Wall clock time and date at job start Wed Apr 1 2020 07:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38044 * 126.29619 * 2 1 4 4 C 1.47429 * 126.40999 * 359.97438 * 3 2 1 5 5 O 1.21603 * 120.00451 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99967 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00198 * 179.97438 * 6 4 3 8 8 H 1.09002 * 109.46653 * 35.00100 * 7 6 4 9 9 C 1.52997 * 109.47035 * 154.99692 * 7 6 4 10 10 H 1.09002 * 109.47067 * 60.00662 * 9 7 6 11 11 C 1.53005 * 109.47511 * 300.00447 * 9 7 6 12 12 O 1.42898 * 109.46919 * 64.99385 * 11 9 7 13 13 C 1.53006 * 109.46983 * 180.02562 * 9 7 6 14 14 C 1.52992 * 117.49797 * 248.74822 * 13 9 7 15 15 C 1.53001 * 117.49685 * 180.08946 * 13 9 7 16 16 C 1.52996 * 109.47477 * 275.00153 * 7 6 4 17 17 C 1.53002 * 117.49888 * 356.25271 * 16 7 6 18 18 C 1.53000 * 117.50107 * 64.91033 * 16 7 6 19 19 C 1.41289 * 107.17410 * 180.24563 * 3 2 1 20 20 N 1.30448 * 108.02164 * 359.61582 * 19 3 2 21 21 N 1.34262 * 126.29283 * 180.02562 * 2 1 3 22 22 C 1.46503 * 125.74745 * 359.96135 * 21 2 1 23 23 C 1.50710 * 109.47132 * 89.99977 * 22 21 2 24 24 H 1.07997 * 119.99637 * 0.02562 * 23 22 21 25 25 C 1.37874 * 120.00072 * 179.97438 * 23 22 21 26 26 N 1.31509 * 120.00066 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00106 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47105 * 59.99675 * 27 25 23 29 29 H 1.48494 * 109.47323 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.46931 * 299.99972 * 27 25 23 31 31 H 1.09003 * 109.47235 * 89.97591 * 1 2 3 32 32 H 1.08994 * 109.47694 * 209.97636 * 1 2 3 33 33 H 1.09007 * 109.47084 * 329.98092 * 1 2 3 34 34 H 0.97000 * 119.99550 * 359.97438 * 6 4 3 35 35 H 1.08993 * 109.47059 * 185.00255 * 11 9 7 36 36 H 1.09001 * 109.46636 * 304.99725 * 11 9 7 37 37 H 0.96702 * 113.99564 * 179.97438 * 12 11 9 38 38 H 1.09000 * 115.54646 * 34.42421 * 13 9 7 39 39 H 1.09005 * 117.50129 * 359.97438 * 14 13 9 40 40 H 1.08998 * 117.49812 * 145.02569 * 14 13 9 41 41 H 1.08997 * 117.50144 * 214.98537 * 15 13 9 42 42 H 1.09004 * 117.49874 * 359.97438 * 15 13 9 43 43 H 1.09002 * 115.54951 * 210.58245 * 16 7 6 44 44 H 1.09000 * 117.49996 * 215.00804 * 17 16 7 45 45 H 1.08999 * 117.49664 * 0.02562 * 17 16 7 46 46 H 1.09008 * 117.49673 * 359.97438 * 18 16 7 47 47 H 1.08999 * 117.49959 * 144.99502 * 18 16 7 48 48 H 1.07998 * 125.99048 * 179.73776 * 19 3 2 49 49 H 1.09001 * 109.47081 * 209.99485 * 22 21 2 50 50 H 1.08998 * 109.47741 * 330.00219 * 22 21 2 51 51 H 0.97002 * 120.00135 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.8000 3.5107 -0.0010 7 6 2.3646 4.9094 -0.0021 8 1 1.4527 5.0064 0.5871 9 6 3.4611 5.7853 0.6073 10 1 4.3730 5.6883 0.0181 11 6 3.7324 5.3367 2.0447 12 8 4.2674 4.0117 2.0371 13 6 3.0060 7.2462 0.6067 14 6 3.7319 8.2118 -0.3320 15 6 3.9711 8.2869 1.1780 16 6 2.0933 5.3581 -1.4394 17 6 2.3944 4.3604 -2.5596 18 6 0.9443 4.6782 -2.1867 19 6 3.6590 0.6498 -0.0058 20 7 3.6340 -0.6545 -0.0007 21 7 2.3017 -1.0822 -0.0005 22 6 1.8499 -2.4758 -0.0003 23 6 1.6942 -2.9536 -1.4212 24 1 1.9106 -2.2861 -2.2421 25 6 1.2766 -4.2432 -1.6729 26 7 1.0146 -5.0566 -0.6733 27 14 1.0844 -4.8357 -3.4340 28 1 2.3902 -4.7382 -4.1344 29 1 0.6264 -6.2483 -3.4339 30 1 0.0831 -3.9913 -4.1338 31 1 -0.3634 0.0004 -1.0277 32 1 -0.3634 -0.8901 0.5134 33 1 -0.3633 0.8899 0.5142 34 1 3.7462 3.2972 -0.0006 35 1 4.4486 6.0152 2.5080 36 1 2.8012 5.3493 2.6111 37 1 4.4643 3.6621 2.9170 38 1 1.9399 7.4065 0.7676 39 1 4.5340 7.8066 -0.9489 40 1 3.1436 9.0078 -0.7884 41 1 3.5400 9.1321 1.7145 42 1 4.9300 7.9308 1.5547 43 1 2.2720 6.4137 -1.6441 44 1 2.7713 4.7596 -3.5013 45 1 2.7854 3.3843 -2.2726 46 1 0.3818 3.9110 -1.6545 47 1 0.3670 5.2866 -2.8830 48 1 4.5449 1.2675 -0.0113 49 1 2.5848 -3.0959 0.5130 50 1 0.8916 -2.5471 0.5140 51 1 0.7205 -5.9638 -0.8504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897902161.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:38:13 Heat of formation + Delta-G solvation = 10.856975 kcal Electronic energy + Delta-G solvation = -31552.217620 eV Core-core repulsion = 27453.841634 eV Total energy + Delta-G solvation = -4098.375986 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 12.20 seconds Orbital eigenvalues (eV) -42.28885 -40.99134 -39.13217 -37.54433 -37.10299 -35.80506 -34.80882 -33.77824 -32.73447 -31.90380 -29.18995 -28.24519 -27.12753 -25.35753 -24.00472 -23.34755 -23.09716 -23.01637 -21.78952 -20.97491 -20.64245 -20.17833 -18.85323 -18.43183 -17.99275 -17.51978 -16.94042 -16.72536 -16.25342 -16.13368 -15.87772 -15.65151 -15.40211 -15.04715 -14.91896 -14.65102 -14.39416 -14.29584 -14.02741 -13.77743 -13.66696 -13.55599 -13.07855 -12.98094 -12.83640 -12.74820 -12.69222 -12.43582 -12.29546 -12.28763 -12.16849 -12.11824 -11.86702 -11.66590 -11.23250 -11.14217 -10.88493 -10.76121 -10.75387 -10.62504 -10.56563 -10.22227 -9.77202 -9.34146 -8.37614 -6.54043 0.75913 1.35686 1.38263 1.41125 1.47572 1.70313 2.31922 2.43666 2.66537 2.87995 2.94177 3.03427 3.48829 3.57918 3.78788 3.84611 3.89081 4.10065 4.15056 4.16546 4.20115 4.22934 4.30610 4.34329 4.44532 4.52740 4.55470 4.63098 4.69179 4.70093 4.76190 4.83102 4.86865 4.88909 4.92682 4.94303 5.07961 5.11772 5.13687 5.16858 5.23022 5.33392 5.36081 5.44906 5.48473 5.49635 5.71731 5.75408 5.82464 6.08714 6.55043 6.80240 6.91511 7.01929 7.16823 7.56496 8.69989 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019380 B = 0.002542 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.471058 B =11011.669343 C =11649.400319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.141 3.859 3 C -0.324 4.324 4 C 0.606 3.394 5 O -0.581 6.581 6 N -0.690 5.690 7 C 0.191 3.809 8 H 0.068 0.932 9 C -0.050 4.050 10 H 0.086 0.914 11 C 0.085 3.915 12 O -0.583 6.583 13 C -0.150 4.150 14 C -0.173 4.173 15 C -0.172 4.172 16 C -0.149 4.149 17 C -0.178 4.178 18 C -0.201 4.201 19 C 0.081 3.919 20 N -0.337 5.337 21 N -0.339 5.339 22 C 0.268 3.732 23 C -0.555 4.555 24 H 0.050 0.950 25 C 0.024 3.976 26 N -0.916 5.916 27 Si 0.970 3.030 28 H -0.273 1.273 29 H -0.272 1.272 30 H -0.267 1.267 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.410 0.590 35 H 0.064 0.936 36 H 0.038 0.962 37 H 0.392 0.608 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.130 0.870 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.218 0.782 49 H 0.030 0.970 50 H 0.049 0.951 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.872 27.713 3.930 28.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.005 3.995 3 C -0.339 4.339 4 C 0.396 3.604 5 O -0.464 6.464 6 N -0.340 5.340 7 C 0.086 3.914 8 H 0.086 0.914 9 C -0.069 4.069 10 H 0.105 0.895 11 C 0.007 3.993 12 O -0.391 6.391 13 C -0.169 4.169 14 C -0.210 4.210 15 C -0.209 4.209 16 C -0.168 4.168 17 C -0.216 4.216 18 C -0.238 4.238 19 C -0.106 4.106 20 N -0.157 5.157 21 N -0.116 5.116 22 C 0.150 3.850 23 C -0.594 4.594 24 H 0.069 0.931 25 C -0.178 4.178 26 N -0.554 5.554 27 Si 0.794 3.206 28 H -0.198 1.198 29 H -0.196 1.196 30 H -0.192 1.192 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.248 0.752 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.242 0.758 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.148 0.852 44 H 0.119 0.881 45 H 0.096 0.904 46 H 0.108 0.892 47 H 0.113 0.887 48 H 0.234 0.766 49 H 0.049 0.951 50 H 0.067 0.933 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.621 26.544 3.377 27.342 hybrid contribution -0.215 -0.444 -0.154 0.517 sum 5.407 26.099 3.223 26.848 Atomic orbital electron populations 1.20509 0.86086 1.03878 1.03663 1.21929 0.95792 0.86798 0.94946 1.20004 0.92985 0.93373 1.27518 1.17029 0.85173 0.83713 0.74519 1.90605 1.17874 1.84499 1.53373 1.45501 1.09755 1.04586 1.74207 1.20363 0.97250 0.79852 0.93886 0.91352 1.20876 0.97880 0.92428 0.95751 0.89536 1.22137 0.97388 0.83904 0.95848 1.86357 1.86041 1.31109 1.35568 1.22003 0.98526 0.89357 1.06981 1.23111 1.03040 1.01719 0.93157 1.23054 1.00674 1.00736 0.96451 1.22861 1.02953 0.98602 0.92403 1.22906 0.98997 1.00274 0.99389 1.23249 0.91932 1.04413 1.04158 1.24363 0.97652 0.91455 0.97080 1.77083 0.98290 1.14403 1.25956 1.49069 1.03380 1.07666 1.51509 1.19331 0.95165 0.72483 0.98059 1.21359 1.47956 0.98469 0.91569 0.93144 1.25723 0.93838 0.95917 1.02274 1.69986 1.44805 1.07581 1.33064 0.85420 0.78824 0.77712 0.78662 1.19822 1.19641 1.19214 0.90253 0.91300 0.87983 0.75195 0.91807 0.94390 0.75834 0.87482 0.88452 0.88042 0.87934 0.88287 0.85223 0.88141 0.90390 0.89171 0.88681 0.76613 0.95146 0.93313 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.18 9.57 71.23 0.68 -2.50 16 2 C 0.14 5.97 7.01 42.14 0.30 6.27 16 3 C -0.32 -11.94 6.13 -20.15 -0.12 -12.06 16 4 C 0.61 19.69 6.50 86.66 0.56 20.26 16 5 O -0.58 -21.48 11.82 -4.04 -0.05 -21.53 16 6 N -0.69 -16.50 2.52 -445.81 -1.12 -17.62 16 7 C 0.19 3.87 1.97 44.99 0.09 3.96 16 8 H 0.07 1.69 7.58 -2.39 -0.02 1.67 16 9 C -0.05 -0.70 2.00 -10.79 -0.02 -0.72 16 10 H 0.09 1.20 7.90 -2.39 -0.02 1.18 16 11 C 0.08 1.11 6.33 71.98 0.46 1.57 16 12 O -0.58 -8.76 11.07 -148.98 -1.65 -10.41 16 13 C -0.15 -1.62 4.05 -10.79 -0.04 -1.67 16 14 C -0.17 -1.56 9.51 30.62 0.29 -1.27 16 15 C -0.17 -1.43 9.68 30.62 0.30 -1.13 16 16 C -0.15 -2.97 5.50 -10.79 -0.06 -3.03 16 17 C -0.18 -4.16 9.69 30.62 0.30 -3.86 16 18 C -0.20 -5.10 9.85 30.62 0.30 -4.80 16 19 C 0.08 2.84 11.50 85.65 0.99 3.83 16 20 N -0.34 -14.97 12.50 -56.28 -0.70 -15.67 16 21 N -0.34 -16.08 3.56 -336.68 -1.20 -17.28 16 22 C 0.27 14.19 5.97 85.64 0.51 14.70 16 23 C -0.56 -31.24 9.39 25.60 0.24 -31.00 16 24 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 25 C 0.02 1.31 5.46 84.65 0.46 1.77 16 26 N -0.92 -51.98 13.29 21.45 0.28 -51.70 16 27 Si 0.97 43.35 29.54 68.60 2.03 45.38 16 28 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 29 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 30 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 31 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 32 H 0.07 2.60 7.05 -2.39 -0.02 2.59 16 33 H 0.10 3.67 6.50 -2.38 -0.02 3.66 16 34 H 0.41 8.81 6.24 -92.71 -0.58 8.23 16 35 H 0.06 0.61 7.13 -2.39 -0.02 0.60 16 36 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.39 3.60 9.12 -74.06 -0.68 2.93 16 38 H 0.11 1.26 8.11 -2.39 -0.02 1.24 16 39 H 0.10 0.88 8.05 -2.38 -0.02 0.86 16 40 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.10 0.75 7.59 -2.38 -0.02 0.73 16 43 H 0.13 2.03 6.54 -2.39 -0.02 2.02 16 44 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.08 2.14 6.41 -2.39 -0.02 2.12 16 46 H 0.09 2.94 5.25 -2.38 -0.01 2.92 16 47 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.22 5.40 7.50 -2.91 -0.02 5.38 16 49 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.05 2.58 7.02 -2.39 -0.02 2.57 16 51 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -68.01 406.80 2.52 -65.49 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: -0.29 Total: 33.03 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 5.22 Total: -9.68 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -2.74 Total: -102.28 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -1.70 Total: -31.94 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -68.01 2.52 -65.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897902161.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.346 kcal (2) G-P(sol) polarization free energy of solvation -68.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.21 seconds