Wall clock time and date at job start Wed Apr 1 2020 07:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38051 * 126.29099 * 2 1 4 4 C 1.47422 * 126.41275 * 359.74441 * 3 2 1 5 5 O 1.21598 * 120.00227 * 6.58610 * 4 3 2 6 6 N 1.34783 * 119.99673 * 186.59403 * 4 3 2 7 7 C 1.47422 * 125.64885 * 5.58356 * 6 4 3 8 8 C 1.55127 * 104.71858 * 155.82207 * 7 6 4 9 9 C 1.55150 * 101.48606 * 37.30025 * 8 7 6 10 10 C 1.47023 * 125.64571 * 185.90346 * 6 4 3 11 11 H 1.09001 * 109.88094 * 300.43541 * 10 6 4 12 12 C 1.52999 * 109.88566 * 61.44717 * 10 6 4 13 13 H 1.09001 * 110.43131 * 302.49041 * 12 10 6 14 14 C 1.54880 * 110.48814 * 65.17731 * 12 10 6 15 15 C 1.54885 * 102.74891 * 156.62313 * 14 12 10 16 16 C 1.54262 * 104.19512 * 322.05416 * 15 14 12 17 17 C 1.53872 * 106.59770 * 23.61223 * 16 15 14 18 18 H 1.09004 * 110.03211 * 119.28449 * 17 16 15 19 19 O 1.42900 * 110.07391 * 240.68904 * 17 16 15 20 20 C 1.41294 * 107.16621 * 179.73867 * 3 2 1 21 21 N 1.30439 * 108.02516 * 0.02562 * 20 3 2 22 22 N 1.34262 * 126.29113 * 179.69241 * 2 1 3 23 23 C 1.46494 * 125.75331 * 0.26532 * 22 2 1 24 24 C 1.50704 * 109.47367 * 89.99793 * 23 22 2 25 25 H 1.07993 * 119.99866 * 359.97438 * 24 23 22 26 26 C 1.37878 * 119.99846 * 179.97438 * 24 23 22 27 27 N 1.31517 * 120.00281 * 0.02562 * 26 24 23 28 28 Si 1.86795 * 119.99830 * 179.97438 * 26 24 23 29 29 H 1.48501 * 109.47109 * 90.00426 * 28 26 24 30 30 H 1.48498 * 109.47494 * 210.00284 * 28 26 24 31 31 H 1.48501 * 109.47309 * 330.00177 * 28 26 24 32 32 H 1.08996 * 109.46926 * 89.99785 * 1 2 3 33 33 H 1.09000 * 109.46911 * 209.99506 * 1 2 3 34 34 H 1.09003 * 109.46859 * 329.99514 * 1 2 3 35 35 H 1.08992 * 110.37009 * 274.75172 * 7 6 4 36 36 H 1.09000 * 110.36240 * 37.07910 * 7 6 4 37 37 H 1.09003 * 111.19426 * 279.19149 * 8 7 6 38 38 H 1.09005 * 110.90413 * 155.28023 * 8 7 6 39 39 H 1.09008 * 110.71994 * 205.96802 * 9 8 7 40 40 H 1.09001 * 110.87525 * 82.76795 * 9 8 7 41 41 H 1.09008 * 110.75713 * 274.93302 * 14 12 10 42 42 H 1.09002 * 110.75916 * 38.30618 * 14 12 10 43 43 H 1.09007 * 110.48410 * 203.37839 * 15 14 12 44 44 H 1.09002 * 110.48895 * 80.73884 * 15 14 12 45 45 H 1.08998 * 110.03549 * 264.32362 * 16 15 14 46 46 H 1.09005 * 110.07315 * 142.92158 * 16 15 14 47 47 H 0.96695 * 114.00028 * 297.19050 * 19 17 16 48 48 H 1.08004 * 125.98307 * 180.02562 * 20 3 2 49 49 H 1.09000 * 109.46841 * 210.00055 * 23 22 2 50 50 H 1.09001 * 109.47240 * 329.99447 * 23 22 2 51 51 H 0.96995 * 120.00115 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0053 5 8 0.7058 2.7901 0.1105 6 7 2.7931 3.5081 -0.1387 7 6 4.2317 3.3234 -0.4027 8 6 4.6835 4.6496 -1.0687 9 6 3.8429 5.6913 -0.2844 10 6 2.5131 4.9479 -0.0384 11 1 1.7817 5.2367 -0.7932 12 6 1.9789 5.2782 1.3567 13 1 1.0832 4.6946 1.5693 14 6 3.0659 5.0184 2.4290 15 6 2.6188 5.9317 3.5972 16 6 2.0883 7.2026 2.9022 17 6 1.6814 6.7871 1.4776 18 1 0.6180 6.9715 1.3242 19 8 2.4477 7.5157 0.5164 20 6 3.6591 0.6498 0.0062 21 7 3.6340 -0.6543 0.0090 22 7 2.3017 -1.0822 0.0058 23 6 1.8501 -2.4758 0.0078 24 6 1.7005 -2.9574 -1.4123 25 1 1.9194 -2.2919 -2.2341 26 6 1.2840 -4.2478 -1.6624 27 7 1.0169 -5.0582 -0.6616 28 14 1.0979 -4.8446 -3.4226 29 1 2.3806 -5.4337 -3.8838 30 1 0.0294 -5.8739 -3.4860 31 1 0.7357 -3.7006 -4.2975 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5139 35 1 4.7710 3.1619 0.5305 36 1 4.3881 2.4856 -1.0822 37 1 4.4324 4.6635 -2.1293 38 1 5.7504 4.8161 -0.9193 39 1 3.6790 6.5860 -0.8853 40 1 4.3230 5.9458 0.6605 41 1 3.0648 3.9720 2.7346 42 1 4.0489 5.3137 2.0621 43 1 3.4666 6.1733 4.2385 44 1 1.8272 5.4535 4.1740 45 1 2.8709 7.9601 2.8610 46 1 1.2226 7.5895 3.4399 47 1 2.3045 8.4717 0.5422 48 1 4.5449 1.2676 0.0081 49 1 2.5828 -3.0944 0.5260 50 1 0.8896 -2.5457 0.5183 51 1 0.7235 -5.9658 -0.8375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897892113.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:24:19 Heat of formation + Delta-G solvation = -32.438996 kcal Electronic energy + Delta-G solvation = -31917.728956 eV Core-core repulsion = 27817.475516 eV Total energy + Delta-G solvation = -4100.253440 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -42.42614 -41.26590 -39.42996 -37.86080 -35.85362 -35.62416 -33.99441 -32.92779 -32.29332 -31.60751 -29.14712 -28.59804 -28.20635 -27.45375 -25.48972 -24.69654 -22.64664 -22.35924 -21.80266 -21.31239 -20.08585 -19.62668 -18.88140 -18.32506 -17.85051 -17.37717 -16.92811 -16.50765 -16.40153 -16.11687 -16.03576 -15.28797 -15.12286 -14.93545 -14.86263 -14.64692 -14.31916 -14.25027 -14.09574 -13.71088 -13.67299 -13.62280 -13.30151 -13.11680 -13.09006 -12.96320 -12.71822 -12.61539 -12.32836 -12.13457 -12.01750 -11.88969 -11.85870 -11.73900 -11.66578 -11.59940 -11.23124 -10.98281 -10.77855 -10.71972 -10.68609 -10.27847 -9.70337 -9.32619 -8.39439 -6.56004 0.65946 1.30647 1.36175 1.37179 1.47487 1.64295 2.15448 2.31250 2.50948 2.92577 3.41319 3.56444 3.62909 3.65630 3.71503 3.84530 3.89094 4.07096 4.14810 4.23419 4.25234 4.36599 4.41751 4.44163 4.47824 4.54962 4.57408 4.63060 4.71982 4.75157 4.78868 4.84955 4.87162 5.03006 5.03750 5.07376 5.09754 5.12484 5.14586 5.20337 5.22835 5.36045 5.39648 5.43863 5.47468 5.57883 5.63957 5.72934 5.76323 6.02719 6.52821 6.62607 6.80683 7.05027 7.15041 7.32996 8.68619 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021123 B = 0.002511 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.252049 B =11149.915464 C =11454.514862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.144 3.856 3 C -0.327 4.327 4 C 0.615 3.385 5 O -0.585 6.585 6 N -0.610 5.610 7 C 0.081 3.919 8 C -0.132 4.132 9 C -0.094 4.094 10 C 0.158 3.842 11 H 0.047 0.953 12 C -0.099 4.099 13 H 0.058 0.942 14 C -0.115 4.115 15 C -0.124 4.124 16 C -0.145 4.145 17 C 0.113 3.887 18 H 0.050 0.950 19 O -0.559 6.559 20 C 0.068 3.932 21 N -0.334 5.334 22 N -0.337 5.337 23 C 0.267 3.733 24 C -0.556 4.556 25 H 0.051 0.949 26 C 0.024 3.976 27 N -0.917 5.917 28 Si 0.972 3.028 29 H -0.271 1.271 30 H -0.270 1.270 31 H -0.270 1.270 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.043 0.957 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.090 0.910 46 H 0.072 0.928 47 H 0.387 0.613 48 H 0.226 0.774 49 H 0.032 0.968 50 H 0.050 0.950 51 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.415 27.904 4.765 29.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.008 3.992 3 C -0.343 4.343 4 C 0.406 3.594 5 O -0.467 6.467 6 N -0.342 5.342 7 C -0.041 4.041 8 C -0.170 4.170 9 C -0.131 4.131 10 C 0.056 3.944 11 H 0.065 0.935 12 C -0.118 4.118 13 H 0.076 0.924 14 C -0.152 4.152 15 C -0.161 4.161 16 C -0.183 4.183 17 C 0.054 3.946 18 H 0.068 0.932 19 O -0.367 6.367 20 C -0.119 4.119 21 N -0.154 5.154 22 N -0.114 5.114 23 C 0.149 3.851 24 C -0.594 4.594 25 H 0.069 0.931 26 C -0.177 4.177 27 N -0.555 5.555 28 Si 0.796 3.204 29 H -0.197 1.197 30 H -0.195 1.195 31 H -0.195 1.195 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.062 0.938 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.073 0.927 45 H 0.109 0.891 46 H 0.091 0.909 47 H 0.238 0.762 48 H 0.242 0.758 49 H 0.050 0.950 50 H 0.068 0.932 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.578 25.956 4.748 27.194 hybrid contribution -1.212 0.027 -0.513 1.316 sum 5.366 25.983 4.235 26.867 Atomic orbital electron populations 1.20546 0.85934 1.04059 1.03837 1.21925 0.95882 0.86697 0.94722 1.19938 0.93341 0.92986 1.27989 1.16815 0.84202 0.83311 0.75051 1.90640 1.17855 1.84400 1.53788 1.48293 1.09220 1.05894 1.70815 1.22932 0.80096 1.00139 1.00938 1.22960 1.01773 0.92735 0.99568 1.22655 0.91610 0.97056 1.01773 1.21361 0.98984 0.78631 0.95471 0.93492 1.22316 0.98907 0.95103 0.95521 0.92368 1.22609 0.99026 0.98722 0.94837 1.22309 1.00827 0.95715 0.97276 1.22842 1.01944 0.98324 0.95204 1.22183 0.93833 0.90299 0.88325 0.93177 1.86688 1.67957 1.23988 1.58110 1.24964 0.97942 0.91555 0.97393 1.77093 0.98301 1.14294 1.25692 1.49123 1.03386 1.07719 1.51150 1.19374 0.95260 0.72279 0.98213 1.21380 1.48031 0.98485 0.91480 0.93084 1.25737 0.93753 0.95914 1.02345 1.69995 1.44773 1.07664 1.33031 0.85339 0.78415 0.78195 0.78476 1.19672 1.19516 1.19502 0.90009 0.90935 0.88098 0.89581 0.90372 0.91163 0.87262 0.88508 0.89034 0.93845 0.89068 0.90253 0.92734 0.89148 0.90887 0.76239 0.75769 0.94989 0.93246 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.35 9.64 71.24 0.69 -2.67 16 2 C 0.14 6.26 7.00 42.14 0.30 6.55 16 3 C -0.33 -12.71 6.05 -20.15 -0.12 -12.83 16 4 C 0.61 22.00 7.57 86.66 0.66 22.66 16 5 O -0.58 -23.82 14.07 -4.02 -0.06 -23.87 16 6 N -0.61 -16.42 2.85 -791.48 -2.26 -18.68 16 7 C 0.08 1.58 5.11 86.93 0.44 2.02 16 8 C -0.13 -1.86 7.10 32.06 0.23 -1.63 16 9 C -0.09 -1.42 4.38 31.78 0.14 -1.28 16 10 C 0.16 3.61 2.41 45.34 0.11 3.72 16 11 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 12 C -0.10 -2.16 2.66 -9.72 -0.03 -2.18 16 13 H 0.06 1.71 7.04 -2.39 -0.02 1.69 16 14 C -0.11 -2.14 5.94 31.88 0.19 -1.95 16 15 C -0.12 -1.84 6.83 31.67 0.22 -1.63 16 16 C -0.15 -1.69 6.61 31.32 0.21 -1.49 16 17 C 0.11 1.72 4.11 31.32 0.13 1.85 16 18 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 19 O -0.56 -6.41 8.97 -148.98 -1.34 -7.75 16 20 C 0.07 2.43 10.28 85.65 0.88 3.31 16 21 N -0.33 -14.97 12.50 -56.27 -0.70 -15.68 16 22 N -0.34 -16.18 3.56 -336.70 -1.20 -17.38 16 23 C 0.27 14.17 5.97 85.64 0.51 14.69 16 24 C -0.56 -31.24 9.39 25.60 0.24 -31.00 16 25 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 26 C 0.02 1.31 5.46 84.65 0.46 1.77 16 27 N -0.92 -51.95 13.29 21.45 0.28 -51.66 16 28 Si 0.97 43.25 29.54 68.60 2.03 45.27 16 29 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 30 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 31 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 32 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 33 H 0.07 2.78 7.04 -2.39 -0.02 2.76 16 34 H 0.10 3.79 6.40 -2.39 -0.02 3.77 16 35 H 0.09 1.40 7.74 -2.39 -0.02 1.38 16 36 H 0.08 1.64 5.90 -2.39 -0.01 1.63 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.11 0.96 8.14 -2.38 -0.02 0.95 16 39 H 0.10 1.39 6.82 -2.38 -0.02 1.38 16 40 H 0.09 1.24 5.21 -2.39 -0.01 1.22 16 41 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 42 H 0.09 1.43 5.46 -2.39 -0.01 1.41 16 43 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 44 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.09 0.77 7.96 -2.39 -0.02 0.75 16 46 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 47 H 0.39 1.30 9.11 -74.06 -0.67 0.63 16 48 H 0.23 5.81 4.85 -2.91 -0.01 5.79 16 49 H 0.03 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.05 2.63 7.01 -2.39 -0.02 2.61 16 51 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -70.88 390.69 2.29 -68.59 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.29 Total: 21.25 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 5.25 Total: -0.09 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -3.88 Total: -103.39 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.39 Total: -31.62 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -70.88 2.29 -68.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897892113.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.149 kcal (2) G-P(sol) polarization free energy of solvation -70.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds