Wall clock time and date at job start Wed Apr 1 2020 07:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38051 * 126.29099 * 2 1 4 4 C 1.47422 * 126.41275 * 359.74441 * 3 2 1 5 5 O 1.21598 * 120.00227 * 6.58610 * 4 3 2 6 6 N 1.34783 * 119.99673 * 186.59403 * 4 3 2 7 7 C 1.47422 * 125.64885 * 5.58356 * 6 4 3 8 8 C 1.55127 * 104.71858 * 155.82207 * 7 6 4 9 9 C 1.55150 * 101.48606 * 37.30025 * 8 7 6 10 10 C 1.47023 * 125.64571 * 185.90346 * 6 4 3 11 11 H 1.09001 * 109.88094 * 300.43541 * 10 6 4 12 12 C 1.52999 * 109.88566 * 61.44717 * 10 6 4 13 13 H 1.09001 * 110.43131 * 302.49041 * 12 10 6 14 14 C 1.54880 * 110.48814 * 65.17731 * 12 10 6 15 15 C 1.54885 * 102.74891 * 156.62313 * 14 12 10 16 16 C 1.54262 * 104.19512 * 322.05416 * 15 14 12 17 17 C 1.53872 * 106.59770 * 23.61223 * 16 15 14 18 18 H 1.09004 * 110.03211 * 119.28449 * 17 16 15 19 19 O 1.42900 * 110.07391 * 240.68904 * 17 16 15 20 20 C 1.41294 * 107.16621 * 179.73867 * 3 2 1 21 21 N 1.30439 * 108.02516 * 0.02562 * 20 3 2 22 22 N 1.34262 * 126.29113 * 179.69241 * 2 1 3 23 23 C 1.46494 * 125.75331 * 0.26532 * 22 2 1 24 24 C 1.50704 * 109.47367 * 89.99793 * 23 22 2 25 25 H 1.07993 * 119.99866 * 359.97438 * 24 23 22 26 26 C 1.37878 * 119.99846 * 179.97438 * 24 23 22 27 27 N 1.31517 * 120.00281 * 0.02562 * 26 24 23 28 28 Si 1.86795 * 119.99830 * 179.97438 * 26 24 23 29 29 H 1.48501 * 109.47109 * 90.00426 * 28 26 24 30 30 H 1.48498 * 109.47494 * 210.00284 * 28 26 24 31 31 H 1.48501 * 109.47309 * 330.00177 * 28 26 24 32 32 H 1.08996 * 109.46926 * 89.99785 * 1 2 3 33 33 H 1.09000 * 109.46911 * 209.99506 * 1 2 3 34 34 H 1.09003 * 109.46859 * 329.99514 * 1 2 3 35 35 H 1.08992 * 110.37009 * 274.75172 * 7 6 4 36 36 H 1.09000 * 110.36240 * 37.07910 * 7 6 4 37 37 H 1.09003 * 111.19426 * 279.19149 * 8 7 6 38 38 H 1.09005 * 110.90413 * 155.28023 * 8 7 6 39 39 H 1.09008 * 110.71994 * 205.96802 * 9 8 7 40 40 H 1.09001 * 110.87525 * 82.76795 * 9 8 7 41 41 H 1.09008 * 110.75713 * 274.93302 * 14 12 10 42 42 H 1.09002 * 110.75916 * 38.30618 * 14 12 10 43 43 H 1.09007 * 110.48410 * 203.37839 * 15 14 12 44 44 H 1.09002 * 110.48895 * 80.73884 * 15 14 12 45 45 H 1.08998 * 110.03549 * 264.32362 * 16 15 14 46 46 H 1.09005 * 110.07315 * 142.92158 * 16 15 14 47 47 H 0.96695 * 114.00028 * 297.19050 * 19 17 16 48 48 H 1.08004 * 125.98307 * 180.02562 * 20 3 2 49 49 H 1.09000 * 109.46841 * 210.00055 * 23 22 2 50 50 H 1.09001 * 109.47240 * 329.99447 * 23 22 2 51 51 H 0.96995 * 120.00115 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0053 5 8 0.7058 2.7901 0.1105 6 7 2.7931 3.5081 -0.1387 7 6 4.2317 3.3234 -0.4027 8 6 4.6835 4.6496 -1.0687 9 6 3.8429 5.6913 -0.2844 10 6 2.5131 4.9479 -0.0384 11 1 1.7817 5.2367 -0.7932 12 6 1.9789 5.2782 1.3567 13 1 1.0832 4.6946 1.5693 14 6 3.0659 5.0184 2.4290 15 6 2.6188 5.9317 3.5972 16 6 2.0883 7.2026 2.9022 17 6 1.6814 6.7871 1.4776 18 1 0.6180 6.9715 1.3242 19 8 2.4477 7.5157 0.5164 20 6 3.6591 0.6498 0.0062 21 7 3.6340 -0.6543 0.0090 22 7 2.3017 -1.0822 0.0058 23 6 1.8501 -2.4758 0.0078 24 6 1.7005 -2.9574 -1.4123 25 1 1.9194 -2.2919 -2.2341 26 6 1.2840 -4.2478 -1.6624 27 7 1.0169 -5.0582 -0.6616 28 14 1.0979 -4.8446 -3.4226 29 1 2.3806 -5.4337 -3.8838 30 1 0.0294 -5.8739 -3.4860 31 1 0.7357 -3.7006 -4.2975 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5139 35 1 4.7710 3.1619 0.5305 36 1 4.3881 2.4856 -1.0822 37 1 4.4324 4.6635 -2.1293 38 1 5.7504 4.8161 -0.9193 39 1 3.6790 6.5860 -0.8853 40 1 4.3230 5.9458 0.6605 41 1 3.0648 3.9720 2.7346 42 1 4.0489 5.3137 2.0621 43 1 3.4666 6.1733 4.2385 44 1 1.8272 5.4535 4.1740 45 1 2.8709 7.9601 2.8610 46 1 1.2226 7.5895 3.4399 47 1 2.3045 8.4717 0.5422 48 1 4.5449 1.2676 0.0081 49 1 2.5828 -3.0944 0.5260 50 1 0.8896 -2.5457 0.5183 51 1 0.7235 -5.9658 -0.8375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897892113.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:24:21 Heat of formation + Delta-G solvation = -12.468604 kcal Electronic energy + Delta-G solvation = -31916.862975 eV Core-core repulsion = 27817.475516 eV Total energy + Delta-G solvation = -4099.387459 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 3.50 seconds Orbital eigenvalues (eV) -40.94478 -40.19043 -38.37872 -36.77617 -35.01441 -33.89216 -32.26591 -31.52119 -31.02102 -30.59880 -27.93371 -27.36242 -26.67197 -26.50493 -23.80015 -23.29764 -21.81305 -21.07622 -20.83661 -20.25774 -18.87037 -18.33959 -17.51204 -16.84512 -16.53326 -16.40660 -15.59884 -15.27589 -15.11967 -14.64734 -14.58058 -14.32571 -14.23433 -13.87931 -13.64401 -13.37758 -13.15113 -12.79778 -12.69475 -12.52739 -12.34722 -12.20621 -12.03394 -11.94201 -11.70613 -11.43498 -11.33338 -11.29262 -11.18633 -11.10009 -10.88757 -10.82507 -10.77335 -10.54053 -10.34960 -10.22673 -10.10850 -10.08237 -9.90322 -9.26530 -8.69554 -8.55936 -8.39698 -7.83033 -6.32018 -4.39658 2.24935 2.85972 3.16236 3.19326 3.25593 3.30149 3.49315 3.94795 4.01059 4.25702 4.34983 4.38072 4.55507 4.63246 4.79928 4.98576 5.02697 5.12040 5.18105 5.20006 5.23458 5.32042 5.33713 5.41388 5.47149 5.48480 5.56326 5.64614 5.69141 5.77749 5.77892 5.79814 5.92600 5.93171 5.97957 5.99673 6.07763 6.15828 6.18150 6.24012 6.36993 6.46109 6.58746 6.72707 6.85646 6.93946 7.21890 7.42562 7.58533 7.79442 7.82702 7.86496 8.42831 8.65270 8.69859 9.27093 10.76224 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021123 B = 0.002511 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.252049 B =11149.915464 C =11454.514862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.163 3.837 3 C -0.328 4.328 4 C 0.619 3.381 5 O -0.556 6.556 6 N -0.616 5.616 7 C 0.094 3.906 8 C -0.142 4.142 9 C -0.108 4.108 10 C 0.162 3.838 11 H 0.070 0.930 12 C -0.095 4.095 13 H 0.096 0.904 14 C -0.119 4.119 15 C -0.123 4.123 16 C -0.154 4.154 17 C 0.105 3.895 18 H 0.056 0.944 19 O -0.554 6.554 20 C 0.046 3.954 21 N -0.298 5.298 22 N -0.314 5.314 23 C 0.251 3.749 24 C -0.539 4.539 25 H 0.065 0.935 26 C 0.067 3.933 27 N -0.890 5.890 28 Si 0.908 3.092 29 H -0.277 1.277 30 H -0.282 1.282 31 H -0.271 1.271 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.367 0.633 48 H 0.184 0.816 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.650 25.249 5.309 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.026 3.974 3 C -0.343 4.343 4 C 0.412 3.588 5 O -0.436 6.436 6 N -0.350 5.350 7 C -0.029 4.029 8 C -0.180 4.180 9 C -0.145 4.145 10 C 0.059 3.941 11 H 0.088 0.912 12 C -0.114 4.114 13 H 0.114 0.886 14 C -0.157 4.157 15 C -0.161 4.161 16 C -0.192 4.192 17 C 0.046 3.954 18 H 0.074 0.926 19 O -0.359 6.359 20 C -0.140 4.140 21 N -0.118 5.118 22 N -0.091 5.091 23 C 0.134 3.866 24 C -0.577 4.577 25 H 0.083 0.917 26 C -0.137 4.137 27 N -0.528 5.528 28 Si 0.735 3.265 29 H -0.202 1.202 30 H -0.208 1.208 31 H -0.196 1.196 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.214 0.786 48 H 0.201 0.799 49 H 0.074 0.926 50 H 0.074 0.926 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.785 23.248 5.288 24.317 hybrid contribution -0.692 0.715 -0.702 1.218 sum 4.092 23.963 4.586 24.739 Atomic orbital electron populations 1.20577 0.86906 1.03852 1.03821 1.21450 0.94889 0.86535 0.94505 1.19640 0.93115 0.92404 1.29155 1.16958 0.83995 0.83216 0.74596 1.90662 1.16553 1.84079 1.52314 1.48257 1.08369 1.05619 1.72768 1.22641 0.81822 0.98679 0.99807 1.22957 1.00174 0.94781 1.00129 1.22720 0.93551 0.97213 1.01058 1.21186 0.97640 0.79718 0.95571 0.91182 1.22411 1.00043 0.93321 0.95666 0.88608 1.22653 0.98824 0.99648 0.94538 1.22297 1.00546 0.95532 0.97703 1.22898 1.01098 0.98696 0.96533 1.22402 0.93910 0.91986 0.87116 0.92610 1.86766 1.68368 1.22292 1.58519 1.24292 0.96917 0.92547 1.00285 1.77141 0.98578 1.12395 1.23668 1.49361 1.02560 1.08239 1.48961 1.19833 0.96365 0.71004 0.99393 1.21250 1.47342 0.98086 0.91037 0.91692 1.24923 0.94460 0.96018 0.98273 1.69913 1.44562 1.07215 1.31074 0.86326 0.78076 0.78637 0.83505 1.20250 1.20792 1.19601 0.90003 0.90911 0.88695 0.91513 0.89801 0.90869 0.90291 0.89317 0.90136 0.91516 0.90481 0.91719 0.91661 0.90963 0.91686 0.78551 0.79949 0.92567 0.92622 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.75 9.64 36.01 0.35 -1.40 16 2 C 0.16 3.44 7.00 -81.60 -0.57 2.87 16 3 C -0.33 -6.29 6.05 -105.07 -0.64 -6.93 16 4 C 0.62 10.95 7.57 -12.52 -0.09 10.85 16 5 O -0.56 -10.94 14.07 5.28 0.07 -10.87 16 6 N -0.62 -8.53 2.85 -164.14 -0.47 -9.00 16 7 C 0.09 1.03 5.11 -2.41 -0.01 1.02 16 8 C -0.14 -1.25 7.10 -24.47 -0.17 -1.43 16 9 C -0.11 -0.99 4.38 -24.90 -0.11 -1.10 16 10 C 0.16 1.93 2.41 -66.95 -0.16 1.77 16 11 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 12 C -0.10 -1.06 2.66 -88.97 -0.24 -1.29 16 13 H 0.10 1.34 7.04 -51.93 -0.37 0.97 16 14 C -0.12 -1.20 5.94 -24.75 -0.15 -1.34 16 15 C -0.12 -1.03 6.83 -25.08 -0.17 -1.20 16 16 C -0.15 -1.10 6.61 -25.62 -0.17 -1.27 16 17 C 0.11 0.89 4.11 -25.62 -0.11 0.78 16 18 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 19 O -0.55 -3.98 8.97 -35.23 -0.32 -4.30 16 20 C 0.05 0.84 10.28 -16.98 -0.17 0.66 16 21 N -0.30 -6.57 12.50 30.86 0.39 -6.19 16 22 N -0.31 -7.28 3.56 -57.77 -0.21 -7.49 16 23 C 0.25 6.36 5.97 -5.20 -0.03 6.33 16 24 C -0.54 -14.71 9.39 -34.44 -0.32 -15.03 16 25 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 26 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 27 N -0.89 -24.85 13.29 55.43 0.74 -24.11 16 28 Si 0.91 21.02 29.54 -169.99 -5.02 16.00 16 29 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 30 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 31 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 32 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.07 1.32 7.04 -51.93 -0.37 0.96 16 34 H 0.09 1.70 6.40 -51.93 -0.33 1.37 16 35 H 0.07 0.66 7.74 -51.93 -0.40 0.26 16 36 H 0.08 0.98 5.90 -51.93 -0.31 0.68 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.80 6.82 -51.92 -0.35 0.44 16 40 H 0.08 0.71 5.21 -51.93 -0.27 0.44 16 41 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 42 H 0.08 0.72 5.46 -51.93 -0.28 0.44 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.45 7.96 -51.93 -0.41 0.04 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.37 1.26 9.11 45.56 0.42 1.67 16 48 H 0.18 2.57 4.85 -52.48 -0.25 2.31 16 49 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 50 H 0.06 1.40 7.01 -51.93 -0.36 1.04 16 51 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 390.69 15.07 5.89 5.89 Total: -1.00 -31.54 390.69 -8.86 -40.40 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -7.07 Total: 4.65 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -2.87 Total: -4.99 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.45 Total: -46.78 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.24 Total: -15.17 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.54 -8.86 -40.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897892113.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.932 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.50 seconds