Wall clock time and date at job start Wed Apr 1 2020 07:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38039 * 126.29302 * 2 1 4 4 C 1.47429 * 126.41402 * 0.02562 * 3 2 1 5 5 O 1.21603 * 119.99837 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00109 * 179.97438 * 4 3 2 7 7 C 1.47060 * 136.05778 * 359.62463 * 6 4 3 8 8 C 1.53756 * 87.88972 * 152.96576 * 7 6 4 9 9 C 1.53004 * 114.08862 * 139.77966 * 8 7 6 10 10 C 1.53003 * 109.47088 * 91.56429 * 9 8 7 11 11 C 1.53182 * 109.54128 * 294.55707 * 10 9 8 12 12 C 1.53092 * 109.16278 * 183.15440 * 11 10 9 13 13 O 1.42905 * 109.41640 * 57.60712 * 12 11 10 14 14 C 1.42903 * 114.09618 * 298.84395 * 13 12 11 15 15 C 1.53093 * 109.41740 * 61.15739 * 14 13 12 16 16 C 1.47069 * 136.05603 * 180.02562 * 6 4 3 17 17 C 1.41289 * 107.17227 * 179.90590 * 3 2 1 18 18 N 1.30449 * 108.02172 * 0.36634 * 17 3 2 19 19 N 1.34255 * 126.29135 * 180.31716 * 2 1 3 20 20 C 1.46504 * 125.75251 * 359.97438 * 19 2 1 21 21 C 1.50697 * 109.47391 * 90.00455 * 20 19 2 22 22 H 1.08005 * 119.99554 * 359.97438 * 21 20 19 23 23 C 1.37873 * 120.00346 * 179.97438 * 21 20 19 24 24 N 1.31513 * 119.99952 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00030 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46788 * 60.00345 * 25 23 21 27 27 H 1.48500 * 109.47068 * 180.02562 * 25 23 21 28 28 H 1.48493 * 109.47002 * 300.00351 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.70923 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.71024 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.71004 * 1 2 3 32 32 H 1.09003 * 113.47333 * 267.70124 * 7 6 4 33 33 H 1.08997 * 113.46811 * 38.13615 * 7 6 4 34 34 H 1.09000 * 114.57548 * 272.66323 * 8 7 6 35 35 H 1.08993 * 109.47358 * 211.56291 * 9 8 7 36 36 H 1.09002 * 109.47297 * 331.56775 * 9 8 7 37 37 H 1.08997 * 109.54159 * 54.82025 * 10 9 8 38 38 H 1.09008 * 109.52192 * 303.05917 * 11 10 9 39 39 H 1.09000 * 109.52655 * 63.24249 * 11 10 9 40 40 H 1.08996 * 109.47912 * 297.62407 * 12 11 10 41 41 H 1.09001 * 109.47882 * 177.59250 * 12 11 10 42 42 H 1.08997 * 109.48024 * 301.17731 * 14 13 12 43 43 H 1.09001 * 109.48645 * 181.14786 * 14 13 12 44 44 H 1.08992 * 109.52433 * 182.48611 * 15 14 13 45 45 H 1.08999 * 109.51989 * 62.29142 * 15 14 13 46 46 H 1.08997 * 113.46995 * 321.86091 * 16 6 4 47 47 H 1.08999 * 113.46908 * 92.30069 * 16 6 4 48 48 H 1.07999 * 125.98857 * 180.11575 * 17 3 2 49 49 H 1.09004 * 109.46833 * 209.99868 * 20 19 2 50 50 H 1.08996 * 109.47495 * 329.99908 * 20 19 2 51 51 H 0.97002 * 120.00041 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 0.0005 5 8 0.6996 2.7877 0.0006 6 7 2.8000 3.5106 0.0010 7 6 4.2680 3.5966 0.0078 8 6 4.1349 4.9568 -0.6967 9 6 5.1150 6.0189 -0.1943 10 6 6.3879 5.9801 -1.0424 11 6 7.1073 4.6451 -0.8260 12 6 8.4183 4.6469 -1.6165 13 8 9.2230 5.7518 -1.1994 14 6 8.6210 7.0286 -1.4213 15 6 7.3180 7.1226 -0.6230 16 6 2.7682 4.9810 0.0020 17 6 3.6590 0.6498 0.0022 18 7 3.6340 -0.6544 -0.0045 19 7 2.3017 -1.0821 -0.0060 20 6 1.8500 -2.4758 -0.0132 21 6 1.6947 -2.9462 -1.4364 22 1 1.9105 -2.2741 -2.2538 23 6 1.2773 -4.2345 -1.6950 24 7 1.0141 -5.0528 -0.6996 25 14 1.0841 -4.8174 -3.4592 26 1 2.3896 -4.7159 -4.1597 27 1 0.6264 -6.2301 -3.4665 28 1 0.0824 -3.9694 -4.1538 29 1 -0.3633 -0.0052 1.0277 30 1 -0.3633 -0.8874 -0.5183 31 1 -0.3633 0.8926 -0.5093 32 1 4.6942 3.6661 1.0086 33 1 4.7503 2.8345 -0.6042 34 1 4.0804 4.9007 -1.7839 35 1 4.6554 7.0040 -0.2738 36 1 5.3661 5.8180 0.8472 37 1 6.1280 6.0893 -2.0953 38 1 7.3216 4.5146 0.2348 39 1 6.4735 3.8292 -1.1735 40 1 8.2010 4.7368 -2.6807 41 1 8.9551 3.7162 -1.4322 42 1 8.4062 7.1497 -2.4830 43 1 9.3037 7.8139 -1.0966 44 1 6.8350 8.0784 -0.8254 45 1 7.5366 7.0420 0.4418 46 1 1.9725 5.3984 -0.6149 47 1 2.7992 5.4151 1.0013 48 1 4.5449 1.2676 0.0046 49 1 2.5849 -3.0985 0.4971 50 1 0.8916 -2.5498 0.5006 51 1 0.7207 -5.9593 -0.8815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899214882.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:23:10 Heat of formation + Delta-G solvation = -10.626788 kcal Electronic energy + Delta-G solvation = -30507.108402 eV Core-core repulsion = 26407.800810 eV Total energy + Delta-G solvation = -4099.307592 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.40236 -41.26924 -40.08784 -38.73128 -35.86254 -35.70482 -33.92257 -32.80484 -31.97814 -31.59104 -29.44768 -28.55130 -27.58468 -26.98752 -25.30893 -24.44829 -24.18214 -22.89261 -21.37955 -21.01618 -20.73137 -19.75052 -18.87477 -18.15016 -17.28642 -16.95195 -16.90047 -16.74552 -16.66890 -16.19420 -16.11062 -15.73598 -15.44907 -15.06315 -14.96801 -14.74558 -14.34193 -14.24964 -14.12380 -13.81564 -13.68353 -13.64335 -13.53085 -13.16135 -13.12803 -12.99736 -12.77877 -12.71103 -12.67189 -12.32112 -12.22551 -12.11287 -11.89995 -11.75551 -11.64192 -11.37828 -11.22560 -10.98570 -10.77569 -10.73046 -10.30144 -10.29897 -9.81764 -9.37399 -8.39302 -6.56074 0.63095 1.27868 1.37035 1.37909 1.46157 1.59126 2.01655 2.31298 2.48838 2.92611 3.07837 3.31658 3.54851 3.69942 3.78981 3.87775 3.98626 4.03803 4.14400 4.17574 4.20965 4.30529 4.35589 4.41158 4.53503 4.58113 4.61367 4.62081 4.64607 4.66317 4.72761 4.77278 4.84773 4.89116 4.90211 4.96974 5.01771 5.04933 5.10058 5.11035 5.20001 5.22318 5.32399 5.36288 5.45663 5.46947 5.62771 5.64210 5.72739 6.01173 6.37906 6.52375 6.75151 6.79011 7.14968 7.27008 8.68399 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013728 B = 0.002240 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.120203 B =12497.173411 C =13822.598871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.145 3.855 3 C -0.327 4.327 4 C 0.626 3.374 5 O -0.590 6.590 6 N -0.653 5.653 7 C 0.093 3.907 8 C -0.100 4.100 9 C -0.092 4.092 10 C -0.086 4.086 11 C -0.153 4.153 12 C 0.053 3.947 13 O -0.410 6.410 14 C 0.052 3.948 15 C -0.147 4.147 16 C 0.105 3.895 17 C 0.075 3.925 18 N -0.334 5.334 19 N -0.336 5.336 20 C 0.268 3.732 21 C -0.557 4.557 22 H 0.051 0.949 23 C 0.024 3.976 24 N -0.916 5.916 25 Si 0.971 3.029 26 H -0.272 1.272 27 H -0.272 1.272 28 H -0.267 1.267 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.092 0.908 42 H 0.053 0.947 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.099 0.901 48 H 0.220 0.780 49 H 0.033 0.967 50 H 0.050 0.950 51 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.862 26.573 0.309 29.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.009 3.991 3 C -0.342 4.342 4 C 0.419 3.581 5 O -0.472 6.472 6 N -0.386 5.386 7 C -0.029 4.029 8 C -0.119 4.119 9 C -0.130 4.130 10 C -0.105 4.105 11 C -0.191 4.191 12 C -0.024 4.024 13 O -0.329 6.329 14 C -0.024 4.024 15 C -0.184 4.184 16 C -0.017 4.017 17 C -0.111 4.111 18 N -0.153 5.153 19 N -0.113 5.113 20 C 0.149 3.851 21 C -0.595 4.595 22 H 0.069 0.931 23 C -0.177 4.177 24 N -0.553 5.553 25 Si 0.795 3.205 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.192 1.192 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.071 0.929 43 H 0.116 0.884 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.117 0.883 48 H 0.236 0.764 49 H 0.051 0.949 50 H 0.068 0.932 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.887 25.065 0.452 27.745 hybrid contribution -0.900 -0.283 -0.759 1.210 sum 10.987 24.783 -0.307 27.111 Atomic orbital electron populations 1.20577 0.85845 1.04231 1.04063 1.21950 0.95962 0.86666 0.94559 1.19895 0.93379 0.92777 1.28175 1.16674 0.83831 0.83043 0.74564 1.90668 1.17624 1.84458 1.54457 1.49337 1.08787 1.07286 1.73217 1.23703 0.79359 0.97752 1.02044 1.22967 0.93959 0.94505 1.00517 1.21482 0.93222 0.98449 0.99802 1.21198 0.94567 0.94343 1.00356 1.22338 0.96555 0.98627 1.01570 1.22700 0.92345 0.89545 0.97762 1.87906 1.44837 1.15298 1.84907 1.22737 0.95373 0.85100 0.99199 1.22211 0.95713 0.99577 1.00929 1.23233 0.98067 0.78714 1.01648 1.24630 0.97623 0.91531 0.97365 1.77089 0.98388 1.14243 1.25616 1.49125 1.03316 1.07762 1.51141 1.19382 0.95300 0.72204 0.98207 1.21349 1.48181 0.98517 0.91472 0.93073 1.25734 0.93773 0.95856 1.02375 1.69988 1.44651 1.07467 1.33232 0.85404 0.78849 0.77708 0.78561 1.19760 1.19669 1.19203 0.89035 0.90971 0.88506 0.87644 0.89873 0.87687 0.89615 0.90413 0.90731 0.90965 0.89997 0.93014 0.88944 0.92910 0.88394 0.89413 0.91284 0.91320 0.88283 0.76405 0.94933 0.93173 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.41 9.35 71.24 0.67 -2.75 16 2 C 0.14 6.18 7.01 42.14 0.30 6.48 16 3 C -0.33 -12.40 6.13 -20.15 -0.12 -12.52 16 4 C 0.63 21.77 8.06 86.66 0.70 22.47 16 5 O -0.59 -23.93 15.61 -4.04 -0.06 -23.99 16 6 N -0.65 -15.83 3.69 -861.68 -3.18 -19.00 16 7 C 0.09 1.38 5.39 83.27 0.45 1.82 16 8 C -0.10 -1.08 3.55 -10.36 -0.04 -1.11 16 9 C -0.09 -0.58 4.64 30.60 0.14 -0.44 16 10 C -0.09 -0.66 2.26 -10.67 -0.02 -0.68 16 11 C -0.15 -1.51 4.81 30.69 0.15 -1.36 16 12 C 0.05 0.67 6.84 72.01 0.49 1.17 16 13 O -0.41 -6.64 10.77 -148.98 -1.60 -8.24 16 14 C 0.05 0.54 6.84 72.01 0.49 1.04 16 15 C -0.15 -1.10 5.42 30.68 0.17 -0.94 16 16 C 0.11 1.71 8.19 83.18 0.68 2.40 16 17 C 0.07 2.62 11.14 85.65 0.95 3.58 16 18 N -0.33 -14.69 12.50 -56.28 -0.70 -15.40 16 19 N -0.34 -15.90 3.56 -336.70 -1.20 -17.10 16 20 C 0.27 14.00 5.78 85.63 0.50 14.50 16 21 C -0.56 -30.97 9.39 25.60 0.24 -30.73 16 22 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 23 C 0.02 1.31 5.46 84.65 0.46 1.78 16 24 N -0.92 -51.44 13.29 21.45 0.28 -51.15 16 25 Si 0.97 42.81 29.54 68.60 2.03 44.83 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 28 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 29 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.07 2.88 7.70 -2.39 -0.02 2.86 16 31 H 0.10 3.66 6.49 -2.38 -0.02 3.64 16 32 H 0.11 1.19 7.87 -2.39 -0.02 1.17 16 33 H 0.08 1.21 5.38 -2.39 -0.01 1.19 16 34 H 0.10 1.20 8.12 -2.39 -0.02 1.18 16 35 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.08 0.45 7.80 -2.39 -0.02 0.43 16 37 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 38 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.08 0.76 6.03 -2.39 -0.01 0.74 16 40 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.10 1.28 8.10 -2.39 -0.02 1.26 16 48 H 0.22 5.34 5.20 -2.91 -0.02 5.33 16 49 H 0.03 1.83 8.14 -2.38 -0.02 1.81 16 50 H 0.05 2.63 7.62 -2.39 -0.02 2.61 16 51 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -71.92 404.65 2.69 -69.23 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.92 Total: 16.14 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 6.20 Total: 4.70 kcal Atomic # 7 Polarization: -97.86 SS G_CDS: -4.79 Total: -102.66 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.67 Total: -32.24 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -71.92 2.69 -69.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899214882.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.602 kcal (2) G-P(sol) polarization free energy of solvation -71.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds