Wall clock time and date at job start Wed Apr 1 2020 07:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38047 * 126.28929 * 2 1 4 4 C 1.47429 * 126.41389 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00334 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99959 * 180.02562 * 4 3 2 7 7 C 1.46504 * 120.00344 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.46512 * 345.11669 * 7 6 4 9 9 C 1.52994 * 109.47059 * 225.11983 * 7 6 4 10 10 H 1.08999 * 109.47098 * 185.06526 * 9 7 6 11 11 C 1.53006 * 109.47267 * 305.06641 * 9 7 6 12 12 O 1.42895 * 109.47122 * 185.00119 * 11 9 7 13 13 C 1.53002 * 109.47453 * 65.06908 * 9 7 6 14 14 C 1.52998 * 117.50187 * 132.68404 * 13 9 7 15 15 C 1.52995 * 117.50065 * 64.06043 * 13 9 7 16 16 C 1.53002 * 109.47284 * 105.11719 * 7 6 4 17 17 C 1.53002 * 117.49848 * 8.62365 * 16 7 6 18 18 C 1.52999 * 60.00209 * 252.51262 * 17 16 7 19 19 C 1.41288 * 107.17128 * 180.24975 * 3 2 1 20 20 N 1.30446 * 108.02276 * 359.61520 * 19 3 2 21 21 N 1.34255 * 126.29305 * 180.02562 * 2 1 3 22 22 C 1.46502 * 125.75630 * 359.95391 * 21 2 1 23 23 C 1.50704 * 109.46554 * 90.00165 * 22 21 2 24 24 H 1.07995 * 120.00310 * 0.02562 * 23 22 21 25 25 C 1.37881 * 119.99346 * 180.02562 * 23 22 21 26 26 N 1.31517 * 119.99654 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 120.00329 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.47294 * 89.99657 * 27 25 23 29 29 H 1.48501 * 109.47495 * 210.00230 * 27 25 23 30 30 H 1.48501 * 109.46899 * 329.99785 * 27 25 23 31 31 H 1.09001 * 109.47156 * 89.98073 * 1 2 3 32 32 H 1.09002 * 109.46658 * 209.97897 * 1 2 3 33 33 H 1.08997 * 109.47274 * 329.97250 * 1 2 3 34 34 H 0.97004 * 119.99698 * 359.97438 * 6 4 3 35 35 H 1.09002 * 109.46891 * 305.00151 * 11 9 7 36 36 H 1.08995 * 109.46981 * 65.00091 * 11 9 7 37 37 H 0.96700 * 114.00384 * 179.97438 * 12 11 9 38 38 H 1.09004 * 115.54676 * 278.39373 * 13 9 7 39 39 H 1.08996 * 117.49885 * 0.02562 * 14 13 9 40 40 H 1.08998 * 117.49675 * 145.02118 * 14 13 9 41 41 H 1.09005 * 117.50205 * 214.98395 * 15 13 9 42 42 H 1.09003 * 117.49784 * 359.97438 * 15 13 9 43 43 H 1.08994 * 115.54731 * 154.33064 * 16 7 6 44 44 H 1.09001 * 117.49603 * 0.02562 * 17 16 7 45 45 H 1.08997 * 117.50027 * 145.01827 * 17 16 7 46 46 H 1.08998 * 117.49740 * 252.51763 * 18 17 16 47 47 H 1.09000 * 117.51872 * 107.47797 * 18 17 16 48 48 H 1.07997 * 125.99323 * 179.73775 * 19 3 2 49 49 H 1.08994 * 109.47148 * 210.00162 * 22 21 2 50 50 H 1.08997 * 109.46521 * 330.00524 * 22 21 2 51 51 H 0.97005 * 119.99484 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5203 -0.0005 5 8 0.6995 2.7878 -0.0015 6 7 2.7998 3.5108 -0.0010 7 6 2.3643 4.9096 -0.0009 8 1 1.3079 4.9611 -0.2645 9 6 3.1841 5.6990 -1.0234 10 1 2.9235 6.7555 -0.9604 11 6 4.6749 5.5228 -0.7274 12 8 5.4365 6.3510 -1.6081 13 6 2.8790 5.1817 -2.4307 14 6 2.5847 6.2188 -3.5163 15 6 1.4521 5.3574 -2.9540 16 6 2.5724 5.5085 1.3915 17 6 3.3437 4.6703 2.4130 18 6 1.8319 4.8544 2.5598 19 6 3.6590 0.6500 -0.0059 20 7 3.6341 -0.6542 -0.0008 21 7 2.3017 -1.0821 -0.0005 22 6 1.8501 -2.4758 -0.0002 23 6 1.6945 -2.9536 -1.4209 24 1 1.9107 -2.2861 -2.2419 25 6 1.2760 -4.2431 -1.6726 26 7 1.1407 -4.6603 -2.9124 27 14 0.9014 -5.3974 -0.2525 28 1 -0.5295 -5.2711 0.1238 29 1 1.1835 -6.7961 -0.6639 30 1 1.7526 -5.0426 0.9115 31 1 -0.3633 0.0003 -1.0277 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3634 0.8897 0.5142 34 1 3.7461 3.2974 -0.0006 35 1 4.8764 5.8083 0.3051 36 1 4.9542 4.4799 -0.8771 37 1 6.3926 6.2904 -1.4765 38 1 3.4164 4.2809 -2.7272 39 1 2.6088 7.2697 -3.2281 40 1 2.9286 6.0006 -4.5273 41 1 1.0509 4.5725 -3.5952 42 1 0.7306 5.8412 -2.2956 43 1 2.7069 6.5897 1.4228 44 1 3.7031 3.6923 2.0929 45 1 3.9859 5.2000 3.1166 46 1 1.4795 5.5054 3.3599 47 1 1.1962 3.9977 2.3362 48 1 4.5448 1.2677 -0.0114 49 1 2.5851 -3.0957 0.5132 50 1 0.8918 -2.5470 0.5142 51 1 0.8459 -5.5673 -3.0894 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897902159.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:38:10 Heat of formation + Delta-G solvation = 32.022380 kcal Electronic energy + Delta-G solvation = -31579.765638 eV Core-core repulsion = 27482.307453 eV Total energy + Delta-G solvation = -4097.458185 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.97930 -40.08492 -38.06941 -37.00817 -36.37960 -34.08712 -33.74872 -32.23348 -31.46212 -30.97516 -28.00414 -26.94092 -26.14085 -23.60425 -23.15798 -22.55517 -22.31957 -22.16153 -20.44529 -20.17860 -19.52547 -18.91956 -17.77437 -17.24143 -17.02858 -16.14417 -15.86281 -15.76690 -15.29304 -15.10248 -14.86746 -14.43579 -14.16322 -14.02996 -13.74237 -13.58731 -13.29452 -13.03572 -12.71979 -12.62509 -12.56050 -12.29955 -12.14256 -11.96369 -11.61998 -11.61382 -11.58959 -11.47431 -11.25522 -11.23220 -10.85841 -10.51649 -10.43213 -10.35154 -10.29229 -10.21005 -10.04931 -9.86744 -9.81205 -9.40650 -8.96220 -8.86558 -8.67543 -7.98737 -6.34499 -4.39273 2.11801 2.70433 3.01872 3.10240 3.16629 3.20289 3.43469 3.64406 3.80937 3.85014 3.99441 4.14136 4.34929 4.56541 4.81272 4.83977 4.86092 4.88627 4.97196 4.99674 5.04806 5.08444 5.14580 5.20498 5.33331 5.44010 5.45995 5.50347 5.55511 5.61787 5.66072 5.70810 5.77481 5.84504 5.89323 5.93456 6.00855 6.03258 6.10877 6.12716 6.22316 6.24606 6.42495 6.46697 6.57755 6.64420 6.99411 7.16620 7.38577 7.54061 7.70556 8.18178 8.25504 8.59115 8.68696 9.19333 10.77723 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014469 B = 0.002757 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.665724 B =10152.121214 C =10740.728015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.169 3.831 3 C -0.329 4.329 4 C 0.607 3.393 5 O -0.551 6.551 6 N -0.725 5.725 7 C 0.184 3.816 8 H 0.110 0.890 9 C -0.059 4.059 10 H 0.087 0.913 11 C 0.082 3.918 12 O -0.568 6.568 13 C -0.134 4.134 14 C -0.172 4.172 15 C -0.177 4.177 16 C -0.172 4.172 17 C -0.176 4.176 18 C -0.171 4.171 19 C 0.059 3.941 20 N -0.292 5.292 21 N -0.313 5.313 22 C 0.225 3.775 23 C -0.545 4.545 24 H 0.081 0.919 25 C 0.081 3.919 26 N -0.883 5.883 27 Si 0.872 3.128 28 H -0.270 1.270 29 H -0.278 1.278 30 H -0.263 1.263 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.395 0.605 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.376 0.624 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.099 0.901 48 H 0.174 0.826 49 H 0.055 0.945 50 H 0.048 0.952 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.096 22.002 7.975 23.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.032 3.968 3 C -0.344 4.344 4 C 0.398 3.602 5 O -0.430 6.430 6 N -0.377 5.377 7 C 0.078 3.922 8 H 0.128 0.872 9 C -0.079 4.079 10 H 0.105 0.895 11 C 0.004 3.996 12 O -0.373 6.373 13 C -0.152 4.152 14 C -0.209 4.209 15 C -0.214 4.214 16 C -0.191 4.191 17 C -0.213 4.213 18 C -0.207 4.207 19 C -0.128 4.128 20 N -0.112 5.112 21 N -0.090 5.090 22 C 0.106 3.894 23 C -0.583 4.583 24 H 0.100 0.900 25 C -0.124 4.124 26 N -0.519 5.519 27 Si 0.698 3.302 28 H -0.195 1.195 29 H -0.204 1.204 30 H -0.188 1.188 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.230 0.770 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.223 0.777 38 H 0.119 0.881 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.126 0.874 44 H 0.116 0.884 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.118 0.882 48 H 0.191 0.809 49 H 0.072 0.928 50 H 0.066 0.934 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.270 20.904 7.633 22.660 hybrid contribution 0.557 -0.371 0.700 0.968 sum 4.827 20.533 8.333 22.679 Atomic orbital electron populations 1.20591 0.86742 1.03639 1.04217 1.21468 0.94937 0.86411 0.93955 1.19679 0.92972 0.92680 1.29117 1.17249 0.85125 0.83783 0.74080 1.90689 1.16582 1.84236 1.51492 1.45774 1.09539 1.05152 1.77245 1.20395 1.00607 0.80015 0.91164 0.87189 1.21039 0.93450 1.00157 0.93220 0.89461 1.22189 0.91244 0.93555 0.92632 1.86510 1.21728 1.67739 1.61327 1.22058 0.99147 1.00531 0.93505 1.22910 1.03194 0.96564 0.98252 1.22931 0.91544 1.03059 1.03899 1.22819 1.06550 0.98508 0.91224 1.22954 0.94871 1.01754 1.01767 1.22924 0.94852 1.03414 0.99557 1.23694 0.96375 0.92561 1.00173 1.77145 0.98116 1.12370 1.23521 1.48895 1.02741 1.07534 1.49816 1.20148 0.95692 0.73342 1.00213 1.21084 1.48058 0.99203 0.89989 0.90047 1.24793 0.94290 0.97405 0.95868 1.69867 1.45094 1.18253 1.18678 0.86907 0.79531 0.81054 0.82699 1.19486 1.20352 1.18790 0.89505 0.91201 0.88627 0.76987 0.93004 0.93739 0.77718 0.88054 0.89106 0.89256 0.88885 0.88909 0.87356 0.88395 0.89278 0.89188 0.88215 0.80868 0.92758 0.93449 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.57 36.01 0.34 -1.28 16 2 C 0.17 3.29 7.01 -81.60 -0.57 2.71 16 3 C -0.33 -5.65 6.13 -105.07 -0.64 -6.30 16 4 C 0.61 9.17 7.59 -12.52 -0.10 9.08 16 5 O -0.55 -9.61 14.06 5.28 0.07 -9.53 16 6 N -0.72 -7.94 3.05 -54.88 -0.17 -8.10 16 7 C 0.18 1.80 2.24 -67.93 -0.15 1.65 16 8 H 0.11 1.34 6.31 -51.93 -0.33 1.01 16 9 C -0.06 -0.53 2.02 -90.62 -0.18 -0.71 16 10 H 0.09 0.77 7.93 -51.93 -0.41 0.36 16 11 C 0.08 0.62 5.88 37.16 0.22 0.84 16 12 O -0.57 -4.66 13.42 -35.23 -0.47 -5.13 16 13 C -0.13 -1.42 4.61 -90.62 -0.42 -1.83 16 14 C -0.17 -1.73 10.18 -26.73 -0.27 -2.00 16 15 C -0.18 -1.94 9.72 -26.74 -0.26 -2.20 16 16 C -0.17 -1.47 4.65 -90.61 -0.42 -1.89 16 17 C -0.18 -1.49 9.71 -26.73 -0.26 -1.75 16 18 C -0.17 -1.67 10.17 -26.73 -0.27 -1.95 16 19 C 0.06 0.98 11.50 -16.98 -0.20 0.78 16 20 N -0.29 -6.01 12.50 30.86 0.39 -5.63 16 21 N -0.31 -6.78 3.56 -57.77 -0.21 -6.99 16 22 C 0.22 5.18 5.03 -5.19 -0.03 5.16 16 23 C -0.55 -14.84 9.94 -34.44 -0.34 -15.19 16 24 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 25 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 26 N -0.88 -25.75 13.96 55.43 0.77 -24.98 16 27 Si 0.87 19.65 27.47 -169.99 -4.67 14.98 16 28 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 31 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.07 1.14 7.05 -51.93 -0.37 0.77 16 33 H 0.10 1.56 6.50 -51.93 -0.34 1.22 16 34 H 0.39 3.64 5.47 -40.82 -0.22 3.41 16 35 H 0.05 0.34 7.11 -51.93 -0.37 -0.03 16 36 H 0.04 0.32 6.74 -51.93 -0.35 -0.03 16 37 H 0.38 1.53 9.12 45.56 0.42 1.95 16 38 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.09 0.85 8.07 -51.93 -0.42 0.44 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.09 0.98 7.85 -51.93 -0.41 0.57 16 43 H 0.11 0.80 8.11 -51.93 -0.42 0.38 16 44 H 0.10 0.89 6.70 -51.93 -0.35 0.55 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.10 1.24 7.74 -51.93 -0.40 0.84 16 48 H 0.17 2.02 7.50 -52.49 -0.39 1.62 16 49 H 0.05 1.26 7.20 -51.93 -0.37 0.88 16 50 H 0.05 1.01 6.44 -51.93 -0.33 0.67 16 51 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 411.24 15.07 6.20 6.20 Total: -1.00 -32.35 411.24 -8.93 -41.28 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -7.20 Total: 10.66 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -3.65 Total: -12.76 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.79 Total: -45.70 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.40 Total: -14.66 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.67 Total: 14.98 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.35 -8.93 -41.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897902159.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.303 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds