Wall clock time and date at job start Wed Apr 1 2020 07:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38047 * 126.28929 * 2 1 4 4 C 1.47429 * 126.41389 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00334 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99959 * 180.02562 * 4 3 2 7 7 C 1.46504 * 120.00344 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.46512 * 345.11669 * 7 6 4 9 9 C 1.52994 * 109.47059 * 225.11983 * 7 6 4 10 10 H 1.08999 * 109.47098 * 185.06526 * 9 7 6 11 11 C 1.53006 * 109.47267 * 305.06641 * 9 7 6 12 12 O 1.42895 * 109.47122 * 185.00119 * 11 9 7 13 13 C 1.53002 * 109.47453 * 65.06908 * 9 7 6 14 14 C 1.52998 * 117.50187 * 132.68404 * 13 9 7 15 15 C 1.52995 * 117.50065 * 64.06043 * 13 9 7 16 16 C 1.53002 * 109.47284 * 105.11719 * 7 6 4 17 17 C 1.53002 * 117.49848 * 8.62365 * 16 7 6 18 18 C 1.52999 * 60.00209 * 252.51262 * 17 16 7 19 19 C 1.41288 * 107.17128 * 180.24975 * 3 2 1 20 20 N 1.30446 * 108.02276 * 359.61520 * 19 3 2 21 21 N 1.34255 * 126.29305 * 180.02562 * 2 1 3 22 22 C 1.46502 * 125.75630 * 359.95391 * 21 2 1 23 23 C 1.50704 * 109.46554 * 90.00165 * 22 21 2 24 24 H 1.07995 * 120.00310 * 0.02562 * 23 22 21 25 25 C 1.37881 * 119.99346 * 180.02562 * 23 22 21 26 26 N 1.31517 * 119.99654 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 120.00329 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.47294 * 89.99657 * 27 25 23 29 29 H 1.48501 * 109.47495 * 210.00230 * 27 25 23 30 30 H 1.48501 * 109.46899 * 329.99785 * 27 25 23 31 31 H 1.09001 * 109.47156 * 89.98073 * 1 2 3 32 32 H 1.09002 * 109.46658 * 209.97897 * 1 2 3 33 33 H 1.08997 * 109.47274 * 329.97250 * 1 2 3 34 34 H 0.97004 * 119.99698 * 359.97438 * 6 4 3 35 35 H 1.09002 * 109.46891 * 305.00151 * 11 9 7 36 36 H 1.08995 * 109.46981 * 65.00091 * 11 9 7 37 37 H 0.96700 * 114.00384 * 179.97438 * 12 11 9 38 38 H 1.09004 * 115.54676 * 278.39373 * 13 9 7 39 39 H 1.08996 * 117.49885 * 0.02562 * 14 13 9 40 40 H 1.08998 * 117.49675 * 145.02118 * 14 13 9 41 41 H 1.09005 * 117.50205 * 214.98395 * 15 13 9 42 42 H 1.09003 * 117.49784 * 359.97438 * 15 13 9 43 43 H 1.08994 * 115.54731 * 154.33064 * 16 7 6 44 44 H 1.09001 * 117.49603 * 0.02562 * 17 16 7 45 45 H 1.08997 * 117.50027 * 145.01827 * 17 16 7 46 46 H 1.08998 * 117.49740 * 252.51763 * 18 17 16 47 47 H 1.09000 * 117.51872 * 107.47797 * 18 17 16 48 48 H 1.07997 * 125.99323 * 179.73775 * 19 3 2 49 49 H 1.08994 * 109.47148 * 210.00162 * 22 21 2 50 50 H 1.08997 * 109.46521 * 330.00524 * 22 21 2 51 51 H 0.97005 * 119.99484 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5203 -0.0005 5 8 0.6995 2.7878 -0.0015 6 7 2.7998 3.5108 -0.0010 7 6 2.3643 4.9096 -0.0009 8 1 1.3079 4.9611 -0.2645 9 6 3.1841 5.6990 -1.0234 10 1 2.9235 6.7555 -0.9604 11 6 4.6749 5.5228 -0.7274 12 8 5.4365 6.3510 -1.6081 13 6 2.8790 5.1817 -2.4307 14 6 2.5847 6.2188 -3.5163 15 6 1.4521 5.3574 -2.9540 16 6 2.5724 5.5085 1.3915 17 6 3.3437 4.6703 2.4130 18 6 1.8319 4.8544 2.5598 19 6 3.6590 0.6500 -0.0059 20 7 3.6341 -0.6542 -0.0008 21 7 2.3017 -1.0821 -0.0005 22 6 1.8501 -2.4758 -0.0002 23 6 1.6945 -2.9536 -1.4209 24 1 1.9107 -2.2861 -2.2419 25 6 1.2760 -4.2431 -1.6726 26 7 1.1407 -4.6603 -2.9124 27 14 0.9014 -5.3974 -0.2525 28 1 -0.5295 -5.2711 0.1238 29 1 1.1835 -6.7961 -0.6639 30 1 1.7526 -5.0426 0.9115 31 1 -0.3633 0.0003 -1.0277 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3634 0.8897 0.5142 34 1 3.7461 3.2974 -0.0006 35 1 4.8764 5.8083 0.3051 36 1 4.9542 4.4799 -0.8771 37 1 6.3926 6.2904 -1.4765 38 1 3.4164 4.2809 -2.7272 39 1 2.6088 7.2697 -3.2281 40 1 2.9286 6.0006 -4.5273 41 1 1.0509 4.5725 -3.5952 42 1 0.7306 5.8412 -2.2956 43 1 2.7069 6.5897 1.4228 44 1 3.7031 3.6923 2.0929 45 1 3.9859 5.2000 3.1166 46 1 1.4795 5.5054 3.3599 47 1 1.1962 3.9977 2.3362 48 1 4.5448 1.2677 -0.0114 49 1 2.5851 -3.0957 0.5132 50 1 0.8918 -2.5470 0.5142 51 1 0.8459 -5.5673 -3.0894 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897902159.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:38:06 Heat of formation + Delta-G solvation = 10.494189 kcal Electronic energy + Delta-G solvation = -31580.699171 eV Core-core repulsion = 27482.307453 eV Total energy + Delta-G solvation = -4098.391718 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = -2.76 seconds Orbital eigenvalues (eV) -42.37441 -41.08059 -39.09529 -37.83824 -37.02755 -35.79115 -34.88894 -33.95751 -32.86885 -32.03737 -29.65304 -28.32149 -27.06024 -24.99007 -24.31890 -23.61189 -23.16261 -23.11631 -21.56392 -21.13643 -20.65247 -20.16209 -19.29791 -18.73012 -18.01481 -17.03259 -16.87130 -16.70776 -16.55344 -16.32184 -16.01722 -15.91494 -15.47640 -15.19289 -14.80455 -14.58833 -14.42851 -14.36110 -14.13127 -13.91593 -13.79608 -13.71994 -13.39536 -13.14157 -13.00796 -12.78071 -12.57273 -12.39380 -12.33167 -12.22178 -12.16523 -12.00320 -11.86441 -11.73776 -11.24989 -11.12183 -11.03747 -10.92980 -10.74701 -10.72780 -10.55657 -10.27140 -9.99158 -9.43226 -8.44319 -6.56419 0.67423 1.32002 1.32986 1.34378 1.44293 1.62131 2.23506 2.34582 2.58081 2.86003 2.88159 3.03017 3.37376 3.58714 3.70855 3.71563 3.81168 4.07821 4.09665 4.11504 4.16724 4.19227 4.20010 4.29402 4.37714 4.40533 4.47122 4.54148 4.61007 4.68238 4.70995 4.73311 4.80794 4.82789 4.88275 4.94896 5.02457 5.05600 5.07086 5.14301 5.16600 5.16802 5.27026 5.30569 5.36053 5.38242 5.60412 5.69164 5.82744 6.19934 6.46534 6.63993 6.80349 7.02777 7.07538 7.42535 8.72215 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014469 B = 0.002757 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.665724 B =10152.121214 C =10740.728015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.146 3.854 3 C -0.328 4.328 4 C 0.609 3.391 5 O -0.577 6.577 6 N -0.705 5.705 7 C 0.187 3.813 8 H 0.086 0.914 9 C -0.052 4.052 10 H 0.095 0.905 11 C 0.083 3.917 12 O -0.586 6.586 13 C -0.138 4.138 14 C -0.162 4.162 15 C -0.190 4.190 16 C -0.161 4.161 17 C -0.164 4.164 18 C -0.187 4.187 19 C 0.079 3.921 20 N -0.332 5.332 21 N -0.338 5.338 22 C 0.234 3.766 23 C -0.553 4.553 24 H 0.025 0.975 25 C 0.023 3.977 26 N -0.935 5.935 27 Si 0.949 3.051 28 H -0.252 1.252 29 H -0.277 1.277 30 H -0.242 1.242 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.407 0.593 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.394 0.606 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.130 0.870 44 H 0.092 0.908 45 H 0.110 0.890 46 H 0.102 0.898 47 H 0.068 0.932 48 H 0.223 0.777 49 H 0.056 0.944 50 H 0.070 0.930 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.513 23.749 10.495 26.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.011 3.989 3 C -0.343 4.343 4 C 0.399 3.601 5 O -0.458 6.458 6 N -0.357 5.357 7 C 0.082 3.918 8 H 0.104 0.896 9 C -0.071 4.071 10 H 0.113 0.887 11 C 0.006 3.994 12 O -0.394 6.394 13 C -0.156 4.156 14 C -0.199 4.199 15 C -0.227 4.227 16 C -0.180 4.180 17 C -0.201 4.201 18 C -0.224 4.224 19 C -0.108 4.108 20 N -0.151 5.151 21 N -0.115 5.115 22 C 0.114 3.886 23 C -0.591 4.591 24 H 0.043 0.957 25 C -0.177 4.177 26 N -0.573 5.573 27 Si 0.770 3.230 28 H -0.177 1.177 29 H -0.202 1.202 30 H -0.165 1.165 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.244 0.756 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.244 0.756 38 H 0.106 0.894 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.148 0.852 44 H 0.110 0.890 45 H 0.128 0.872 46 H 0.120 0.880 47 H 0.087 0.913 48 H 0.240 0.760 49 H 0.074 0.926 50 H 0.087 0.913 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.733 22.703 10.161 25.525 hybrid contribution 0.166 -0.737 -0.207 0.783 sum 5.899 21.966 9.954 24.827 Atomic orbital electron populations 1.20575 0.85900 1.04499 1.03649 1.21959 0.95893 0.86765 0.94287 1.20008 0.93157 0.93347 1.27777 1.17039 0.85207 0.83668 0.74230 1.90682 1.17832 1.84446 1.52817 1.45591 1.09516 1.05064 1.75500 1.20399 0.99550 0.79159 0.92680 0.89610 1.20973 0.94625 1.00047 0.91459 0.88710 1.22163 0.89954 0.93814 0.93494 1.86457 1.23415 1.67819 1.61675 1.22115 0.98268 1.00341 0.94861 1.22939 1.01891 0.96932 0.98149 1.22896 0.92114 1.03324 1.04357 1.22791 1.06030 0.99532 0.89693 1.23015 0.93961 1.01577 1.01582 1.22877 0.95624 1.03050 1.00895 1.24447 0.97647 0.91627 0.97110 1.77086 0.97983 1.14451 1.25626 1.48743 1.03510 1.07253 1.52002 1.19875 0.96743 0.74636 0.97328 1.21183 1.48143 0.98841 0.90949 0.95667 1.25827 0.93624 0.99230 0.99051 1.70030 1.46592 1.19093 1.21606 0.85701 0.80449 0.77812 0.79042 1.17662 1.20240 1.16514 0.90709 0.90286 0.87752 0.75559 0.91134 0.93418 0.75616 0.89442 0.87970 0.89268 0.90534 0.88646 0.85183 0.88965 0.87157 0.87965 0.91345 0.76033 0.92560 0.91267 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.12 9.57 71.24 0.68 -2.44 16 2 C 0.15 5.76 7.01 42.14 0.30 6.06 16 3 C -0.33 -11.11 6.13 -20.15 -0.12 -11.24 16 4 C 0.61 18.10 7.59 86.66 0.66 18.76 16 5 O -0.58 -20.33 14.06 -4.04 -0.06 -20.39 16 6 N -0.70 -14.28 3.05 -445.80 -1.36 -15.64 16 7 C 0.19 3.35 2.24 44.99 0.10 3.45 16 8 H 0.09 2.05 6.31 -2.39 -0.02 2.04 16 9 C -0.05 -0.81 2.02 -10.79 -0.02 -0.83 16 10 H 0.09 1.40 7.93 -2.39 -0.02 1.38 16 11 C 0.08 0.99 5.88 71.98 0.42 1.41 16 12 O -0.59 -7.76 13.42 -148.98 -2.00 -9.76 16 13 C -0.14 -2.77 4.61 -10.79 -0.05 -2.82 16 14 C -0.16 -3.10 10.18 30.59 0.31 -2.78 16 15 C -0.19 -4.18 9.72 30.59 0.30 -3.88 16 16 C -0.16 -2.31 4.65 -10.79 -0.05 -2.36 16 17 C -0.16 -2.24 9.71 30.59 0.30 -1.95 16 18 C -0.19 -3.35 10.17 30.60 0.31 -3.04 16 19 C 0.08 2.48 11.50 85.65 0.99 3.46 16 20 N -0.33 -13.61 12.50 -56.28 -0.70 -14.32 16 21 N -0.34 -14.81 3.56 -336.70 -1.20 -16.01 16 22 C 0.23 10.84 5.03 85.63 0.43 11.27 16 23 C -0.55 -31.28 9.94 25.60 0.25 -31.03 16 24 H 0.02 1.66 8.06 -2.91 -0.02 1.63 16 25 C 0.02 1.27 5.47 84.66 0.46 1.73 16 26 N -0.94 -56.56 13.96 21.45 0.30 -56.26 16 27 Si 0.95 40.30 27.47 68.60 1.88 42.19 16 28 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 29 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 30 H -0.24 -9.37 6.54 99.48 0.65 -8.72 16 31 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.08 2.58 7.05 -2.39 -0.02 2.56 16 33 H 0.10 3.46 6.50 -2.39 -0.02 3.45 16 34 H 0.41 6.34 5.47 -92.70 -0.51 5.84 16 35 H 0.07 0.60 7.11 -2.39 -0.02 0.58 16 36 H 0.05 0.53 6.74 -2.39 -0.02 0.51 16 37 H 0.39 1.94 9.12 -74.06 -0.68 1.26 16 38 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.10 1.73 8.07 -2.39 -0.02 1.71 16 40 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 42 H 0.10 2.02 7.85 -2.39 -0.02 2.00 16 43 H 0.13 1.39 8.11 -2.39 -0.02 1.37 16 44 H 0.09 1.38 6.70 -2.39 -0.02 1.36 16 45 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.07 1.69 7.74 -2.39 -0.02 1.67 16 48 H 0.22 4.39 7.50 -2.91 -0.02 4.37 16 49 H 0.06 2.57 7.20 -2.39 -0.02 2.55 16 50 H 0.07 2.88 6.44 -2.39 -0.02 2.86 16 51 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -74.64 411.24 1.86 -72.79 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: -0.27 Total: 33.61 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 5.26 Total: -16.21 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -2.96 Total: -102.23 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -2.06 Total: -30.15 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 1.88 Total: 42.19 kcal Total: -74.64 1.86 -72.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897902159.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.281 kcal (2) G-P(sol) polarization free energy of solvation -74.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -2.76 seconds