Wall clock time and date at job start Wed Apr 1 2020 07:38:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38047 * 126.28929 * 2 1
4 4 C 1.47429 * 126.41389 * 359.97438 * 3 2 1
5 5 O 1.21602 * 120.00334 * 359.97438 * 4 3 2
6 6 N 1.34777 * 119.99959 * 180.02562 * 4 3 2
7 7 C 1.46504 * 120.00344 * 180.02562 * 6 4 3
8 8 H 1.08996 * 109.46512 * 345.11669 * 7 6 4
9 9 C 1.52994 * 109.47059 * 225.11983 * 7 6 4
10 10 H 1.08999 * 109.47098 * 185.06526 * 9 7 6
11 11 C 1.53006 * 109.47267 * 305.06641 * 9 7 6
12 12 O 1.42895 * 109.47122 * 185.00119 * 11 9 7
13 13 C 1.53002 * 109.47453 * 65.06908 * 9 7 6
14 14 C 1.52998 * 117.50187 * 132.68404 * 13 9 7
15 15 C 1.52995 * 117.50065 * 64.06043 * 13 9 7
16 16 C 1.53002 * 109.47284 * 105.11719 * 7 6 4
17 17 C 1.53002 * 117.49848 * 8.62365 * 16 7 6
18 18 C 1.52999 * 60.00209 * 252.51262 * 17 16 7
19 19 C 1.41288 * 107.17128 * 180.24975 * 3 2 1
20 20 N 1.30446 * 108.02276 * 359.61520 * 19 3 2
21 21 N 1.34255 * 126.29305 * 180.02562 * 2 1 3
22 22 C 1.46502 * 125.75630 * 359.95391 * 21 2 1
23 23 C 1.50704 * 109.46554 * 90.00165 * 22 21 2
24 24 H 1.07995 * 120.00310 * 0.02562 * 23 22 21
25 25 C 1.37881 * 119.99346 * 180.02562 * 23 22 21
26 26 N 1.31517 * 119.99654 * 180.02562 * 25 23 22
27 27 Si 1.86797 * 120.00329 * 0.02562 * 25 23 22
28 28 H 1.48500 * 109.47294 * 89.99657 * 27 25 23
29 29 H 1.48501 * 109.47495 * 210.00230 * 27 25 23
30 30 H 1.48501 * 109.46899 * 329.99785 * 27 25 23
31 31 H 1.09001 * 109.47156 * 89.98073 * 1 2 3
32 32 H 1.09002 * 109.46658 * 209.97897 * 1 2 3
33 33 H 1.08997 * 109.47274 * 329.97250 * 1 2 3
34 34 H 0.97004 * 119.99698 * 359.97438 * 6 4 3
35 35 H 1.09002 * 109.46891 * 305.00151 * 11 9 7
36 36 H 1.08995 * 109.46981 * 65.00091 * 11 9 7
37 37 H 0.96700 * 114.00384 * 179.97438 * 12 11 9
38 38 H 1.09004 * 115.54676 * 278.39373 * 13 9 7
39 39 H 1.08996 * 117.49885 * 0.02562 * 14 13 9
40 40 H 1.08998 * 117.49675 * 145.02118 * 14 13 9
41 41 H 1.09005 * 117.50205 * 214.98395 * 15 13 9
42 42 H 1.09003 * 117.49784 * 359.97438 * 15 13 9
43 43 H 1.08994 * 115.54731 * 154.33064 * 16 7 6
44 44 H 1.09001 * 117.49603 * 0.02562 * 17 16 7
45 45 H 1.08997 * 117.50027 * 145.01827 * 17 16 7
46 46 H 1.08998 * 117.49740 * 252.51763 * 18 17 16
47 47 H 1.09000 * 117.51872 * 107.47797 * 18 17 16
48 48 H 1.07997 * 125.99323 * 179.73775 * 19 3 2
49 49 H 1.08994 * 109.47148 * 210.00162 * 22 21 2
50 50 H 1.08997 * 109.46521 * 330.00524 * 22 21 2
51 51 H 0.97005 * 119.99484 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3240 1.1127 0.0000
4 6 1.8857 2.5203 -0.0005
5 8 0.6995 2.7878 -0.0015
6 7 2.7998 3.5108 -0.0010
7 6 2.3643 4.9096 -0.0009
8 1 1.3079 4.9611 -0.2645
9 6 3.1841 5.6990 -1.0234
10 1 2.9235 6.7555 -0.9604
11 6 4.6749 5.5228 -0.7274
12 8 5.4365 6.3510 -1.6081
13 6 2.8790 5.1817 -2.4307
14 6 2.5847 6.2188 -3.5163
15 6 1.4521 5.3574 -2.9540
16 6 2.5724 5.5085 1.3915
17 6 3.3437 4.6703 2.4130
18 6 1.8319 4.8544 2.5598
19 6 3.6590 0.6500 -0.0059
20 7 3.6341 -0.6542 -0.0008
21 7 2.3017 -1.0821 -0.0005
22 6 1.8501 -2.4758 -0.0002
23 6 1.6945 -2.9536 -1.4209
24 1 1.9107 -2.2861 -2.2419
25 6 1.2760 -4.2431 -1.6726
26 7 1.1407 -4.6603 -2.9124
27 14 0.9014 -5.3974 -0.2525
28 1 -0.5295 -5.2711 0.1238
29 1 1.1835 -6.7961 -0.6639
30 1 1.7526 -5.0426 0.9115
31 1 -0.3633 0.0003 -1.0277
32 1 -0.3633 -0.8902 0.5135
33 1 -0.3634 0.8897 0.5142
34 1 3.7461 3.2974 -0.0006
35 1 4.8764 5.8083 0.3051
36 1 4.9542 4.4799 -0.8771
37 1 6.3926 6.2904 -1.4765
38 1 3.4164 4.2809 -2.7272
39 1 2.6088 7.2697 -3.2281
40 1 2.9286 6.0006 -4.5273
41 1 1.0509 4.5725 -3.5952
42 1 0.7306 5.8412 -2.2956
43 1 2.7069 6.5897 1.4228
44 1 3.7031 3.6923 2.0929
45 1 3.9859 5.2000 3.1166
46 1 1.4795 5.5054 3.3599
47 1 1.1962 3.9977 2.3362
48 1 4.5448 1.2677 -0.0114
49 1 2.5851 -3.0957 0.5132
50 1 0.8918 -2.5470 0.5142
51 1 0.8459 -5.5673 -3.0894
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000897902159.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 07:38:10
Heat of formation + Delta-G solvation = 32.022380 kcal
Electronic energy + Delta-G solvation = -31579.765638 eV
Core-core repulsion = 27482.307453 eV
Total energy + Delta-G solvation = -4097.458185 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-40.97930 -40.08492 -38.06941 -37.00817 -36.37960 -34.08712 -33.74872 -32.23348
-31.46212 -30.97516 -28.00414 -26.94092 -26.14085 -23.60425 -23.15798 -22.55517
-22.31957 -22.16153 -20.44529 -20.17860 -19.52547 -18.91956 -17.77437 -17.24143
-17.02858 -16.14417 -15.86281 -15.76690 -15.29304 -15.10248 -14.86746 -14.43579
-14.16322 -14.02996 -13.74237 -13.58731 -13.29452 -13.03572 -12.71979 -12.62509
-12.56050 -12.29955 -12.14256 -11.96369 -11.61998 -11.61382 -11.58959 -11.47431
-11.25522 -11.23220 -10.85841 -10.51649 -10.43213 -10.35154 -10.29229 -10.21005
-10.04931 -9.86744 -9.81205 -9.40650 -8.96220 -8.86558 -8.67543 -7.98737
-6.34499 -4.39273 2.11801 2.70433 3.01872 3.10240 3.16629 3.20289
3.43469 3.64406 3.80937 3.85014 3.99441 4.14136 4.34929 4.56541
4.81272 4.83977 4.86092 4.88627 4.97196 4.99674 5.04806 5.08444
5.14580 5.20498 5.33331 5.44010 5.45995 5.50347 5.55511 5.61787
5.66072 5.70810 5.77481 5.84504 5.89323 5.93456 6.00855 6.03258
6.10877 6.12716 6.22316 6.24606 6.42495 6.46697 6.57755 6.64420
6.99411 7.16620 7.38577 7.54061 7.70556 8.18178 8.25504 8.59115
8.68696 9.19333 10.77723
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.014469 B = 0.002757 C = 0.002606
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1934.665724 B =10152.121214 C =10740.728015
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.094 4.094
2 C 0.169 3.831
3 C -0.329 4.329
4 C 0.607 3.393
5 O -0.551 6.551
6 N -0.725 5.725
7 C 0.184 3.816
8 H 0.110 0.890
9 C -0.059 4.059
10 H 0.087 0.913
11 C 0.082 3.918
12 O -0.568 6.568
13 C -0.134 4.134
14 C -0.172 4.172
15 C -0.177 4.177
16 C -0.172 4.172
17 C -0.176 4.176
18 C -0.171 4.171
19 C 0.059 3.941
20 N -0.292 5.292
21 N -0.313 5.313
22 C 0.225 3.775
23 C -0.545 4.545
24 H 0.081 0.919
25 C 0.081 3.919
26 N -0.883 5.883
27 Si 0.872 3.128
28 H -0.270 1.270
29 H -0.278 1.278
30 H -0.263 1.263
31 H 0.086 0.914
32 H 0.069 0.931
33 H 0.095 0.905
34 H 0.395 0.605
35 H 0.052 0.948
36 H 0.044 0.956
37 H 0.376 0.624
38 H 0.101 0.899
39 H 0.090 0.910
40 H 0.089 0.911
41 H 0.093 0.907
42 H 0.092 0.908
43 H 0.108 0.892
44 H 0.098 0.902
45 H 0.089 0.911
46 H 0.090 0.910
47 H 0.099 0.901
48 H 0.174 0.826
49 H 0.055 0.945
50 H 0.048 0.952
51 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.096 22.002 7.975 23.951
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.032 3.968
3 C -0.344 4.344
4 C 0.398 3.602
5 O -0.430 6.430
6 N -0.377 5.377
7 C 0.078 3.922
8 H 0.128 0.872
9 C -0.079 4.079
10 H 0.105 0.895
11 C 0.004 3.996
12 O -0.373 6.373
13 C -0.152 4.152
14 C -0.209 4.209
15 C -0.214 4.214
16 C -0.191 4.191
17 C -0.213 4.213
18 C -0.207 4.207
19 C -0.128 4.128
20 N -0.112 5.112
21 N -0.090 5.090
22 C 0.106 3.894
23 C -0.583 4.583
24 H 0.100 0.900
25 C -0.124 4.124
26 N -0.519 5.519
27 Si 0.698 3.302
28 H -0.195 1.195
29 H -0.204 1.204
30 H -0.188 1.188
31 H 0.105 0.895
32 H 0.088 0.912
33 H 0.114 0.886
34 H 0.230 0.770
35 H 0.070 0.930
36 H 0.063 0.937
37 H 0.223 0.777
38 H 0.119 0.881
39 H 0.109 0.891
40 H 0.107 0.893
41 H 0.111 0.889
42 H 0.111 0.889
43 H 0.126 0.874
44 H 0.116 0.884
45 H 0.107 0.893
46 H 0.108 0.892
47 H 0.118 0.882
48 H 0.191 0.809
49 H 0.072 0.928
50 H 0.066 0.934
51 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 4.270 20.904 7.633 22.660
hybrid contribution 0.557 -0.371 0.700 0.968
sum 4.827 20.533 8.333 22.679
Atomic orbital electron populations
1.20591 0.86742 1.03639 1.04217 1.21468 0.94937 0.86411 0.93955
1.19679 0.92972 0.92680 1.29117 1.17249 0.85125 0.83783 0.74080
1.90689 1.16582 1.84236 1.51492 1.45774 1.09539 1.05152 1.77245
1.20395 1.00607 0.80015 0.91164 0.87189 1.21039 0.93450 1.00157
0.93220 0.89461 1.22189 0.91244 0.93555 0.92632 1.86510 1.21728
1.67739 1.61327 1.22058 0.99147 1.00531 0.93505 1.22910 1.03194
0.96564 0.98252 1.22931 0.91544 1.03059 1.03899 1.22819 1.06550
0.98508 0.91224 1.22954 0.94871 1.01754 1.01767 1.22924 0.94852
1.03414 0.99557 1.23694 0.96375 0.92561 1.00173 1.77145 0.98116
1.12370 1.23521 1.48895 1.02741 1.07534 1.49816 1.20148 0.95692
0.73342 1.00213 1.21084 1.48058 0.99203 0.89989 0.90047 1.24793
0.94290 0.97405 0.95868 1.69867 1.45094 1.18253 1.18678 0.86907
0.79531 0.81054 0.82699 1.19486 1.20352 1.18790 0.89505 0.91201
0.88627 0.76987 0.93004 0.93739 0.77718 0.88054 0.89106 0.89256
0.88885 0.88909 0.87356 0.88395 0.89278 0.89188 0.88215 0.80868
0.92758 0.93449 0.91961
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.62 9.57 36.01 0.34 -1.28 16
2 C 0.17 3.29 7.01 -81.60 -0.57 2.71 16
3 C -0.33 -5.65 6.13 -105.07 -0.64 -6.30 16
4 C 0.61 9.17 7.59 -12.52 -0.10 9.08 16
5 O -0.55 -9.61 14.06 5.28 0.07 -9.53 16
6 N -0.72 -7.94 3.05 -54.88 -0.17 -8.10 16
7 C 0.18 1.80 2.24 -67.93 -0.15 1.65 16
8 H 0.11 1.34 6.31 -51.93 -0.33 1.01 16
9 C -0.06 -0.53 2.02 -90.62 -0.18 -0.71 16
10 H 0.09 0.77 7.93 -51.93 -0.41 0.36 16
11 C 0.08 0.62 5.88 37.16 0.22 0.84 16
12 O -0.57 -4.66 13.42 -35.23 -0.47 -5.13 16
13 C -0.13 -1.42 4.61 -90.62 -0.42 -1.83 16
14 C -0.17 -1.73 10.18 -26.73 -0.27 -2.00 16
15 C -0.18 -1.94 9.72 -26.74 -0.26 -2.20 16
16 C -0.17 -1.47 4.65 -90.61 -0.42 -1.89 16
17 C -0.18 -1.49 9.71 -26.73 -0.26 -1.75 16
18 C -0.17 -1.67 10.17 -26.73 -0.27 -1.95 16
19 C 0.06 0.98 11.50 -16.98 -0.20 0.78 16
20 N -0.29 -6.01 12.50 30.86 0.39 -5.63 16
21 N -0.31 -6.78 3.56 -57.77 -0.21 -6.99 16
22 C 0.22 5.18 5.03 -5.19 -0.03 5.16 16
23 C -0.55 -14.84 9.94 -34.44 -0.34 -15.19 16
24 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16
25 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16
26 N -0.88 -25.75 13.96 55.43 0.77 -24.98 16
27 Si 0.87 19.65 27.47 -169.99 -4.67 14.98 16
28 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16
29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
30 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16
31 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16
32 H 0.07 1.14 7.05 -51.93 -0.37 0.77 16
33 H 0.10 1.56 6.50 -51.93 -0.34 1.22 16
34 H 0.39 3.64 5.47 -40.82 -0.22 3.41 16
35 H 0.05 0.34 7.11 -51.93 -0.37 -0.03 16
36 H 0.04 0.32 6.74 -51.93 -0.35 -0.03 16
37 H 0.38 1.53 9.12 45.56 0.42 1.95 16
38 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16
39 H 0.09 0.85 8.07 -51.93 -0.42 0.44 16
40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16
41 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16
42 H 0.09 0.98 7.85 -51.93 -0.41 0.57 16
43 H 0.11 0.80 8.11 -51.93 -0.42 0.38 16
44 H 0.10 0.89 6.70 -51.93 -0.35 0.55 16
45 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16
46 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16
47 H 0.10 1.24 7.74 -51.93 -0.40 0.84 16
48 H 0.17 2.02 7.50 -52.49 -0.39 1.62 16
49 H 0.05 1.26 7.20 -51.93 -0.37 0.88 16
50 H 0.05 1.01 6.44 -51.93 -0.33 0.67 16
51 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16
LS Contribution 411.24 15.07 6.20 6.20
Total: -1.00 -32.35 411.24 -8.93 -41.28
By element:
Atomic # 1 Polarization: 17.86 SS G_CDS: -7.20 Total: 10.66 kcal
Atomic # 6 Polarization: -9.12 SS G_CDS: -3.65 Total: -12.76 kcal
Atomic # 7 Polarization: -46.49 SS G_CDS: 0.79 Total: -45.70 kcal
Atomic # 8 Polarization: -14.26 SS G_CDS: -0.40 Total: -14.66 kcal
Atomic # 14 Polarization: 19.65 SS G_CDS: -4.67 Total: 14.98 kcal
Total LS contribution 6.20 Total: 6.20 kcal
Total: -32.35 -8.93 -41.28 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000897902159.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.303 kcal
(2) G-P(sol) polarization free energy of solvation -32.354 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.949 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.022 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds