Wall clock time and date at job start Wed Apr 1 2020 04:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38347 * 119.40912 * 2 1 4 4 C 1.38338 * 119.45896 * 179.74795 * 3 2 1 5 5 C 1.50695 * 120.82692 * 180.25362 * 4 3 2 6 6 C 1.39986 * 118.34947 * 0.47454 * 4 3 2 7 7 C 1.47518 * 120.60205 * 179.80138 * 6 4 3 8 8 O 1.21590 * 120.00102 * 269.72434 * 7 6 4 9 9 N 1.34778 * 119.99897 * 89.71709 * 7 6 4 10 10 C 1.46504 * 120.00018 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.44877 * 34.96626 * 10 9 7 12 12 C 1.53045 * 109.45883 * 275.00421 * 10 9 7 13 13 C 1.53189 * 109.31183 * 178.61566 * 12 10 9 14 14 N 1.46933 * 108.77712 * 54.63310 * 13 12 10 15 15 C 1.36936 * 120.62939 * 126.36691 * 14 13 12 16 16 H 1.07995 * 120.00289 * 332.50485 * 15 14 13 17 17 C 1.38817 * 119.99502 * 152.50384 * 15 14 13 18 18 N 1.31612 * 120.00107 * 335.02596 * 17 15 14 19 19 Si 1.86801 * 119.99419 * 155.02751 * 17 15 14 20 20 H 1.48497 * 109.47275 * 90.00269 * 19 17 15 21 21 H 1.48502 * 109.46928 * 209.99622 * 19 17 15 22 22 H 1.48494 * 109.47235 * 329.99781 * 19 17 15 23 23 C 1.46930 * 118.73578 * 306.64412 * 14 13 12 24 24 C 1.52757 * 109.00623 * 53.30912 * 23 14 13 25 25 C 1.53002 * 109.56342 * 185.54745 * 24 23 14 26 26 C 1.53001 * 109.36264 * 65.49898 * 24 23 14 27 27 C 1.40281 * 118.80107 * 359.53139 * 6 4 3 28 28 O 1.35432 * 119.79676 * 180.25040 * 27 6 4 29 29 N 1.31884 * 119.40368 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.46753 * 270.01807 * 1 2 3 31 31 H 1.08998 * 109.47107 * 30.01307 * 1 2 3 32 32 H 1.08998 * 109.47231 * 150.02130 * 1 2 3 33 33 H 1.08003 * 120.27397 * 0.02562 * 3 2 1 34 34 H 1.08996 * 109.47501 * 270.22683 * 5 4 3 35 35 H 1.08997 * 109.47193 * 30.23087 * 5 4 3 36 36 H 1.09001 * 109.47255 * 150.22672 * 5 4 3 37 37 H 0.96999 * 119.99946 * 0.02562 * 9 7 6 38 38 H 1.08994 * 109.49993 * 58.66025 * 12 10 9 39 39 H 1.09001 * 109.52374 * 298.58317 * 12 10 9 40 40 H 1.09000 * 109.58791 * 294.84911 * 13 12 10 41 41 H 1.09003 * 109.70663 * 174.48983 * 13 12 10 42 42 H 0.96997 * 120.00247 * 354.26122 * 18 17 15 43 43 H 1.09001 * 109.58180 * 173.14154 * 23 14 13 44 44 H 1.08991 * 109.58526 * 293.56754 * 23 14 13 45 45 H 1.08999 * 109.47539 * 179.97438 * 25 24 23 46 46 H 1.08997 * 109.47556 * 299.96818 * 25 24 23 47 47 H 1.09007 * 109.46919 * 59.96544 * 25 24 23 48 48 H 1.09002 * 109.47061 * 300.15618 * 26 24 23 49 49 H 1.09006 * 109.47136 * 60.15349 * 26 24 23 50 50 H 1.08998 * 109.47171 * 180.15460 * 26 24 23 51 51 H 0.96700 * 113.99802 * 90.00111 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2064 0.0053 5 6 4.3408 2.5011 0.0112 6 6 4.2356 -0.0250 0.0003 7 6 5.7097 -0.0816 0.0012 8 8 6.3178 -0.1053 -1.0514 9 7 6.3823 -0.1070 1.1688 10 6 7.8463 -0.1627 1.1697 11 1 8.2319 0.4119 0.3276 12 6 8.3012 -1.6186 1.0445 13 6 9.8319 -1.6700 1.0110 14 7 10.3545 -0.9742 2.1949 15 6 11.2388 -1.5957 3.0357 16 1 11.2324 -2.6718 3.1265 17 6 12.1435 -0.8424 3.7713 18 7 12.5094 0.3476 3.3445 19 14 12.8415 -1.5179 5.3669 20 1 14.0856 -2.2767 5.0810 21 1 13.1479 -0.3942 6.2881 22 1 11.8461 -2.4197 6.0000 23 6 9.9055 0.3989 2.4628 24 6 8.3783 0.4290 2.4770 25 6 7.8956 1.8742 2.6171 26 6 7.8655 -0.3979 3.6578 27 6 3.4757 -1.2042 0.0002 28 8 4.0991 -2.4065 0.0006 29 7 2.1545 -1.1490 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3633 0.8899 -0.5140 32 1 -0.3633 -0.8901 -0.5135 33 1 1.6412 2.1375 0.0004 34 1 4.5272 2.8177 -1.0150 35 1 3.7619 3.2664 0.5281 36 1 5.2912 2.3557 0.5248 37 1 5.8972 -0.0883 2.0086 38 1 7.9026 -2.0465 0.1247 39 1 7.9366 -2.1889 1.8989 40 1 10.1944 -1.1781 0.1084 41 1 10.1651 -2.7079 1.0204 42 1 12.2130 0.6640 2.4768 43 1 10.2851 0.7250 3.4311 44 1 10.2740 1.0629 1.6810 45 1 6.8059 1.8940 2.6266 46 1 8.2747 2.2952 3.5482 47 1 8.2626 2.4629 1.7762 48 1 8.2110 -1.4269 3.5580 49 1 8.2447 0.0240 4.5887 50 1 6.7758 -0.3798 3.6680 51 1 4.2798 -2.7555 0.8841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940930233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:50 Heat of formation + Delta-G solvation = -31.157369 kcal Electronic energy + Delta-G solvation = -32304.673271 eV Core-core repulsion = 28204.475406 eV Total energy + Delta-G solvation = -4100.197865 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.23118 -39.83757 -38.14812 -37.61991 -34.83219 -34.51642 -32.97465 -32.22424 -31.99170 -29.53021 -28.50754 -27.84199 -26.92295 -26.16573 -24.98847 -23.61435 -22.49514 -21.71179 -20.80441 -20.37218 -18.71251 -18.66795 -17.65591 -17.46727 -17.10275 -16.23665 -15.70363 -15.10373 -14.66835 -14.52032 -14.46825 -14.19209 -13.83794 -13.71778 -13.66718 -13.62509 -13.40834 -13.33595 -13.15228 -12.77341 -12.70259 -12.48400 -12.32936 -12.15599 -11.94780 -11.90689 -11.59156 -11.54680 -10.99533 -10.97859 -10.71556 -10.48766 -10.41837 -10.24365 -10.10129 -10.08157 -9.88868 -9.81461 -9.60464 -9.27706 -9.09871 -8.81710 -8.38063 -6.90055 -6.08756 -3.24254 0.47707 0.77027 2.54182 2.98377 3.23991 3.30319 3.48342 3.51174 3.66472 4.13779 4.18543 4.56331 4.57579 4.65738 4.84838 4.94969 5.02018 5.06200 5.10452 5.17132 5.22901 5.24630 5.30574 5.38358 5.47832 5.50053 5.60259 5.68370 5.72098 5.78852 5.81519 5.90946 5.93989 6.07124 6.12060 6.14838 6.25792 6.30438 6.37088 6.49248 6.53429 6.70748 6.75857 6.79394 6.85021 7.04512 7.11404 7.15539 7.53061 7.55940 7.99260 8.21616 8.55791 9.09423 9.82785 10.27238 11.20051 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.002735 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.919970 B =10234.429074 C =10530.209243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.166 3.834 3 C -0.187 4.187 4 C 0.011 3.989 5 C -0.125 4.125 6 C -0.200 4.200 7 C 0.571 3.429 8 O -0.524 6.524 9 N -0.712 5.712 10 C 0.164 3.836 11 H 0.081 0.919 12 C -0.143 4.143 13 C 0.149 3.851 14 N -0.596 5.596 15 C -0.346 4.346 16 H 0.056 0.944 17 C -0.023 4.023 18 N -0.916 5.916 19 Si 1.063 2.937 20 H -0.294 1.294 21 H -0.287 1.287 22 H -0.293 1.293 23 C 0.166 3.834 24 C -0.091 4.091 25 C -0.136 4.136 26 C -0.128 4.128 27 C 0.355 3.645 28 O -0.472 6.472 29 N -0.507 5.507 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.395 0.605 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.018 0.982 41 H 0.058 0.942 42 H 0.269 0.731 43 H 0.085 0.915 44 H 0.017 0.983 45 H 0.045 0.955 46 H 0.057 0.943 47 H 0.051 0.949 48 H 0.072 0.928 49 H 0.054 0.946 50 H 0.030 0.970 51 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.317 3.892 -2.354 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.207 4.207 4 C 0.003 3.997 5 C -0.182 4.182 6 C -0.207 4.207 7 C 0.355 3.645 8 O -0.400 6.400 9 N -0.363 5.363 10 C 0.060 3.940 11 H 0.100 0.900 12 C -0.183 4.183 13 C 0.022 3.978 14 N -0.319 5.319 15 C -0.475 4.475 16 H 0.073 0.927 17 C -0.225 4.225 18 N -0.557 5.557 19 Si 0.893 3.107 20 H -0.222 1.222 21 H -0.212 1.212 22 H -0.219 1.219 23 C 0.039 3.961 24 C -0.093 4.093 25 C -0.194 4.194 26 C -0.185 4.185 27 C 0.175 3.825 28 O -0.279 6.279 29 N -0.227 5.227 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.162 0.838 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.230 0.770 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.036 0.964 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.035 0.965 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.091 0.909 49 H 0.073 0.927 50 H 0.049 0.951 51 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -22.275 3.446 -2.397 22.667 hybrid contribution -0.710 0.116 -0.557 0.910 sum -22.985 3.563 -2.954 23.446 Atomic orbital electron populations 1.20796 0.88144 1.03922 1.03505 1.21173 0.96976 0.87075 0.91994 1.21773 0.93620 0.99612 1.05726 1.20281 0.93662 0.94231 0.91512 1.20956 1.00275 0.93016 1.03904 1.20953 0.95375 0.94062 1.10262 1.17752 0.85719 0.76482 0.84531 1.90827 1.68977 1.48850 1.31312 1.46354 1.08381 1.74011 1.07571 1.21026 0.76996 0.97328 0.98607 0.90048 1.22434 0.99270 0.95494 1.01081 1.20868 0.90145 0.96949 0.89798 1.44106 1.50210 1.12674 1.24886 1.19946 1.13015 0.92683 1.21866 0.92654 1.25787 0.94825 0.97259 1.04651 1.70750 1.42200 1.21124 1.21578 0.83574 0.75629 0.75169 0.76360 1.22201 1.21234 1.21925 1.20902 0.87670 0.86743 1.00804 1.21357 1.00062 0.94286 0.93624 1.21801 0.99677 0.96089 1.01858 1.21759 0.97432 1.01879 0.97440 1.19005 0.86323 0.84511 0.92663 1.84769 1.76613 1.32584 1.33935 1.67048 1.09133 1.30422 1.16078 0.89879 0.90217 0.90112 0.83823 0.89542 0.90114 0.90472 0.76952 0.92458 0.91712 0.96425 0.92368 0.91975 0.89648 0.96499 0.93635 0.92370 0.92976 0.90884 0.92723 0.95086 0.73745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.16 36.01 0.37 -0.25 16 2 C 0.17 1.56 6.78 -82.53 -0.56 1.00 16 3 C -0.19 -1.58 9.41 -39.50 -0.37 -1.95 16 4 C 0.01 0.11 5.95 -103.93 -0.62 -0.50 16 5 C -0.13 -1.08 9.69 36.00 0.35 -0.73 16 6 C -0.20 -2.56 5.66 -104.69 -0.59 -3.15 16 7 C 0.57 8.55 5.38 -12.48 -0.07 8.49 16 8 O -0.52 -10.13 16.77 5.29 0.09 -10.04 16 9 N -0.71 -9.58 4.29 -54.81 -0.23 -9.82 16 10 C 0.16 2.69 1.57 -67.89 -0.11 2.58 16 11 H 0.08 1.54 7.57 -51.93 -0.39 1.14 16 12 C -0.14 -2.52 5.31 -26.61 -0.14 -2.66 16 13 C 0.15 3.14 6.52 -3.71 -0.02 3.11 16 14 N -0.60 -14.15 2.30 -172.58 -0.40 -14.55 16 15 C -0.35 -9.25 9.49 -15.06 -0.14 -9.40 16 16 H 0.06 1.50 7.94 -52.49 -0.42 1.08 16 17 C -0.02 -0.64 4.68 -17.43 -0.08 -0.72 16 18 N -0.92 -26.66 12.41 55.49 0.69 -25.97 16 19 Si 1.06 24.61 29.99 -169.99 -5.10 19.52 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.17 3.62 3.33 -3.93 -0.01 3.61 16 24 C -0.09 -1.52 0.56 -154.61 -0.09 -1.61 16 25 C -0.14 -1.95 8.31 37.16 0.31 -1.64 16 26 C -0.13 -2.04 7.82 37.16 0.29 -1.75 16 27 C 0.35 4.60 7.77 -16.61 -0.13 4.47 16 28 O -0.47 -5.98 13.01 -17.99 -0.23 -6.22 16 29 N -0.51 -6.18 10.28 -9.21 -0.09 -6.28 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.49 8.10 -51.93 -0.42 0.06 16 36 H 0.08 0.77 7.19 -51.93 -0.37 0.39 16 37 H 0.40 4.49 6.65 -40.82 -0.27 4.22 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.12 6.34 -51.93 -0.33 0.79 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16 42 H 0.27 7.92 6.71 -40.82 -0.27 7.65 16 43 H 0.09 2.11 6.30 -51.93 -0.33 1.78 16 44 H 0.02 0.39 7.87 -51.93 -0.41 -0.02 16 45 H 0.04 0.54 7.36 -51.93 -0.38 0.16 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.07 1.33 5.97 -51.93 -0.31 1.02 16 49 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.03 0.39 6.58 -51.93 -0.34 0.05 16 51 H 0.40 3.22 9.06 45.56 0.41 3.64 16 LS Contribution 401.59 15.07 6.05 6.05 Total: -1.00 -33.81 401.59 -8.12 -41.93 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.27 Total: 6.48 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.62 Total: -1.10 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.04 Total: -56.62 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.15 Total: -16.25 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.10 Total: 19.52 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.81 -8.12 -41.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940930233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.769 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds