Wall clock time and date at job start Wed Apr 1 2020 07:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38039 * 126.29310 * 2 1 4 4 C 1.47432 * 126.41283 * 359.94502 * 3 2 1 5 5 O 1.21604 * 119.99700 * 320.36081 * 4 3 2 6 6 N 1.34768 * 120.00153 * 140.37374 * 4 3 2 7 7 C 1.46934 * 120.63083 * 174.51728 * 6 4 3 8 8 C 1.53195 * 108.77521 * 126.40656 * 7 6 4 9 9 C 1.53044 * 109.31008 * 54.63444 * 8 7 6 10 10 O 1.42905 * 109.45786 * 178.61120 * 9 8 7 11 11 C 1.42905 * 113.99804 * 210.00131 * 10 9 8 12 12 C 1.53781 * 113.61308 * 249.13512 * 11 10 9 13 13 C 1.53951 * 87.01952 * 220.05226 * 12 11 10 14 14 C 1.53779 * 87.11185 * 25.36316 * 13 12 11 15 15 C 1.53036 * 109.54094 * 298.63242 * 9 8 7 16 16 C 1.46923 * 120.63359 * 354.53401 * 6 4 3 17 17 C 1.41291 * 107.17150 * 180.20200 * 3 2 1 18 18 N 1.30447 * 108.02343 * 359.61502 * 17 3 2 19 19 N 1.34259 * 126.28974 * 179.97438 * 2 1 3 20 20 C 1.46502 * 125.75357 * 0.05160 * 19 2 1 21 21 C 1.50700 * 109.47307 * 89.99743 * 20 19 2 22 22 H 1.07996 * 120.00056 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99849 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00079 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99922 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47210 * 59.99826 * 25 23 21 27 27 H 1.48501 * 109.47173 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47032 * 299.99798 * 25 23 21 29 29 H 1.09005 * 109.46653 * 90.00181 * 1 2 3 30 30 H 1.08998 * 109.47303 * 209.99584 * 1 2 3 31 31 H 1.09001 * 109.47556 * 330.00423 * 1 2 3 32 32 H 1.09002 * 109.58235 * 6.62096 * 7 6 4 33 33 H 1.09000 * 109.58611 * 246.19511 * 7 6 4 34 34 H 1.09001 * 109.49731 * 294.68550 * 8 7 6 35 35 H 1.08994 * 109.49738 * 174.58587 * 8 7 6 36 36 H 1.09004 * 109.45931 * 58.65618 * 9 8 7 37 37 H 1.08993 * 112.84953 * 20.33794 * 11 10 9 38 38 H 1.09003 * 113.61579 * 334.57577 * 12 11 10 39 39 H 1.09003 * 113.60905 * 105.47295 * 12 11 10 40 40 H 1.09007 * 113.53723 * 270.81190 * 13 12 11 41 41 H 1.09002 * 113.66441 * 139.93514 * 13 12 11 42 42 H 1.08997 * 113.61507 * 220.08961 * 14 13 12 43 43 H 1.09005 * 113.68566 * 89.20012 * 14 13 12 44 44 H 1.09005 * 109.50118 * 181.31396 * 15 9 8 45 45 H 1.09000 * 109.50135 * 301.41410 * 15 9 8 46 46 H 1.09000 * 109.58306 * 353.37730 * 16 6 4 47 47 H 1.08997 * 109.58869 * 113.80246 * 16 6 4 48 48 H 1.08002 * 125.98637 * 179.74390 * 17 3 2 49 49 H 1.09005 * 109.46956 * 209.99367 * 20 19 2 50 50 H 1.08998 * 109.47059 * 329.99204 * 20 19 2 51 51 H 0.97008 * 119.99672 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0011 5 8 0.9312 2.8593 -0.6739 6 7 2.5432 3.4313 0.7432 7 6 2.1955 4.8566 0.6612 8 6 1.9095 5.3764 2.0736 9 6 3.1069 5.0724 2.9769 10 8 2.8569 5.5847 4.2874 11 6 4.0358 5.9799 4.9917 12 6 4.3744 5.0707 6.1848 13 6 4.7569 6.3514 6.9489 14 6 3.7952 7.1034 6.0137 15 6 3.3194 3.5588 3.0532 16 6 3.6214 3.0184 1.6518 17 6 3.6590 0.6498 -0.0048 18 7 3.6341 -0.6545 0.0009 19 7 2.3016 -1.0822 0.0005 20 6 1.8500 -2.4758 0.0000 21 6 1.6961 -2.9536 -1.4209 22 1 1.9126 -2.2858 -2.2416 23 6 1.2788 -4.2433 -1.6732 24 7 1.0157 -5.0566 -0.6738 25 14 1.0874 -4.8353 -3.4345 26 1 2.3934 -4.7373 -4.1344 27 1 0.6308 -6.2484 -3.4349 28 1 0.0861 -3.9909 -4.1344 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.3089 4.9812 0.0395 33 1 3.0283 5.4116 0.2293 34 1 1.0210 4.8843 2.4694 35 1 1.7444 6.4532 2.0385 36 1 4.0000 5.5443 2.5671 37 1 4.8819 6.1654 4.3300 38 1 3.5085 4.5560 6.6012 39 1 5.2164 4.4035 6.0001 40 1 5.8011 6.6378 6.8234 41 1 4.4398 6.3498 7.9918 42 1 4.1701 8.0747 5.6912 43 1 2.7702 7.1463 6.3823 44 1 4.1578 3.3419 3.7152 45 1 2.4177 3.0838 3.4397 46 1 3.6756 1.9302 1.6837 47 1 4.5704 3.4234 1.3007 48 1 4.5449 1.2676 -0.0099 49 1 2.5843 -3.0959 0.5143 50 1 0.8910 -2.5471 0.5133 51 1 0.7225 -5.9641 -0.8513 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897987954.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:23:56 Heat of formation + Delta-G solvation = -12.025721 kcal Electronic energy + Delta-G solvation = -30812.355628 eV Core-core repulsion = 26712.987373 eV Total energy + Delta-G solvation = -4099.368254 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -42.42033 -40.90079 -40.04247 -38.33271 -36.44021 -35.80845 -33.95393 -33.13625 -32.41209 -32.01318 -29.20036 -28.27607 -26.55092 -26.35980 -25.45075 -25.12414 -24.15331 -23.05948 -21.78464 -21.09732 -20.43730 -19.66511 -18.85537 -18.45599 -17.96145 -17.19109 -16.86951 -16.43334 -16.34906 -16.33211 -15.82550 -15.70893 -15.39817 -15.22053 -14.84413 -14.71770 -14.37554 -14.07818 -13.99569 -13.81808 -13.65494 -13.59003 -13.35961 -13.31680 -13.20524 -13.07237 -12.92840 -12.70654 -12.53233 -12.30243 -12.28378 -12.22585 -12.08347 -11.86845 -11.80149 -11.45443 -11.38493 -11.17463 -10.82610 -10.76237 -10.30939 -10.19544 -9.72733 -9.37328 -8.38110 -6.54300 0.74511 1.32585 1.37880 1.38376 1.47022 1.65816 2.01551 2.31485 2.32882 2.75345 2.93798 3.58828 3.69568 3.71714 3.74298 3.83140 3.89394 4.00160 4.00869 4.08964 4.12141 4.15302 4.21913 4.33370 4.40506 4.46581 4.49084 4.55581 4.66165 4.74245 4.77610 4.84830 4.86849 4.87783 4.89171 4.90964 4.94891 5.03084 5.07223 5.08100 5.13929 5.15444 5.26821 5.30266 5.47334 5.48599 5.59597 5.71163 5.74999 6.04812 6.40153 6.45440 6.54447 6.83225 7.16569 7.25024 8.69243 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020693 B = 0.002132 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.757698 B =13132.627606 C =13836.020796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.135 3.865 3 C -0.325 4.325 4 C 0.606 3.394 5 O -0.582 6.582 6 N -0.605 5.605 7 C 0.116 3.884 8 C -0.124 4.124 9 C 0.094 3.906 10 O -0.386 6.386 11 C 0.056 3.944 12 C -0.163 4.163 13 C -0.136 4.136 14 C -0.139 4.139 15 C -0.148 4.148 16 C 0.104 3.896 17 C 0.078 3.922 18 N -0.332 5.332 19 N -0.336 5.336 20 C 0.269 3.731 21 C -0.556 4.556 22 H 0.049 0.951 23 C 0.025 3.975 24 N -0.915 5.915 25 Si 0.969 3.031 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.268 1.268 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.049 0.951 46 H 0.087 0.913 47 H 0.102 0.898 48 H 0.221 0.779 49 H 0.033 0.967 50 H 0.051 0.949 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.070 24.952 12.223 28.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.000 4.000 3 C -0.340 4.340 4 C 0.396 3.604 5 O -0.463 6.463 6 N -0.338 5.338 7 C -0.006 4.006 8 C -0.162 4.162 9 C 0.037 3.963 10 O -0.306 6.306 11 C -0.002 4.002 12 C -0.201 4.201 13 C -0.174 4.174 14 C -0.177 4.177 15 C -0.187 4.187 16 C -0.019 4.019 17 C -0.108 4.108 18 N -0.152 5.152 19 N -0.114 5.114 20 C 0.150 3.850 21 C -0.594 4.594 22 H 0.068 0.932 23 C -0.177 4.177 24 N -0.553 5.553 25 Si 0.793 3.207 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.193 1.193 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.068 0.932 46 H 0.105 0.895 47 H 0.120 0.880 48 H 0.237 0.763 49 H 0.051 0.949 50 H 0.069 0.931 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.011 23.711 12.028 27.768 hybrid contribution -0.604 -0.328 -0.774 1.035 sum 7.407 23.383 11.254 26.986 Atomic orbital electron populations 1.20415 0.86120 1.03524 1.03835 1.21832 0.95726 0.86729 0.95692 1.19880 0.93557 0.92876 1.27678 1.17284 0.80995 0.83942 0.78171 1.90702 1.29517 1.81225 1.44871 1.47953 1.36794 1.07217 1.41818 1.21664 1.02665 0.79364 0.96864 1.21927 0.97961 1.02594 0.93741 1.22183 0.98362 0.92759 0.83033 1.87981 1.32101 1.82021 1.28466 1.24048 0.88102 0.95841 0.92182 1.23535 1.01540 0.97643 0.97383 1.22704 1.00093 0.95669 0.98893 1.23205 1.00453 0.97938 0.96106 1.22393 1.02732 0.96653 0.96911 1.22071 0.90050 1.01622 0.88128 1.24394 0.97252 0.91408 0.97711 1.77093 0.98310 1.14146 1.25680 1.49041 1.03262 1.07637 1.51443 1.19350 0.95310 0.72346 0.97996 1.21362 1.47992 0.98438 0.91648 0.93224 1.25706 0.93850 0.95944 1.02205 1.69985 1.44783 1.07561 1.32994 0.85431 0.78797 0.77695 0.78755 1.19874 1.19646 1.19303 0.90020 0.90638 0.89157 0.90111 0.88615 0.92972 0.88555 0.89601 0.87865 0.90869 0.90645 0.88584 0.90690 0.89962 0.90437 0.89101 0.93176 0.89479 0.88041 0.76274 0.94920 0.93140 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.98 9.57 71.24 0.68 -2.30 16 2 C 0.14 5.59 7.00 42.14 0.29 5.88 16 3 C -0.32 -11.73 5.21 -20.15 -0.10 -11.84 16 4 C 0.61 19.99 7.31 86.67 0.63 20.62 16 5 O -0.58 -22.85 15.82 -4.04 -0.06 -22.91 16 6 N -0.61 -14.27 2.97 -822.76 -2.45 -16.71 16 7 C 0.12 2.18 6.44 86.36 0.56 2.74 16 8 C -0.12 -2.08 5.73 30.67 0.18 -1.90 16 9 C 0.09 1.40 2.57 30.62 0.08 1.48 16 10 O -0.39 -6.80 10.00 -148.98 -1.49 -8.29 16 11 C 0.06 0.70 4.25 31.12 0.13 0.83 16 12 C -0.16 -2.02 7.93 31.18 0.25 -1.78 16 13 C -0.14 -1.29 8.09 31.18 0.25 -1.03 16 14 C -0.14 -1.56 7.91 31.12 0.25 -1.31 16 15 C -0.15 -2.49 5.69 30.67 0.17 -2.32 16 16 C 0.10 1.85 5.47 86.36 0.47 2.32 16 17 C 0.08 2.63 9.62 85.65 0.82 3.46 16 18 N -0.33 -14.23 12.50 -56.27 -0.70 -14.93 16 19 N -0.34 -15.53 3.56 -336.69 -1.20 -16.73 16 20 C 0.27 13.87 5.97 85.63 0.51 14.39 16 21 C -0.56 -30.93 9.39 25.60 0.24 -30.69 16 22 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 23 C 0.02 1.33 5.46 84.65 0.46 1.79 16 24 N -0.92 -51.31 13.29 21.45 0.28 -51.03 16 25 Si 0.97 43.11 29.54 68.60 2.03 45.13 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 29 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 30 H 0.07 2.72 7.05 -2.39 -0.02 2.71 16 31 H 0.09 3.02 7.72 -2.39 -0.02 3.00 16 32 H 0.08 1.86 7.00 -2.39 -0.02 1.84 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 0.89 7.42 -2.38 -0.02 0.87 16 37 H 0.10 0.91 7.46 -2.39 -0.02 0.89 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 45 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.09 1.87 4.76 -2.39 -0.01 1.86 16 47 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.22 5.08 7.33 -2.91 -0.02 5.06 16 49 H 0.03 1.81 8.14 -2.38 -0.02 1.79 16 50 H 0.05 2.60 7.02 -2.39 -0.02 2.59 16 51 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 Total: -1.00 -69.25 408.47 3.21 -66.04 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.92 Total: 19.10 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 5.88 Total: 0.34 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -4.06 Total: -99.40 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -1.55 Total: -31.21 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -69.25 3.21 -66.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897987954.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.013 kcal (2) G-P(sol) polarization free energy of solvation -69.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds