Wall clock time and date at job start Wed Apr 1 2020 07:38:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38047 * 126.28929 * 2 1
4 4 C 1.47429 * 126.41389 * 359.97438 * 3 2 1
5 5 O 1.21602 * 120.00334 * 359.97438 * 4 3 2
6 6 N 1.34777 * 119.99959 * 180.02562 * 4 3 2
7 7 C 1.46504 * 120.00344 * 180.02562 * 6 4 3
8 8 H 1.08996 * 109.46512 * 345.11669 * 7 6 4
9 9 C 1.52994 * 109.47059 * 225.11983 * 7 6 4
10 10 H 1.08999 * 109.47098 * 185.06526 * 9 7 6
11 11 C 1.53006 * 109.47267 * 305.06641 * 9 7 6
12 12 O 1.42895 * 109.47122 * 185.00119 * 11 9 7
13 13 C 1.53002 * 109.47453 * 65.06908 * 9 7 6
14 14 C 1.52998 * 117.50187 * 132.68404 * 13 9 7
15 15 C 1.52995 * 117.50065 * 64.06043 * 13 9 7
16 16 C 1.53002 * 109.47284 * 105.11719 * 7 6 4
17 17 C 1.53002 * 117.49848 * 8.62365 * 16 7 6
18 18 C 1.52999 * 60.00209 * 252.51262 * 17 16 7
19 19 C 1.41288 * 107.17128 * 180.24975 * 3 2 1
20 20 N 1.30446 * 108.02276 * 359.61520 * 19 3 2
21 21 N 1.34255 * 126.29305 * 180.02562 * 2 1 3
22 22 C 1.46502 * 125.75630 * 359.95391 * 21 2 1
23 23 C 1.50704 * 109.46554 * 90.00165 * 22 21 2
24 24 H 1.07995 * 120.00310 * 0.02562 * 23 22 21
25 25 C 1.37881 * 119.99346 * 180.02562 * 23 22 21
26 26 N 1.31517 * 119.99654 * 180.02562 * 25 23 22
27 27 Si 1.86797 * 120.00329 * 0.02562 * 25 23 22
28 28 H 1.48500 * 109.47294 * 89.99657 * 27 25 23
29 29 H 1.48501 * 109.47495 * 210.00230 * 27 25 23
30 30 H 1.48501 * 109.46899 * 329.99785 * 27 25 23
31 31 H 1.09001 * 109.47156 * 89.98073 * 1 2 3
32 32 H 1.09002 * 109.46658 * 209.97897 * 1 2 3
33 33 H 1.08997 * 109.47274 * 329.97250 * 1 2 3
34 34 H 0.97004 * 119.99698 * 359.97438 * 6 4 3
35 35 H 1.09002 * 109.46891 * 305.00151 * 11 9 7
36 36 H 1.08995 * 109.46981 * 65.00091 * 11 9 7
37 37 H 0.96700 * 114.00384 * 179.97438 * 12 11 9
38 38 H 1.09004 * 115.54676 * 278.39373 * 13 9 7
39 39 H 1.08996 * 117.49885 * 0.02562 * 14 13 9
40 40 H 1.08998 * 117.49675 * 145.02118 * 14 13 9
41 41 H 1.09005 * 117.50205 * 214.98395 * 15 13 9
42 42 H 1.09003 * 117.49784 * 359.97438 * 15 13 9
43 43 H 1.08994 * 115.54731 * 154.33064 * 16 7 6
44 44 H 1.09001 * 117.49603 * 0.02562 * 17 16 7
45 45 H 1.08997 * 117.50027 * 145.01827 * 17 16 7
46 46 H 1.08998 * 117.49740 * 252.51763 * 18 17 16
47 47 H 1.09000 * 117.51872 * 107.47797 * 18 17 16
48 48 H 1.07997 * 125.99323 * 179.73775 * 19 3 2
49 49 H 1.08994 * 109.47148 * 210.00162 * 22 21 2
50 50 H 1.08997 * 109.46521 * 330.00524 * 22 21 2
51 51 H 0.97005 * 119.99484 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3240 1.1127 0.0000
4 6 1.8857 2.5203 -0.0005
5 8 0.6995 2.7878 -0.0015
6 7 2.7998 3.5108 -0.0010
7 6 2.3643 4.9096 -0.0009
8 1 1.3079 4.9611 -0.2645
9 6 3.1841 5.6990 -1.0234
10 1 2.9235 6.7555 -0.9604
11 6 4.6749 5.5228 -0.7274
12 8 5.4365 6.3510 -1.6081
13 6 2.8790 5.1817 -2.4307
14 6 2.5847 6.2188 -3.5163
15 6 1.4521 5.3574 -2.9540
16 6 2.5724 5.5085 1.3915
17 6 3.3437 4.6703 2.4130
18 6 1.8319 4.8544 2.5598
19 6 3.6590 0.6500 -0.0059
20 7 3.6341 -0.6542 -0.0008
21 7 2.3017 -1.0821 -0.0005
22 6 1.8501 -2.4758 -0.0002
23 6 1.6945 -2.9536 -1.4209
24 1 1.9107 -2.2861 -2.2419
25 6 1.2760 -4.2431 -1.6726
26 7 1.1407 -4.6603 -2.9124
27 14 0.9014 -5.3974 -0.2525
28 1 -0.5295 -5.2711 0.1238
29 1 1.1835 -6.7961 -0.6639
30 1 1.7526 -5.0426 0.9115
31 1 -0.3633 0.0003 -1.0277
32 1 -0.3633 -0.8902 0.5135
33 1 -0.3634 0.8897 0.5142
34 1 3.7461 3.2974 -0.0006
35 1 4.8764 5.8083 0.3051
36 1 4.9542 4.4799 -0.8771
37 1 6.3926 6.2904 -1.4765
38 1 3.4164 4.2809 -2.7272
39 1 2.6088 7.2697 -3.2281
40 1 2.9286 6.0006 -4.5273
41 1 1.0509 4.5725 -3.5952
42 1 0.7306 5.8412 -2.2956
43 1 2.7069 6.5897 1.4228
44 1 3.7031 3.6923 2.0929
45 1 3.9859 5.2000 3.1166
46 1 1.4795 5.5054 3.3599
47 1 1.1962 3.9977 2.3362
48 1 4.5448 1.2677 -0.0114
49 1 2.5851 -3.0957 0.5132
50 1 0.8918 -2.5470 0.5142
51 1 0.8459 -5.5673 -3.0894
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000897902159.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 07:38:06
Heat of formation + Delta-G solvation = 10.494189 kcal
Electronic energy + Delta-G solvation = -31580.699171 eV
Core-core repulsion = 27482.307453 eV
Total energy + Delta-G solvation = -4098.391718 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = -2.76 seconds
Orbital eigenvalues (eV)
-42.37441 -41.08059 -39.09529 -37.83824 -37.02755 -35.79115 -34.88894 -33.95751
-32.86885 -32.03737 -29.65304 -28.32149 -27.06024 -24.99007 -24.31890 -23.61189
-23.16261 -23.11631 -21.56392 -21.13643 -20.65247 -20.16209 -19.29791 -18.73012
-18.01481 -17.03259 -16.87130 -16.70776 -16.55344 -16.32184 -16.01722 -15.91494
-15.47640 -15.19289 -14.80455 -14.58833 -14.42851 -14.36110 -14.13127 -13.91593
-13.79608 -13.71994 -13.39536 -13.14157 -13.00796 -12.78071 -12.57273 -12.39380
-12.33167 -12.22178 -12.16523 -12.00320 -11.86441 -11.73776 -11.24989 -11.12183
-11.03747 -10.92980 -10.74701 -10.72780 -10.55657 -10.27140 -9.99158 -9.43226
-8.44319 -6.56419 0.67423 1.32002 1.32986 1.34378 1.44293 1.62131
2.23506 2.34582 2.58081 2.86003 2.88159 3.03017 3.37376 3.58714
3.70855 3.71563 3.81168 4.07821 4.09665 4.11504 4.16724 4.19227
4.20010 4.29402 4.37714 4.40533 4.47122 4.54148 4.61007 4.68238
4.70995 4.73311 4.80794 4.82789 4.88275 4.94896 5.02457 5.05600
5.07086 5.14301 5.16600 5.16802 5.27026 5.30569 5.36053 5.38242
5.60412 5.69164 5.82744 6.19934 6.46534 6.63993 6.80349 7.02777
7.07538 7.42535 8.72215
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.014469 B = 0.002757 C = 0.002606
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1934.665724 B =10152.121214 C =10740.728015
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.088 4.088
2 C 0.146 3.854
3 C -0.328 4.328
4 C 0.609 3.391
5 O -0.577 6.577
6 N -0.705 5.705
7 C 0.187 3.813
8 H 0.086 0.914
9 C -0.052 4.052
10 H 0.095 0.905
11 C 0.083 3.917
12 O -0.586 6.586
13 C -0.138 4.138
14 C -0.162 4.162
15 C -0.190 4.190
16 C -0.161 4.161
17 C -0.164 4.164
18 C -0.187 4.187
19 C 0.079 3.921
20 N -0.332 5.332
21 N -0.338 5.338
22 C 0.234 3.766
23 C -0.553 4.553
24 H 0.025 0.975
25 C 0.023 3.977
26 N -0.935 5.935
27 Si 0.949 3.051
28 H -0.252 1.252
29 H -0.277 1.277
30 H -0.242 1.242
31 H 0.074 0.926
32 H 0.078 0.922
33 H 0.104 0.896
34 H 0.407 0.593
35 H 0.071 0.929
36 H 0.048 0.952
37 H 0.394 0.606
38 H 0.087 0.913
39 H 0.102 0.898
40 H 0.089 0.911
41 H 0.076 0.924
42 H 0.095 0.905
43 H 0.130 0.870
44 H 0.092 0.908
45 H 0.110 0.890
46 H 0.102 0.898
47 H 0.068 0.932
48 H 0.223 0.777
49 H 0.056 0.944
50 H 0.070 0.930
51 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.513 23.749 10.495 26.769
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.011 3.989
3 C -0.343 4.343
4 C 0.399 3.601
5 O -0.458 6.458
6 N -0.357 5.357
7 C 0.082 3.918
8 H 0.104 0.896
9 C -0.071 4.071
10 H 0.113 0.887
11 C 0.006 3.994
12 O -0.394 6.394
13 C -0.156 4.156
14 C -0.199 4.199
15 C -0.227 4.227
16 C -0.180 4.180
17 C -0.201 4.201
18 C -0.224 4.224
19 C -0.108 4.108
20 N -0.151 5.151
21 N -0.115 5.115
22 C 0.114 3.886
23 C -0.591 4.591
24 H 0.043 0.957
25 C -0.177 4.177
26 N -0.573 5.573
27 Si 0.770 3.230
28 H -0.177 1.177
29 H -0.202 1.202
30 H -0.165 1.165
31 H 0.093 0.907
32 H 0.097 0.903
33 H 0.122 0.878
34 H 0.244 0.756
35 H 0.089 0.911
36 H 0.066 0.934
37 H 0.244 0.756
38 H 0.106 0.894
39 H 0.120 0.880
40 H 0.107 0.893
41 H 0.095 0.905
42 H 0.114 0.886
43 H 0.148 0.852
44 H 0.110 0.890
45 H 0.128 0.872
46 H 0.120 0.880
47 H 0.087 0.913
48 H 0.240 0.760
49 H 0.074 0.926
50 H 0.087 0.913
51 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 5.733 22.703 10.161 25.525
hybrid contribution 0.166 -0.737 -0.207 0.783
sum 5.899 21.966 9.954 24.827
Atomic orbital electron populations
1.20575 0.85900 1.04499 1.03649 1.21959 0.95893 0.86765 0.94287
1.20008 0.93157 0.93347 1.27777 1.17039 0.85207 0.83668 0.74230
1.90682 1.17832 1.84446 1.52817 1.45591 1.09516 1.05064 1.75500
1.20399 0.99550 0.79159 0.92680 0.89610 1.20973 0.94625 1.00047
0.91459 0.88710 1.22163 0.89954 0.93814 0.93494 1.86457 1.23415
1.67819 1.61675 1.22115 0.98268 1.00341 0.94861 1.22939 1.01891
0.96932 0.98149 1.22896 0.92114 1.03324 1.04357 1.22791 1.06030
0.99532 0.89693 1.23015 0.93961 1.01577 1.01582 1.22877 0.95624
1.03050 1.00895 1.24447 0.97647 0.91627 0.97110 1.77086 0.97983
1.14451 1.25626 1.48743 1.03510 1.07253 1.52002 1.19875 0.96743
0.74636 0.97328 1.21183 1.48143 0.98841 0.90949 0.95667 1.25827
0.93624 0.99230 0.99051 1.70030 1.46592 1.19093 1.21606 0.85701
0.80449 0.77812 0.79042 1.17662 1.20240 1.16514 0.90709 0.90286
0.87752 0.75559 0.91134 0.93418 0.75616 0.89442 0.87970 0.89268
0.90534 0.88646 0.85183 0.88965 0.87157 0.87965 0.91345 0.76033
0.92560 0.91267 0.91646
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -3.12 9.57 71.24 0.68 -2.44 16
2 C 0.15 5.76 7.01 42.14 0.30 6.06 16
3 C -0.33 -11.11 6.13 -20.15 -0.12 -11.24 16
4 C 0.61 18.10 7.59 86.66 0.66 18.76 16
5 O -0.58 -20.33 14.06 -4.04 -0.06 -20.39 16
6 N -0.70 -14.28 3.05 -445.80 -1.36 -15.64 16
7 C 0.19 3.35 2.24 44.99 0.10 3.45 16
8 H 0.09 2.05 6.31 -2.39 -0.02 2.04 16
9 C -0.05 -0.81 2.02 -10.79 -0.02 -0.83 16
10 H 0.09 1.40 7.93 -2.39 -0.02 1.38 16
11 C 0.08 0.99 5.88 71.98 0.42 1.41 16
12 O -0.59 -7.76 13.42 -148.98 -2.00 -9.76 16
13 C -0.14 -2.77 4.61 -10.79 -0.05 -2.82 16
14 C -0.16 -3.10 10.18 30.59 0.31 -2.78 16
15 C -0.19 -4.18 9.72 30.59 0.30 -3.88 16
16 C -0.16 -2.31 4.65 -10.79 -0.05 -2.36 16
17 C -0.16 -2.24 9.71 30.59 0.30 -1.95 16
18 C -0.19 -3.35 10.17 30.60 0.31 -3.04 16
19 C 0.08 2.48 11.50 85.65 0.99 3.46 16
20 N -0.33 -13.61 12.50 -56.28 -0.70 -14.32 16
21 N -0.34 -14.81 3.56 -336.70 -1.20 -16.01 16
22 C 0.23 10.84 5.03 85.63 0.43 11.27 16
23 C -0.55 -31.28 9.94 25.60 0.25 -31.03 16
24 H 0.02 1.66 8.06 -2.91 -0.02 1.63 16
25 C 0.02 1.27 5.47 84.66 0.46 1.73 16
26 N -0.94 -56.56 13.96 21.45 0.30 -56.26 16
27 Si 0.95 40.30 27.47 68.60 1.88 42.19 16
28 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16
29 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16
30 H -0.24 -9.37 6.54 99.48 0.65 -8.72 16
31 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16
32 H 0.08 2.58 7.05 -2.39 -0.02 2.56 16
33 H 0.10 3.46 6.50 -2.39 -0.02 3.45 16
34 H 0.41 6.34 5.47 -92.70 -0.51 5.84 16
35 H 0.07 0.60 7.11 -2.39 -0.02 0.58 16
36 H 0.05 0.53 6.74 -2.39 -0.02 0.51 16
37 H 0.39 1.94 9.12 -74.06 -0.68 1.26 16
38 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16
39 H 0.10 1.73 8.07 -2.39 -0.02 1.71 16
40 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16
41 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16
42 H 0.10 2.02 7.85 -2.39 -0.02 2.00 16
43 H 0.13 1.39 8.11 -2.39 -0.02 1.37 16
44 H 0.09 1.38 6.70 -2.39 -0.02 1.36 16
45 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16
46 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16
47 H 0.07 1.69 7.74 -2.39 -0.02 1.67 16
48 H 0.22 4.39 7.50 -2.91 -0.02 4.37 16
49 H 0.06 2.57 7.20 -2.39 -0.02 2.55 16
50 H 0.07 2.88 6.44 -2.39 -0.02 2.86 16
51 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16
Total: -1.00 -74.64 411.24 1.86 -72.79
By element:
Atomic # 1 Polarization: 33.89 SS G_CDS: -0.27 Total: 33.61 kcal
Atomic # 6 Polarization: -21.47 SS G_CDS: 5.26 Total: -16.21 kcal
Atomic # 7 Polarization: -99.27 SS G_CDS: -2.96 Total: -102.23 kcal
Atomic # 8 Polarization: -28.09 SS G_CDS: -2.06 Total: -30.15 kcal
Atomic # 14 Polarization: 40.30 SS G_CDS: 1.88 Total: 42.19 kcal
Total: -74.64 1.86 -72.79 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000897902159.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.281 kcal
(2) G-P(sol) polarization free energy of solvation -74.644 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.637 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.787 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.494 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = -2.76 seconds