Wall clock time and date at job start Wed Apr 1 2020 07:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38041 * 126.29673 * 2 1 4 4 C 1.47429 * 126.41067 * 0.02562 * 3 2 1 5 5 O 1.21610 * 120.00046 * 49.62811 * 4 3 2 6 6 N 1.34781 * 120.00163 * 229.62939 * 4 3 2 7 7 C 1.46923 * 120.64162 * 175.69790 * 6 4 3 8 8 C 1.53191 * 108.78079 * 233.66212 * 7 6 4 9 9 C 1.53019 * 109.33813 * 305.39241 * 8 7 6 10 10 C 1.53090 * 109.42781 * 181.21335 * 9 8 7 11 11 C 1.53178 * 109.17650 * 62.46673 * 10 9 8 12 12 C 1.53170 * 109.03851 * 56.97023 * 11 10 9 13 13 C 1.53102 * 109.14506 * 302.98773 * 12 11 10 14 14 O 1.42885 * 109.50822 * 301.17536 * 9 8 7 15 15 C 1.53034 * 109.56797 * 61.27775 * 9 8 7 16 16 C 1.46930 * 120.64110 * 355.71610 * 6 4 3 17 17 C 1.41290 * 107.17414 * 179.75899 * 3 2 1 18 18 N 1.30447 * 108.02238 * 0.24207 * 17 3 2 19 19 N 1.34265 * 126.29187 * 180.17683 * 2 1 3 20 20 C 1.46504 * 125.75262 * 359.96145 * 19 2 1 21 21 C 1.50702 * 109.47191 * 270.30894 * 20 19 2 22 22 H 1.08000 * 119.99397 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00123 * 179.97438 * 21 20 19 24 24 N 1.31518 * 120.00019 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00029 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46952 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46688 * 120.00438 * 25 23 21 28 28 H 1.48501 * 109.47493 * 240.00413 * 25 23 21 29 29 H 1.09006 * 109.46998 * 89.99755 * 1 2 3 30 30 H 1.08990 * 109.47375 * 209.99871 * 1 2 3 31 31 H 1.09001 * 109.47126 * 330.00344 * 1 2 3 32 32 H 1.08997 * 109.58929 * 113.86947 * 7 6 4 33 33 H 1.09000 * 109.58597 * 353.44757 * 7 6 4 34 34 H 1.09005 * 109.48904 * 185.43711 * 8 7 6 35 35 H 1.08989 * 109.51654 * 65.36733 * 8 7 6 36 36 H 1.08998 * 109.52101 * 182.37154 * 10 9 8 37 37 H 1.08995 * 109.51677 * 302.55754 * 10 9 8 38 38 H 1.09005 * 109.53968 * 176.83903 * 11 10 9 39 39 H 1.09002 * 109.54054 * 297.01086 * 11 10 9 40 40 H 1.09005 * 109.52611 * 62.88334 * 12 11 10 41 41 H 1.08998 * 109.53168 * 183.08499 * 12 11 10 42 42 H 1.09000 * 109.47468 * 177.61013 * 13 12 11 43 43 H 1.09001 * 109.47971 * 297.64003 * 13 12 11 44 44 H 1.09003 * 109.49334 * 58.66518 * 15 9 8 45 45 H 1.09002 * 109.49513 * 178.75083 * 15 9 8 46 46 H 1.08997 * 109.58994 * 246.11784 * 16 6 4 47 47 H 1.09004 * 109.58280 * 6.54451 * 16 6 4 48 48 H 1.07995 * 125.98588 * 180.24316 * 17 3 2 49 49 H 1.09002 * 109.46789 * 30.30769 * 20 19 2 50 50 H 1.09000 * 109.47140 * 150.30713 * 20 19 2 51 51 H 0.96997 * 119.99781 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 0.0005 5 8 1.0541 2.8978 0.8033 6 7 2.4071 3.3887 -0.8887 7 6 1.9136 4.7705 -0.9634 8 6 1.5071 5.0715 -2.4094 9 6 2.6852 4.7736 -3.3394 10 6 2.2912 5.1024 -4.7817 11 6 1.9820 6.5988 -4.8902 12 6 3.2042 7.3965 -4.4252 13 6 3.5618 6.9796 -2.9961 14 8 3.8072 5.5724 -2.9590 15 6 3.0556 3.2922 -3.2390 16 6 3.4796 2.9717 -1.8023 17 6 3.6591 0.6497 0.0057 18 7 3.6340 -0.6545 0.0036 19 7 2.3017 -1.0822 -0.0033 20 6 1.8501 -2.4759 -0.0068 21 6 1.6887 -2.9552 1.4128 22 1 1.9017 -2.2885 2.2353 23 6 1.2691 -4.2448 1.6615 24 7 1.0103 -5.0568 0.6598 25 14 1.0698 -4.8392 3.4211 26 1 1.4221 -3.7415 4.3572 27 1 -0.3391 -5.2498 3.6482 28 1 1.9674 -5.9985 3.6568 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 2.7018 5.4572 -0.6549 33 1 1.0492 4.8856 -0.3094 34 1 1.2302 6.1220 -2.4982 35 1 0.6580 4.4469 -2.6865 36 1 3.1144 4.8513 -5.4505 37 1 1.4077 4.5270 -5.0581 38 1 1.7552 6.8500 -5.9264 39 1 1.1258 6.8408 -4.2605 40 1 4.0463 7.1910 -5.0861 41 1 2.9740 8.4616 -4.4472 42 1 4.4565 7.5131 -2.6751 43 1 2.7347 7.2221 -2.3290 44 1 2.1931 2.6825 -3.5084 45 1 3.8804 3.0766 -3.9183 46 1 4.3951 3.5123 -1.5622 47 1 3.6489 1.8995 -1.7019 48 1 4.5449 1.2675 0.0109 49 1 0.8938 -2.5465 -0.5251 50 1 2.5870 -3.0953 -0.5180 51 1 0.7147 -5.9640 0.8348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899224474.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:23:22 Heat of formation + Delta-G solvation = -37.230225 kcal Electronic energy + Delta-G solvation = -31791.048443 eV Core-core repulsion = 27690.587240 eV Total energy + Delta-G solvation = -4100.461204 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.43187 -41.51302 -39.95700 -37.25857 -35.81315 -34.57321 -33.97480 -33.52863 -32.95986 -32.05103 -29.77112 -29.04552 -28.16725 -25.93206 -25.43910 -24.54411 -24.34923 -23.04257 -21.89750 -21.21130 -20.16012 -19.69903 -18.85362 -18.38435 -17.29904 -16.99735 -16.83616 -16.44592 -16.32175 -16.28002 -15.84033 -15.68763 -15.51738 -15.12452 -14.73646 -14.65054 -14.46015 -14.33369 -13.99078 -13.83528 -13.65491 -13.60605 -13.53574 -13.35258 -13.16735 -13.03475 -12.92041 -12.79860 -12.73253 -12.33515 -12.23235 -12.18784 -11.89387 -11.82454 -11.79346 -11.69401 -11.45903 -10.97426 -10.76375 -10.73211 -10.23955 -10.20498 -9.63955 -9.34757 -8.38204 -6.54110 0.80173 1.34864 1.35107 1.38698 1.49298 1.68135 1.97205 2.28819 2.32561 2.86603 2.93605 3.58551 3.68366 3.73893 3.79156 3.83149 3.99448 4.04156 4.12341 4.15111 4.17844 4.23856 4.37259 4.46512 4.48730 4.53813 4.56261 4.59923 4.61533 4.74908 4.79821 4.85818 4.87587 4.91398 4.94710 4.97305 5.01215 5.03355 5.07522 5.09255 5.15404 5.17980 5.22187 5.36206 5.46767 5.49533 5.60876 5.71183 5.75757 6.07536 6.41717 6.43296 6.55721 6.84707 7.17053 7.24421 8.69472 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026569 B = 0.002317 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.594081 B =12083.457071 C =12254.468437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.135 3.865 3 C -0.321 4.321 4 C 0.608 3.392 5 O -0.584 6.584 6 N -0.598 5.598 7 C 0.118 3.882 8 C -0.152 4.152 9 C 0.124 3.876 10 C -0.140 4.140 11 C -0.124 4.124 12 C -0.152 4.152 13 C 0.050 3.950 14 O -0.382 6.382 15 C -0.118 4.118 16 C 0.107 3.893 17 C 0.074 3.926 18 N -0.332 5.332 19 N -0.336 5.336 20 C 0.269 3.731 21 C -0.556 4.556 22 H 0.047 0.953 23 C 0.026 3.974 24 N -0.915 5.915 25 Si 0.969 3.031 26 H -0.276 1.276 27 H -0.267 1.267 28 H -0.272 1.272 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.214 0.786 49 H 0.053 0.947 50 H 0.033 0.967 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.323 25.262 -13.272 28.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.000 4.000 3 C -0.336 4.336 4 C 0.398 3.602 5 O -0.465 6.465 6 N -0.330 5.330 7 C -0.004 4.004 8 C -0.190 4.190 9 C 0.084 3.916 10 C -0.178 4.178 11 C -0.161 4.161 12 C -0.189 4.189 13 C -0.026 4.026 14 O -0.302 6.302 15 C -0.156 4.156 16 C -0.015 4.015 17 C -0.112 4.112 18 N -0.152 5.152 19 N -0.114 5.114 20 C 0.151 3.849 21 C -0.594 4.594 22 H 0.066 0.934 23 C -0.176 4.176 24 N -0.553 5.553 25 Si 0.793 3.207 26 H -0.201 1.201 27 H -0.192 1.192 28 H -0.198 1.198 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.118 0.882 43 H 0.075 0.925 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.231 0.769 49 H 0.071 0.929 50 H 0.051 0.949 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.697 23.951 -12.874 27.326 hybrid contribution -0.677 0.013 0.798 1.046 sum 2.020 23.964 -12.077 26.911 Atomic orbital electron populations 1.20552 0.85989 1.04296 1.04215 1.21783 0.95732 0.86436 0.96062 1.19819 0.93543 0.92871 1.27416 1.17301 0.79546 0.83922 0.79478 1.90691 1.36087 1.79354 1.40367 1.47929 1.38052 1.11371 1.35633 1.21525 0.99969 0.81444 0.97450 1.22500 0.98714 1.03542 0.94237 1.21353 0.86008 0.90884 0.93329 1.22139 1.02323 0.97582 0.95751 1.21637 0.98101 0.94074 1.02286 1.22152 0.98585 1.00948 0.97247 1.22736 1.02258 0.81240 0.96357 1.87946 1.36331 1.17303 1.88625 1.21919 1.03075 0.93851 0.96720 1.21924 0.89561 1.01519 0.88520 1.24280 0.97208 0.91464 0.98206 1.77085 0.98482 1.13961 1.25669 1.49044 1.03166 1.07664 1.51519 1.19351 0.95357 0.72331 0.97905 1.21427 1.47779 0.98448 0.91718 0.93434 1.25681 0.93890 0.95934 1.02087 1.69991 1.44912 1.07620 1.32747 0.85342 0.78533 0.78129 0.78704 1.20088 1.19205 1.19753 0.88367 0.90842 0.89147 0.90601 0.90589 0.88476 0.90912 0.91110 0.90643 0.90835 0.91233 0.91598 0.89673 0.88236 0.92474 0.90515 0.88932 0.89716 0.89475 0.76917 0.92935 0.94912 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.30 9.70 71.24 0.69 -2.61 16 2 C 0.13 5.54 7.01 42.14 0.30 5.83 16 3 C -0.32 -11.87 5.12 -20.15 -0.10 -11.97 16 4 C 0.61 20.70 7.33 86.66 0.64 21.34 16 5 O -0.58 -23.46 15.56 -4.06 -0.06 -23.52 16 6 N -0.60 -15.35 2.97 -822.78 -2.45 -17.80 16 7 C 0.12 2.52 6.18 86.36 0.53 3.05 16 8 C -0.15 -2.42 4.19 30.66 0.13 -2.29 16 9 C 0.12 1.89 0.68 -10.75 -0.01 1.88 16 10 C -0.14 -1.73 4.91 30.68 0.15 -1.58 16 11 C -0.12 -1.20 5.72 30.71 0.18 -1.03 16 12 C -0.15 -1.41 6.14 30.69 0.19 -1.22 16 13 C 0.05 0.58 6.52 72.02 0.47 1.05 16 14 O -0.38 -6.26 8.98 -148.98 -1.34 -7.60 16 15 C -0.12 -2.06 5.11 30.67 0.16 -1.90 16 16 C 0.11 2.27 5.67 86.36 0.49 2.76 16 17 C 0.07 2.63 9.65 85.65 0.83 3.46 16 18 N -0.33 -14.55 12.50 -56.28 -0.70 -15.25 16 19 N -0.34 -15.59 3.56 -336.68 -1.20 -16.79 16 20 C 0.27 13.87 5.78 85.63 0.49 14.37 16 21 C -0.56 -31.01 9.39 25.60 0.24 -30.77 16 22 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 23 C 0.03 1.39 5.46 84.65 0.46 1.85 16 24 N -0.91 -51.09 13.29 21.45 0.28 -50.81 16 25 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 29 H 0.10 2.95 8.14 -2.38 -0.02 2.93 16 30 H 0.07 2.82 7.71 -2.39 -0.02 2.81 16 31 H 0.09 3.18 7.10 -2.39 -0.02 3.16 16 32 H 0.08 1.49 7.82 -2.39 -0.02 1.47 16 33 H 0.08 1.88 7.03 -2.39 -0.02 1.86 16 34 H 0.10 1.20 4.99 -2.38 -0.01 1.19 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.07 0.64 6.60 -2.39 -0.02 0.62 16 40 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 0.60 6.38 -2.39 -0.02 0.59 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.08 1.65 7.82 -2.39 -0.02 1.63 16 47 H 0.09 2.07 4.55 -2.38 -0.01 2.06 16 48 H 0.21 5.62 7.63 -2.91 -0.02 5.60 16 49 H 0.05 2.68 7.64 -2.39 -0.02 2.66 16 50 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 51 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -67.85 393.21 3.32 -64.53 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.93 Total: 19.68 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 5.83 Total: 2.21 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -4.06 Total: -100.65 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -1.40 Total: -31.12 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -67.85 3.32 -64.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899224474.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.302 kcal (2) G-P(sol) polarization free energy of solvation -67.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds