Wall clock time and date at job start Wed Apr 1 2020 07:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38041 * 126.29673 * 2 1 4 4 C 1.47429 * 126.41067 * 0.02562 * 3 2 1 5 5 O 1.21610 * 120.00046 * 49.62811 * 4 3 2 6 6 N 1.34781 * 120.00163 * 229.62939 * 4 3 2 7 7 C 1.46923 * 120.64162 * 175.69790 * 6 4 3 8 8 C 1.53191 * 108.78079 * 233.66212 * 7 6 4 9 9 C 1.53019 * 109.33813 * 305.39241 * 8 7 6 10 10 C 1.53090 * 109.42781 * 181.21335 * 9 8 7 11 11 C 1.53178 * 109.17650 * 62.46673 * 10 9 8 12 12 C 1.53170 * 109.03851 * 56.97023 * 11 10 9 13 13 C 1.53102 * 109.14506 * 302.98773 * 12 11 10 14 14 O 1.42885 * 109.50822 * 301.17536 * 9 8 7 15 15 C 1.53034 * 109.56797 * 61.27775 * 9 8 7 16 16 C 1.46930 * 120.64110 * 355.71610 * 6 4 3 17 17 C 1.41290 * 107.17414 * 179.75899 * 3 2 1 18 18 N 1.30447 * 108.02238 * 0.24207 * 17 3 2 19 19 N 1.34265 * 126.29187 * 180.17683 * 2 1 3 20 20 C 1.46504 * 125.75262 * 359.96145 * 19 2 1 21 21 C 1.50702 * 109.47191 * 270.30894 * 20 19 2 22 22 H 1.08000 * 119.99397 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00123 * 179.97438 * 21 20 19 24 24 N 1.31518 * 120.00019 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00029 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46952 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46688 * 120.00438 * 25 23 21 28 28 H 1.48501 * 109.47493 * 240.00413 * 25 23 21 29 29 H 1.09006 * 109.46998 * 89.99755 * 1 2 3 30 30 H 1.08990 * 109.47375 * 209.99871 * 1 2 3 31 31 H 1.09001 * 109.47126 * 330.00344 * 1 2 3 32 32 H 1.08997 * 109.58929 * 113.86947 * 7 6 4 33 33 H 1.09000 * 109.58597 * 353.44757 * 7 6 4 34 34 H 1.09005 * 109.48904 * 185.43711 * 8 7 6 35 35 H 1.08989 * 109.51654 * 65.36733 * 8 7 6 36 36 H 1.08998 * 109.52101 * 182.37154 * 10 9 8 37 37 H 1.08995 * 109.51677 * 302.55754 * 10 9 8 38 38 H 1.09005 * 109.53968 * 176.83903 * 11 10 9 39 39 H 1.09002 * 109.54054 * 297.01086 * 11 10 9 40 40 H 1.09005 * 109.52611 * 62.88334 * 12 11 10 41 41 H 1.08998 * 109.53168 * 183.08499 * 12 11 10 42 42 H 1.09000 * 109.47468 * 177.61013 * 13 12 11 43 43 H 1.09001 * 109.47971 * 297.64003 * 13 12 11 44 44 H 1.09003 * 109.49334 * 58.66518 * 15 9 8 45 45 H 1.09002 * 109.49513 * 178.75083 * 15 9 8 46 46 H 1.08997 * 109.58994 * 246.11784 * 16 6 4 47 47 H 1.09004 * 109.58280 * 6.54451 * 16 6 4 48 48 H 1.07995 * 125.98588 * 180.24316 * 17 3 2 49 49 H 1.09002 * 109.46789 * 30.30769 * 20 19 2 50 50 H 1.09000 * 109.47140 * 150.30713 * 20 19 2 51 51 H 0.96997 * 119.99781 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 0.0005 5 8 1.0541 2.8978 0.8033 6 7 2.4071 3.3887 -0.8887 7 6 1.9136 4.7705 -0.9634 8 6 1.5071 5.0715 -2.4094 9 6 2.6852 4.7736 -3.3394 10 6 2.2912 5.1024 -4.7817 11 6 1.9820 6.5988 -4.8902 12 6 3.2042 7.3965 -4.4252 13 6 3.5618 6.9796 -2.9961 14 8 3.8072 5.5724 -2.9590 15 6 3.0556 3.2922 -3.2390 16 6 3.4796 2.9717 -1.8023 17 6 3.6591 0.6497 0.0057 18 7 3.6340 -0.6545 0.0036 19 7 2.3017 -1.0822 -0.0033 20 6 1.8501 -2.4759 -0.0068 21 6 1.6887 -2.9552 1.4128 22 1 1.9017 -2.2885 2.2353 23 6 1.2691 -4.2448 1.6615 24 7 1.0103 -5.0568 0.6598 25 14 1.0698 -4.8392 3.4211 26 1 1.4221 -3.7415 4.3572 27 1 -0.3391 -5.2498 3.6482 28 1 1.9674 -5.9985 3.6568 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 2.7018 5.4572 -0.6549 33 1 1.0492 4.8856 -0.3094 34 1 1.2302 6.1220 -2.4982 35 1 0.6580 4.4469 -2.6865 36 1 3.1144 4.8513 -5.4505 37 1 1.4077 4.5270 -5.0581 38 1 1.7552 6.8500 -5.9264 39 1 1.1258 6.8408 -4.2605 40 1 4.0463 7.1910 -5.0861 41 1 2.9740 8.4616 -4.4472 42 1 4.4565 7.5131 -2.6751 43 1 2.7347 7.2221 -2.3290 44 1 2.1931 2.6825 -3.5084 45 1 3.8804 3.0766 -3.9183 46 1 4.3951 3.5123 -1.5622 47 1 3.6489 1.8995 -1.7019 48 1 4.5449 1.2675 0.0109 49 1 0.8938 -2.5465 -0.5251 50 1 2.5870 -3.0953 -0.5180 51 1 0.7147 -5.9640 0.8348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899224474.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:23:23 Heat of formation + Delta-G solvation = -19.231809 kcal Electronic energy + Delta-G solvation = -31790.267974 eV Core-core repulsion = 27690.587240 eV Total energy + Delta-G solvation = -4099.680734 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.09518 -40.53227 -38.74960 -36.20873 -33.99886 -33.89806 -32.80894 -32.10061 -31.68475 -30.79831 -28.91918 -27.35674 -26.64967 -25.09541 -23.94845 -23.74971 -23.12547 -21.98584 -20.80386 -19.88692 -19.33262 -18.41459 -17.10782 -16.77725 -16.35857 -16.00057 -15.58488 -15.42945 -15.22667 -15.02101 -14.84932 -14.52090 -14.20957 -13.96774 -13.71661 -13.46742 -13.27673 -13.14803 -12.98509 -12.58510 -12.54772 -12.49836 -12.19848 -12.05981 -12.02792 -11.73911 -11.57682 -11.49081 -11.40015 -11.29072 -11.06456 -10.99588 -10.91242 -10.86661 -10.35127 -10.22924 -10.19104 -9.86700 -9.60858 -9.37390 -8.70154 -8.53538 -8.48432 -7.81431 -6.32307 -4.39792 2.35109 2.84484 3.08441 3.18567 3.26668 3.32138 3.44100 3.50222 3.63632 4.26351 4.30918 4.43028 4.46143 4.50696 4.64850 4.80525 4.91292 4.99684 5.03910 5.06321 5.15365 5.20168 5.24666 5.26311 5.36189 5.39021 5.49453 5.50043 5.56488 5.58614 5.66667 5.70251 5.71220 5.76523 5.83722 5.85282 5.88441 5.96752 5.99981 6.02949 6.12346 6.41865 6.54877 6.69897 6.81527 6.91773 7.03229 7.20468 7.59324 7.65469 7.79290 7.82608 8.42452 8.56895 8.67342 9.27419 10.75748 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026569 B = 0.002317 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.594081 B =12083.457071 C =12254.468437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.149 3.851 3 C -0.324 4.324 4 C 0.608 3.392 5 O -0.550 6.550 6 N -0.609 5.609 7 C 0.120 3.880 8 C -0.159 4.159 9 C 0.121 3.879 10 C -0.143 4.143 11 C -0.124 4.124 12 C -0.155 4.155 13 C 0.057 3.943 14 O -0.366 6.366 15 C -0.119 4.119 16 C 0.108 3.892 17 C 0.054 3.946 18 N -0.294 5.294 19 N -0.313 5.313 20 C 0.252 3.748 21 C -0.539 4.539 22 H 0.066 0.934 23 C 0.067 3.933 24 N -0.890 5.890 25 Si 0.907 3.093 26 H -0.270 1.270 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.053 0.947 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.099 0.901 48 H 0.176 0.824 49 H 0.055 0.945 50 H 0.057 0.943 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.114 23.260 -12.604 26.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.013 3.987 3 C -0.339 4.339 4 C 0.398 3.602 5 O -0.428 6.428 6 N -0.343 5.343 7 C -0.003 4.003 8 C -0.198 4.198 9 C 0.082 3.918 10 C -0.180 4.180 11 C -0.161 4.161 12 C -0.193 4.193 13 C -0.020 4.020 14 O -0.286 6.286 15 C -0.157 4.157 16 C -0.015 4.015 17 C -0.132 4.132 18 N -0.115 5.115 19 N -0.091 5.091 20 C 0.135 3.865 21 C -0.577 4.577 22 H 0.084 0.916 23 C -0.137 4.137 24 N -0.528 5.528 25 Si 0.734 3.266 26 H -0.195 1.195 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.117 0.883 48 H 0.193 0.807 49 H 0.073 0.927 50 H 0.075 0.925 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.473 21.916 -12.163 25.187 hybrid contribution -0.687 0.492 0.650 1.066 sum 1.786 22.409 -11.513 25.256 Atomic orbital electron populations 1.20550 0.87355 1.05047 1.02797 1.21267 0.94586 0.86494 0.96315 1.19591 0.93511 0.92338 1.28471 1.17478 0.79569 0.84103 0.79010 1.90705 1.34472 1.78947 1.38706 1.47900 1.38512 1.11070 1.36821 1.21374 1.00221 0.82740 0.95921 1.22546 0.98736 1.02443 0.96047 1.21412 0.86315 0.91578 0.92532 1.22173 1.02288 0.96584 0.96982 1.21620 0.97904 0.94994 1.01609 1.22179 0.98889 1.00110 0.98128 1.22562 1.01565 0.82360 0.95511 1.87973 1.36080 1.16077 1.88424 1.21931 1.02805 0.92940 0.98019 1.21817 0.89789 1.02144 0.87755 1.23690 0.96102 0.92377 1.00985 1.77134 0.98581 1.12123 1.23645 1.49301 1.02397 1.08137 1.49220 1.19824 0.96307 0.71024 0.99371 1.21323 1.47109 0.98137 0.91154 0.91556 1.24924 0.94492 0.96007 0.98269 1.69924 1.44724 1.07170 1.30980 0.86280 0.77934 0.78867 0.83539 1.19467 1.20573 1.20575 0.90861 0.89387 0.89373 0.91620 0.89162 0.90400 0.90449 0.90977 0.90886 0.91662 0.91590 0.91157 0.91142 0.89062 0.92923 0.90092 0.90056 0.90881 0.88299 0.80666 0.92695 0.92535 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.75 9.70 36.01 0.35 -1.40 16 2 C 0.15 3.03 7.01 -81.60 -0.57 2.46 16 3 C -0.32 -6.02 5.12 -105.07 -0.54 -6.56 16 4 C 0.61 10.54 7.33 -12.52 -0.09 10.45 16 5 O -0.55 -11.08 15.56 5.27 0.08 -11.00 16 6 N -0.61 -8.23 2.97 -174.04 -0.52 -8.74 16 7 C 0.12 1.38 6.18 -3.71 -0.02 1.35 16 8 C -0.16 -1.44 4.19 -26.62 -0.11 -1.55 16 9 C 0.12 1.06 0.68 -90.55 -0.06 1.00 16 10 C -0.14 -1.05 4.91 -26.59 -0.13 -1.18 16 11 C -0.12 -0.78 5.72 -26.55 -0.15 -0.93 16 12 C -0.16 -0.94 6.14 -26.59 -0.16 -1.10 16 13 C 0.06 0.40 6.52 37.21 0.24 0.65 16 14 O -0.37 -3.46 8.98 -35.23 -0.32 -3.78 16 15 C -0.12 -1.15 5.11 -26.62 -0.14 -1.28 16 16 C 0.11 1.24 5.67 -3.71 -0.02 1.22 16 17 C 0.05 0.98 9.65 -16.98 -0.16 0.81 16 18 N -0.29 -6.37 12.50 30.86 0.39 -5.99 16 19 N -0.31 -7.06 3.56 -57.77 -0.21 -7.27 16 20 C 0.25 6.25 5.78 -5.19 -0.03 6.22 16 21 C -0.54 -14.62 9.39 -34.44 -0.32 -14.94 16 22 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 23 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 24 N -0.89 -24.63 13.29 55.43 0.74 -23.89 16 25 Si 0.91 21.04 29.54 -169.99 -5.02 16.01 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.09 1.64 7.71 -51.93 -0.40 1.24 16 31 H 0.09 1.53 7.10 -51.93 -0.37 1.17 16 32 H 0.07 0.71 7.82 -51.93 -0.41 0.31 16 33 H 0.09 1.15 7.03 -51.93 -0.36 0.79 16 34 H 0.08 0.59 4.99 -51.93 -0.26 0.33 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.40 6.60 -51.93 -0.34 0.06 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.35 6.38 -51.93 -0.33 0.02 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 47 H 0.10 1.25 4.55 -51.93 -0.24 1.01 16 48 H 0.18 2.49 7.63 -52.49 -0.40 2.09 16 49 H 0.06 1.34 7.64 -51.93 -0.40 0.95 16 50 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 51 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 393.21 15.07 5.93 5.93 Total: -1.00 -31.19 393.21 -9.06 -40.25 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -8.11 Total: 1.57 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.02 Total: -3.09 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.40 Total: -45.89 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.23 Total: -14.78 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.19 -9.06 -40.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899224474.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.019 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds