Wall clock time and date at job start Wed Apr 1 2020 07:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38039 * 126.29310 * 2 1 4 4 C 1.47432 * 126.41283 * 359.94502 * 3 2 1 5 5 O 1.21604 * 119.99700 * 320.36081 * 4 3 2 6 6 N 1.34768 * 120.00153 * 140.37374 * 4 3 2 7 7 C 1.46934 * 120.63083 * 174.51728 * 6 4 3 8 8 C 1.53195 * 108.77521 * 126.40656 * 7 6 4 9 9 C 1.53044 * 109.31008 * 54.63444 * 8 7 6 10 10 O 1.42905 * 109.45786 * 178.61120 * 9 8 7 11 11 C 1.42905 * 113.99804 * 210.00131 * 10 9 8 12 12 C 1.53781 * 113.61308 * 249.13512 * 11 10 9 13 13 C 1.53951 * 87.01952 * 220.05226 * 12 11 10 14 14 C 1.53779 * 87.11185 * 25.36316 * 13 12 11 15 15 C 1.53036 * 109.54094 * 298.63242 * 9 8 7 16 16 C 1.46923 * 120.63359 * 354.53401 * 6 4 3 17 17 C 1.41291 * 107.17150 * 180.20200 * 3 2 1 18 18 N 1.30447 * 108.02343 * 359.61502 * 17 3 2 19 19 N 1.34259 * 126.28974 * 179.97438 * 2 1 3 20 20 C 1.46502 * 125.75357 * 0.05160 * 19 2 1 21 21 C 1.50700 * 109.47307 * 89.99743 * 20 19 2 22 22 H 1.07996 * 120.00056 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99849 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00079 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99922 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47210 * 59.99826 * 25 23 21 27 27 H 1.48501 * 109.47173 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47032 * 299.99798 * 25 23 21 29 29 H 1.09005 * 109.46653 * 90.00181 * 1 2 3 30 30 H 1.08998 * 109.47303 * 209.99584 * 1 2 3 31 31 H 1.09001 * 109.47556 * 330.00423 * 1 2 3 32 32 H 1.09002 * 109.58235 * 6.62096 * 7 6 4 33 33 H 1.09000 * 109.58611 * 246.19511 * 7 6 4 34 34 H 1.09001 * 109.49731 * 294.68550 * 8 7 6 35 35 H 1.08994 * 109.49738 * 174.58587 * 8 7 6 36 36 H 1.09004 * 109.45931 * 58.65618 * 9 8 7 37 37 H 1.08993 * 112.84953 * 20.33794 * 11 10 9 38 38 H 1.09003 * 113.61579 * 334.57577 * 12 11 10 39 39 H 1.09003 * 113.60905 * 105.47295 * 12 11 10 40 40 H 1.09007 * 113.53723 * 270.81190 * 13 12 11 41 41 H 1.09002 * 113.66441 * 139.93514 * 13 12 11 42 42 H 1.08997 * 113.61507 * 220.08961 * 14 13 12 43 43 H 1.09005 * 113.68566 * 89.20012 * 14 13 12 44 44 H 1.09005 * 109.50118 * 181.31396 * 15 9 8 45 45 H 1.09000 * 109.50135 * 301.41410 * 15 9 8 46 46 H 1.09000 * 109.58306 * 353.37730 * 16 6 4 47 47 H 1.08997 * 109.58869 * 113.80246 * 16 6 4 48 48 H 1.08002 * 125.98637 * 179.74390 * 17 3 2 49 49 H 1.09005 * 109.46956 * 209.99367 * 20 19 2 50 50 H 1.08998 * 109.47059 * 329.99204 * 20 19 2 51 51 H 0.97008 * 119.99672 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0011 5 8 0.9312 2.8593 -0.6739 6 7 2.5432 3.4313 0.7432 7 6 2.1955 4.8566 0.6612 8 6 1.9095 5.3764 2.0736 9 6 3.1069 5.0724 2.9769 10 8 2.8569 5.5847 4.2874 11 6 4.0358 5.9799 4.9917 12 6 4.3744 5.0707 6.1848 13 6 4.7569 6.3514 6.9489 14 6 3.7952 7.1034 6.0137 15 6 3.3194 3.5588 3.0532 16 6 3.6214 3.0184 1.6518 17 6 3.6590 0.6498 -0.0048 18 7 3.6341 -0.6545 0.0009 19 7 2.3016 -1.0822 0.0005 20 6 1.8500 -2.4758 0.0000 21 6 1.6961 -2.9536 -1.4209 22 1 1.9126 -2.2858 -2.2416 23 6 1.2788 -4.2433 -1.6732 24 7 1.0157 -5.0566 -0.6738 25 14 1.0874 -4.8353 -3.4345 26 1 2.3934 -4.7373 -4.1344 27 1 0.6308 -6.2484 -3.4349 28 1 0.0861 -3.9909 -4.1344 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.3089 4.9812 0.0395 33 1 3.0283 5.4116 0.2293 34 1 1.0210 4.8843 2.4694 35 1 1.7444 6.4532 2.0385 36 1 4.0000 5.5443 2.5671 37 1 4.8819 6.1654 4.3300 38 1 3.5085 4.5560 6.6012 39 1 5.2164 4.4035 6.0001 40 1 5.8011 6.6378 6.8234 41 1 4.4398 6.3498 7.9918 42 1 4.1701 8.0747 5.6912 43 1 2.7702 7.1463 6.3823 44 1 4.1578 3.3419 3.7152 45 1 2.4177 3.0838 3.4397 46 1 3.6756 1.9302 1.6837 47 1 4.5704 3.4234 1.3007 48 1 4.5449 1.2676 -0.0099 49 1 2.5843 -3.0959 0.5143 50 1 0.8910 -2.5471 0.5133 51 1 0.7225 -5.9641 -0.8513 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897987954.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:23:58 Heat of formation + Delta-G solvation = 5.576410 kcal Electronic energy + Delta-G solvation = -30811.592342 eV Core-core repulsion = 26712.987373 eV Total energy + Delta-G solvation = -4098.604969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.95585 -39.99439 -39.14349 -37.39723 -35.57796 -33.92075 -32.32420 -31.87615 -31.32309 -30.83220 -27.48894 -26.72203 -26.02150 -25.55250 -24.39181 -23.76891 -23.06728 -21.88933 -20.70274 -20.02068 -19.54174 -18.39072 -17.55829 -16.94511 -16.76716 -16.02673 -15.80458 -15.37160 -15.17947 -15.04757 -14.73876 -14.55708 -14.26241 -14.01579 -13.85866 -13.35195 -13.13619 -13.03577 -12.80044 -12.75611 -12.48217 -12.36180 -12.32250 -12.10352 -11.82932 -11.74987 -11.64281 -11.50981 -11.50184 -11.39139 -11.10585 -10.87708 -10.83311 -10.78555 -10.58293 -10.35754 -10.26542 -9.93967 -9.63734 -9.40275 -8.70002 -8.64283 -8.56164 -7.87099 -6.32969 -4.40685 2.26226 2.78029 3.02441 3.21207 3.24836 3.28027 3.33721 3.41006 3.70129 4.22827 4.25221 4.25459 4.48512 4.48744 4.52474 4.63458 4.84878 4.88696 4.94007 4.99704 5.06709 5.10425 5.20032 5.26140 5.32596 5.35801 5.42135 5.48630 5.51075 5.53834 5.58458 5.64501 5.65701 5.71459 5.80152 5.86291 5.91506 5.92783 5.95580 6.04522 6.09603 6.38191 6.45075 6.62886 6.79863 6.90174 7.06036 7.15839 7.56342 7.57380 7.77629 7.79426 8.37458 8.52769 8.64932 9.26234 10.75076 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020693 B = 0.002132 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.757698 B =13132.627606 C =13836.020796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.155 3.845 3 C -0.328 4.328 4 C 0.608 3.392 5 O -0.548 6.548 6 N -0.615 5.615 7 C 0.117 3.883 8 C -0.130 4.130 9 C 0.092 3.908 10 O -0.367 6.367 11 C 0.062 3.938 12 C -0.158 4.158 13 C -0.143 4.143 14 C -0.138 4.138 15 C -0.154 4.154 16 C 0.106 3.894 17 C 0.055 3.945 18 N -0.294 5.294 19 N -0.313 5.313 20 C 0.252 3.748 21 C -0.540 4.540 22 H 0.065 0.935 23 C 0.067 3.933 24 N -0.890 5.890 25 Si 0.908 3.092 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.103 0.897 47 H 0.065 0.935 48 H 0.176 0.824 49 H 0.057 0.943 50 H 0.056 0.944 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.228 22.686 12.362 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.018 3.982 3 C -0.343 4.343 4 C 0.399 3.601 5 O -0.426 6.426 6 N -0.350 5.350 7 C -0.006 4.006 8 C -0.169 4.169 9 C 0.034 3.966 10 O -0.286 6.286 11 C 0.004 3.996 12 C -0.196 4.196 13 C -0.181 4.181 14 C -0.175 4.175 15 C -0.193 4.193 16 C -0.017 4.017 17 C -0.131 4.131 18 N -0.115 5.115 19 N -0.090 5.090 20 C 0.135 3.865 21 C -0.578 4.578 22 H 0.083 0.917 23 C -0.137 4.137 24 N -0.528 5.528 25 Si 0.735 3.265 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.198 1.198 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.121 0.879 47 H 0.083 0.917 48 H 0.193 0.807 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.150 21.409 12.125 25.361 hybrid contribution -0.081 0.231 -0.925 0.957 sum 6.069 21.640 11.200 25.111 Atomic orbital electron populations 1.20427 0.87069 1.02912 1.04068 1.21349 0.94732 0.86562 0.95512 1.19608 0.93387 0.92341 1.28980 1.17442 0.80961 0.84054 0.77664 1.90716 1.28017 1.80838 1.42992 1.47908 1.37250 1.06784 1.43042 1.21486 1.02126 0.80717 0.96232 1.22001 0.98496 1.01886 0.94473 1.22186 0.97905 0.93341 0.83178 1.87988 1.30613 1.81922 1.28032 1.23808 0.88230 0.95581 0.91957 1.23536 1.01914 0.97076 0.97066 1.22695 0.99459 0.96850 0.99057 1.23203 1.00821 0.97417 0.96105 1.22458 1.03318 0.96122 0.97398 1.21881 0.89478 1.02281 0.88057 1.23727 0.96155 0.92424 1.00836 1.77144 0.98609 1.12132 1.23590 1.49317 1.02391 1.08206 1.49069 1.19836 0.96340 0.70919 0.99405 1.21218 1.47461 0.98118 0.91034 0.91687 1.24920 0.94440 0.95988 0.98304 1.69906 1.44513 1.07177 1.31174 0.86379 0.78911 0.77711 0.83519 1.19905 1.20888 1.19821 0.89449 0.90635 0.90483 0.88342 0.91754 0.90554 0.90301 0.92141 0.89697 0.89212 0.91288 0.90072 0.90817 0.91172 0.89204 0.90679 0.90538 0.87900 0.91691 0.80686 0.92533 0.92634 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 9.57 36.01 0.34 -1.20 16 2 C 0.15 3.13 7.00 -81.60 -0.57 2.56 16 3 C -0.33 -6.00 5.21 -105.07 -0.55 -6.54 16 4 C 0.61 10.29 7.31 -12.52 -0.09 10.19 16 5 O -0.55 -10.77 15.82 5.27 0.08 -10.69 16 6 N -0.62 -7.89 2.97 -174.03 -0.52 -8.41 16 7 C 0.12 1.24 6.44 -3.70 -0.02 1.22 16 8 C -0.13 -1.22 5.73 -26.61 -0.15 -1.38 16 9 C 0.09 0.81 2.57 -26.69 -0.07 0.75 16 10 O -0.37 -3.59 10.00 -35.23 -0.35 -3.94 16 11 C 0.06 0.47 4.25 -25.92 -0.11 0.36 16 12 C -0.16 -1.12 7.93 -25.83 -0.20 -1.32 16 13 C -0.14 -0.83 8.09 -25.83 -0.21 -1.04 16 14 C -0.14 -0.91 7.91 -25.92 -0.21 -1.11 16 15 C -0.15 -1.47 5.69 -26.61 -0.15 -1.62 16 16 C 0.11 1.11 5.47 -3.71 -0.02 1.09 16 17 C 0.05 0.96 9.62 -16.98 -0.16 0.79 16 18 N -0.29 -6.27 12.50 30.86 0.39 -5.89 16 19 N -0.31 -7.01 3.56 -57.77 -0.21 -7.21 16 20 C 0.25 6.24 5.97 -5.19 -0.03 6.21 16 21 C -0.54 -14.59 9.39 -34.44 -0.32 -14.92 16 22 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 23 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 24 N -0.89 -24.59 13.29 55.43 0.74 -23.85 16 25 Si 0.91 20.96 29.54 -169.99 -5.02 15.93 16 26 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 30 H 0.07 1.30 7.05 -51.93 -0.37 0.94 16 31 H 0.08 1.26 7.72 -51.93 -0.40 0.86 16 32 H 0.10 1.19 7.00 -51.93 -0.36 0.82 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.46 7.42 -51.93 -0.39 0.08 16 37 H 0.09 0.55 7.46 -51.93 -0.39 0.16 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.10 1.23 4.76 -51.93 -0.25 0.98 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.18 2.33 7.33 -52.49 -0.38 1.95 16 49 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 50 H 0.06 1.36 7.02 -51.93 -0.36 1.00 16 51 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 408.47 15.07 6.16 6.16 Total: -1.00 -31.07 408.47 -9.72 -40.80 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -8.36 Total: 1.37 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -2.63 Total: -4.26 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.40 Total: -45.37 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.27 Total: -14.63 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.07 -9.72 -40.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897987954.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.372 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds