 C 0.267 3.733 24 C -0.556 4.556 25 H 0.051 0.949 26 C 0.024 3.976 27 N -0.917 5.917 28 Si 0.972 3.028 29 H -0.271 1.271 30 H -0.271 1.271 31 H -0.270 1.270 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.040 0.960 42 H 0.098 0.902 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.070 0.930 47 H 0.392 0.608 48 H 0.229 0.771 49 H 0.033 0.967 50 H 0.048 0.952 51 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.147 27.958 4.169 29.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.007 3.993 3 C -0.342 4.342 4 C 0.406 3.594 5 O -0.467 6.467 6 N -0.340 5.340 7 C -0.044 4.044 8 C -0.160 4.160 9 C -0.160 4.160 10 C 0.043 3.957 11 H 0.067 0.933 12 C -0.116 4.116 13 H 0.062 0.938 14 C -0.147 4.147 15 C -0.161 4.161 16 C -0.187 4.187 17 C 0.047 3.953 18 H 0.106 0.894 19 O -0.400 6.400 20 C -0.117 4.117 21 N -0.153 5.153 22 N -0.113 5.113 23 C 0.149 3.851 24 C -0.594 4.594 25 H 0.070 0.930 26 C -0.178 4.178 27 N -0.555 5.555 28 Si 0.796 3.204 29 H -0.196 1.196 30 H -0.196 1.196 31 H -0.195 1.195 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.059 0.941 42 H 0.117 0.883 43 H 0.063 0.937 44 H 0.104 0.896 45 H 0.115 0.885 46 H 0.089 0.911 47 H 0.242 0.758 48 H 0.245 0.755 49 H 0.051 0.949 50 H 0.066 0.934 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.017 25.965 4.200 27.805 hybrid contribution -1.120 0.020 -0.546 1.246 sum 7.897 25.985 3.654 27.403 Atomic orbital electron populations 1.20539 0.86134 1.03970 1.03803 1.21900 0.95810 0.86808 0.94807 1.19910 0.93438 0.92824 1.28010 1.16850 0.84149 0.83410 0.75037 1.90676 1.18193 1.84377 1.53467 1.48164 1.09661 1.05424 1.70720 1.22962 0.79918 1.00392 1.01137 1.22814 1.01942 0.91858 0.99433 1.22857 0.92393 0.98277 1.02431 1.21577 0.98774 0.79793 0.95554 0.93271 1.22217 0.98950 0.95300 0.95123 0.93793 1.22484 0.99454 0.98350 0.94420 1.22344 1.01241 0.95209 0.97321 1.22906 1.02678 0.97788 0.95312 1.22636 0.83259 0.93153 0.96293 0.89398 1.86592 1.29370 1.30048 1.93957 1.24979 0.97847 0.91526 0.97308 1.77095 0.98210 1.14329 1.25657 1.49116 1.03407 1.07680 1.51141 1.19373 0.95229 0.72287 0.98230 1.21379 1.48043 0.98487 0.91463 0.93040 1.25742 0.93755 0.95899 1.02376 1.69995 1.44801 1.07600 1.33089 0.85336 0.78431 0.78189 0.78447 1.19595 1.19562 1.19503 0.90010 0.90935 0.88335 0.90292 0.89134 0.90874 0.86449 0.88280 0.87920 0.94124 0.88339 0.93688 0.89588 0.88535 0.91093 0.75782 0.75494 0.94933 0.93381 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.46 9.64 71.24 0.69 -2.77 16 2 C 0.14 6.25 7.00 42.14 0.30 6.55 16 3 C -0.33 -12.64 6.05 -20.15 -0.12 -12.76 16 4 C 0.61 22.10 7.58 86.66 0.66 22.76 16 5 O -0.59 -24.82 14.21 -4.04 -0.06 -24.88 16 6 N -0.61 -15.68 2.62 -791.91 -2.08 -17.76 16 7 C 0.08 1.32 5.10 86.86 0.44 1.76 16 8 C -0.12 -1.25 7.09 31.99 0.23 -1.03 16 9 C -0.12 -1.30 4.70 31.78 0.15 -1.15 16 10 C 0.15 3.14 2.77 45.34 0.13 3.26 16 11 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 12 C -0.10 -2.18 2.36 -9.72 -0.02 -2.20 16 13 H 0.04 1.48 7.22 -2.39 -0.02 1.46 16 14 C -0.11 -2.04 5.71 31.89 0.18 -1.86 16 15 C -0.12 -1.94 6.85 31.74 0.22 -1.72 16 16 C -0.15 -1.81 6.61 31.39 0.21 -1.61 16 17 C 0.11 1.67 3.54 31.32 0.11 1.78 16 18 H 0.09 0.92 6.34 -2.39 -0.02 0.90 16 19 O -0.59 -11.62 13.22 -148.98 -1.97 -13.59 16 20 C 0.07 2.44 10.28 85.65 0.88 3.33 16 21 N -0.33 -14.76 12.50 -56.27 -0.70 -15.47 16 22 N -0.34 -16.15 3.56 -336.68 -1.20 -17.35 16 23 C 0.27 14.20 5.97 85.63 0.51 14.71 16 24 C -0.56 -31.24 9.39 25.60 0.24 -31.00 16 25 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 26 C 0.02 1.30 5.46 84.66 0.46 1.76 16 27 N -0.92 -52.07 13.29 21.45 0.28 -51.78 16 28 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 29 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 30 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 31 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 32 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.07 2.84 7.05 -2.39 -0.02 2.83 16 34 H 0.10 3.85 6.39 -2.38 -0.02 3.83 16 35 H 0.08 1.49 5.94 -2.39 -0.01 1.48 16 36 H 0.09 1.20 7.72 -2.38 -0.02 1.18 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.10 0.74 7.98 -2.38 -0.02 0.73 16 40 H 0.10 0.72 5.76 -2.39 -0.01 0.71 16 41 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.10 1.27 6.05 -2.39 -0.01 1.26 16 43 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.07 0.89 7.96 -2.39 -0.02 0.87 16 47 H 0.39 3.65 9.11 -74.06 -0.67 2.97 16 48 H 0.23 5.54 4.86 -2.91 -0.01 5.52 16 49 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.05 2.57 7.02 -2.38 -0.02 2.56 16 51 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -76.44 395.14 1.84 -74.60 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.28 Total: 21.15 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 5.25 Total: -0.19 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -3.70 Total: -102.36 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -2.03 Total: -38.47 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -76.44 1.84 -74.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897892112.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.477 kcal (2) G-P(sol) polarization free energy of solvation -76.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds