Wall clock time and date at job start Wed Apr 1 2020 07:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38039 * 126.29302 * 2 1 4 4 C 1.47429 * 126.41402 * 0.02562 * 3 2 1 5 5 O 1.21603 * 119.99837 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00109 * 179.97438 * 4 3 2 7 7 C 1.47060 * 136.05778 * 359.62463 * 6 4 3 8 8 C 1.53756 * 87.88972 * 152.96576 * 7 6 4 9 9 C 1.53004 * 114.08862 * 139.77966 * 8 7 6 10 10 C 1.53003 * 109.47088 * 91.56429 * 9 8 7 11 11 C 1.53182 * 109.54128 * 294.55707 * 10 9 8 12 12 C 1.53092 * 109.16278 * 183.15440 * 11 10 9 13 13 O 1.42905 * 109.41640 * 57.60712 * 12 11 10 14 14 C 1.42903 * 114.09618 * 298.84395 * 13 12 11 15 15 C 1.53093 * 109.41740 * 61.15739 * 14 13 12 16 16 C 1.47069 * 136.05603 * 180.02562 * 6 4 3 17 17 C 1.41289 * 107.17227 * 179.90590 * 3 2 1 18 18 N 1.30449 * 108.02172 * 0.36634 * 17 3 2 19 19 N 1.34255 * 126.29135 * 180.31716 * 2 1 3 20 20 C 1.46504 * 125.75251 * 359.97438 * 19 2 1 21 21 C 1.50697 * 109.47391 * 90.00455 * 20 19 2 22 22 H 1.08005 * 119.99554 * 359.97438 * 21 20 19 23 23 C 1.37873 * 120.00346 * 179.97438 * 21 20 19 24 24 N 1.31513 * 119.99952 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00030 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46788 * 60.00345 * 25 23 21 27 27 H 1.48500 * 109.47068 * 180.02562 * 25 23 21 28 28 H 1.48493 * 109.47002 * 300.00351 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.70923 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.71024 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.71004 * 1 2 3 32 32 H 1.09003 * 113.47333 * 267.70124 * 7 6 4 33 33 H 1.08997 * 113.46811 * 38.13615 * 7 6 4 34 34 H 1.09000 * 114.57548 * 272.66323 * 8 7 6 35 35 H 1.08993 * 109.47358 * 211.56291 * 9 8 7 36 36 H 1.09002 * 109.47297 * 331.56775 * 9 8 7 37 37 H 1.08997 * 109.54159 * 54.82025 * 10 9 8 38 38 H 1.09008 * 109.52192 * 303.05917 * 11 10 9 39 39 H 1.09000 * 109.52655 * 63.24249 * 11 10 9 40 40 H 1.08996 * 109.47912 * 297.62407 * 12 11 10 41 41 H 1.09001 * 109.47882 * 177.59250 * 12 11 10 42 42 H 1.08997 * 109.48024 * 301.17731 * 14 13 12 43 43 H 1.09001 * 109.48645 * 181.14786 * 14 13 12 44 44 H 1.08992 * 109.52433 * 182.48611 * 15 14 13 45 45 H 1.08999 * 109.51989 * 62.29142 * 15 14 13 46 46 H 1.08997 * 113.46995 * 321.86091 * 16 6 4 47 47 H 1.08999 * 113.46908 * 92.30069 * 16 6 4 48 48 H 1.07999 * 125.98857 * 180.11575 * 17 3 2 49 49 H 1.09004 * 109.46833 * 209.99868 * 20 19 2 50 50 H 1.08996 * 109.47495 * 329.99908 * 20 19 2 51 51 H 0.97002 * 120.00041 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 0.0005 5 8 0.6996 2.7877 0.0006 6 7 2.8000 3.5106 0.0010 7 6 4.2680 3.5966 0.0078 8 6 4.1349 4.9568 -0.6967 9 6 5.1150 6.0189 -0.1943 10 6 6.3879 5.9801 -1.0424 11 6 7.1073 4.6451 -0.8260 12 6 8.4183 4.6469 -1.6165 13 8 9.2230 5.7518 -1.1994 14 6 8.6210 7.0286 -1.4213 15 6 7.3180 7.1226 -0.6230 16 6 2.7682 4.9810 0.0020 17 6 3.6590 0.6498 0.0022 18 7 3.6340 -0.6544 -0.0045 19 7 2.3017 -1.0821 -0.0060 20 6 1.8500 -2.4758 -0.0132 21 6 1.6947 -2.9462 -1.4364 22 1 1.9105 -2.2741 -2.2538 23 6 1.2773 -4.2345 -1.6950 24 7 1.0141 -5.0528 -0.6996 25 14 1.0841 -4.8174 -3.4592 26 1 2.3896 -4.7159 -4.1597 27 1 0.6264 -6.2301 -3.4665 28 1 0.0824 -3.9694 -4.1538 29 1 -0.3633 -0.0052 1.0277 30 1 -0.3633 -0.8874 -0.5183 31 1 -0.3633 0.8926 -0.5093 32 1 4.6942 3.6661 1.0086 33 1 4.7503 2.8345 -0.6042 34 1 4.0804 4.9007 -1.7839 35 1 4.6554 7.0040 -0.2738 36 1 5.3661 5.8180 0.8472 37 1 6.1280 6.0893 -2.0953 38 1 7.3216 4.5146 0.2348 39 1 6.4735 3.8292 -1.1735 40 1 8.2010 4.7368 -2.6807 41 1 8.9551 3.7162 -1.4322 42 1 8.4062 7.1497 -2.4830 43 1 9.3037 7.8139 -1.0966 44 1 6.8350 8.0784 -0.8254 45 1 7.5366 7.0420 0.4418 46 1 1.9725 5.3984 -0.6149 47 1 2.7992 5.4151 1.0013 48 1 4.5449 1.2676 0.0046 49 1 2.5849 -3.0985 0.4971 50 1 0.8916 -2.5498 0.5006 51 1 0.7207 -5.9593 -0.8815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899214882.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:23:12 Heat of formation + Delta-G solvation = 9.151233 kcal Electronic energy + Delta-G solvation = -30506.250763 eV Core-core repulsion = 26407.800810 eV Total energy + Delta-G solvation = -4098.449953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.98142 -40.32224 -39.41680 -37.51281 -35.14600 -33.90205 -32.16232 -31.49938 -31.24916 -30.64742 -28.13166 -27.05999 -26.42805 -26.03551 -23.91599 -23.71054 -23.23178 -21.67184 -20.51326 -20.35079 -19.49933 -18.46153 -16.96223 -16.72804 -16.60915 -16.33796 -15.89712 -15.73171 -15.16577 -15.10319 -14.93569 -14.63073 -14.54682 -14.10465 -13.88385 -13.61904 -13.17842 -13.06373 -12.82062 -12.71626 -12.55974 -12.48818 -12.21363 -12.08120 -12.00218 -11.81087 -11.66581 -11.57087 -11.46759 -11.20479 -11.13929 -10.89082 -10.79046 -10.71432 -10.44894 -10.36562 -10.15214 -9.96188 -9.80645 -9.37233 -8.71574 -8.67051 -8.56719 -7.90413 -6.34161 -4.42315 2.17184 2.79141 2.90641 3.19453 3.23443 3.26237 3.41920 3.55708 3.86255 3.97162 4.23604 4.27327 4.33208 4.48904 4.65209 4.68318 4.78025 4.88254 4.98316 5.01722 5.08167 5.09257 5.14040 5.15660 5.27771 5.30192 5.31425 5.35683 5.38795 5.46215 5.53582 5.57253 5.58965 5.63522 5.71659 5.77084 5.78739 5.83943 5.98696 6.08111 6.09274 6.13714 6.50808 6.60905 6.79056 6.86778 6.89494 7.16523 7.55293 7.76511 7.78330 7.90148 8.36385 8.57814 8.63594 9.24618 10.73930 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013728 B = 0.002240 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.120203 B =12497.173411 C =13822.598871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.165 3.835 3 C -0.327 4.327 4 C 0.632 3.368 5 O -0.554 6.554 6 N -0.648 5.648 7 C 0.102 3.898 8 C -0.125 4.125 9 C -0.101 4.101 10 C -0.088 4.088 11 C -0.155 4.155 12 C 0.058 3.942 13 O -0.385 6.385 14 C 0.060 3.940 15 C -0.151 4.151 16 C 0.111 3.889 17 C 0.053 3.947 18 N -0.296 5.296 19 N -0.313 5.313 20 C 0.251 3.749 21 C -0.541 4.541 22 H 0.065 0.935 23 C 0.068 3.932 24 N -0.889 5.889 25 Si 0.908 3.092 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.273 1.273 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.176 0.824 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.942 24.299 0.852 26.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.028 3.972 3 C -0.342 4.342 4 C 0.426 3.574 5 O -0.433 6.433 6 N -0.384 5.384 7 C -0.022 4.022 8 C -0.144 4.144 9 C -0.139 4.139 10 C -0.107 4.107 11 C -0.193 4.193 12 C -0.018 4.018 13 O -0.304 6.304 14 C -0.017 4.017 15 C -0.189 4.189 16 C -0.012 4.012 17 C -0.133 4.133 18 N -0.116 5.116 19 N -0.090 5.090 20 C 0.134 3.866 21 C -0.580 4.580 22 H 0.083 0.917 23 C -0.136 4.136 24 N -0.527 5.527 25 Si 0.735 3.265 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.198 1.198 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.123 0.877 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.067 0.933 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.097 0.903 48 H 0.193 0.807 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.924 22.740 0.988 25.247 hybrid contribution -0.719 0.251 -0.959 1.225 sum 10.205 22.990 0.028 25.153 Atomic orbital electron populations 1.20619 0.86823 1.04874 1.03275 1.21459 0.94957 0.86473 0.94341 1.19569 0.93212 0.92040 1.29390 1.16851 0.83612 0.82825 0.74075 1.90698 1.16086 1.83981 1.52575 1.49239 1.07318 1.06316 1.75535 1.23325 0.81991 0.96496 1.00374 1.23121 0.95238 0.95230 1.00807 1.21538 0.94089 0.98613 0.99660 1.21218 0.94570 0.94739 1.00169 1.22353 0.96987 0.98002 1.01910 1.22620 0.91934 0.89853 0.97427 1.87942 1.43659 1.14173 1.84610 1.22566 0.94649 0.85882 0.98629 1.22252 0.96286 0.98966 1.01411 1.22904 0.96847 0.81238 1.00207 1.23965 0.96552 0.92526 1.00275 1.77139 0.98655 1.12273 1.23542 1.49375 1.02482 1.08282 1.48884 1.19850 0.96418 0.70886 0.99420 1.21211 1.47614 0.98167 0.90966 0.91723 1.24924 0.94429 0.95951 0.98334 1.69904 1.44372 1.07066 1.31315 0.86377 0.78888 0.77742 0.83504 1.19892 1.20851 1.19841 0.90510 0.89825 0.88662 0.89811 0.90164 0.87739 0.91060 0.91146 0.90889 0.90772 0.90221 0.93246 0.88754 0.93336 0.89110 0.90913 0.90931 0.90669 0.90250 0.80683 0.92489 0.92558 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 9.35 36.01 0.34 -1.49 16 2 C 0.17 3.46 7.01 -81.60 -0.57 2.89 16 3 C -0.33 -6.27 6.13 -105.07 -0.64 -6.92 16 4 C 0.63 11.30 8.06 -12.52 -0.10 11.20 16 5 O -0.55 -11.31 15.61 5.27 0.08 -11.22 16 6 N -0.65 -8.61 3.69 -186.33 -0.69 -9.30 16 7 C 0.10 0.92 5.39 -8.38 -0.05 0.88 16 8 C -0.12 -0.89 3.55 -89.96 -0.32 -1.21 16 9 C -0.10 -0.52 4.64 -26.73 -0.12 -0.65 16 10 C -0.09 -0.48 2.26 -90.43 -0.20 -0.68 16 11 C -0.15 -0.96 4.81 -26.59 -0.13 -1.09 16 12 C 0.06 0.41 6.84 37.20 0.25 0.67 16 13 O -0.39 -3.36 10.77 -35.23 -0.38 -3.74 16 14 C 0.06 0.37 6.84 37.21 0.25 0.62 16 15 C -0.15 -0.79 5.42 -26.59 -0.14 -0.93 16 16 C 0.11 1.07 8.19 -8.50 -0.07 1.00 16 17 C 0.05 0.97 11.14 -16.98 -0.19 0.78 16 18 N -0.30 -6.48 12.50 30.86 0.39 -6.10 16 19 N -0.31 -7.21 3.56 -57.77 -0.21 -7.41 16 20 C 0.25 6.31 5.78 -5.19 -0.03 6.28 16 21 C -0.54 -14.64 9.39 -34.44 -0.32 -14.96 16 22 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 23 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 24 N -0.89 -24.63 13.29 55.43 0.74 -23.89 16 25 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.60 7.70 -51.93 -0.40 1.20 16 31 H 0.09 1.76 6.49 -51.93 -0.34 1.42 16 32 H 0.08 0.65 7.87 -51.93 -0.41 0.25 16 33 H 0.08 0.72 5.38 -51.93 -0.28 0.45 16 34 H 0.10 0.78 8.12 -51.93 -0.42 0.35 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.36 7.80 -51.93 -0.40 -0.04 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.08 0.48 6.03 -51.93 -0.31 0.17 16 40 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 48 H 0.18 2.40 5.20 -52.49 -0.27 2.13 16 49 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 50 H 0.06 1.40 7.62 -51.93 -0.40 1.01 16 51 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 404.65 15.07 6.10 6.10 Total: -1.00 -32.46 404.65 -9.41 -41.87 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.27 Total: -0.24 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.15 Total: -1.89 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.23 Total: -46.70 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.30 Total: -14.97 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.46 -9.41 -41.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899214882.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.021 kcal (2) G-P(sol) polarization free energy of solvation -32.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds