Wall clock time and date at job start Wed Apr 1 2020 04:52:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38347 * 119.40912 * 2 1
4 4 C 1.38338 * 119.45896 * 179.74795 * 3 2 1
5 5 C 1.50695 * 120.82692 * 180.25362 * 4 3 2
6 6 C 1.39986 * 118.34947 * 0.47454 * 4 3 2
7 7 C 1.47518 * 120.60205 * 179.80138 * 6 4 3
8 8 O 1.21590 * 120.00102 * 269.72434 * 7 6 4
9 9 N 1.34778 * 119.99897 * 89.71709 * 7 6 4
10 10 C 1.46504 * 120.00018 * 180.02562 * 9 7 6
11 11 H 1.08999 * 109.44877 * 34.96626 * 10 9 7
12 12 C 1.53045 * 109.45883 * 275.00421 * 10 9 7
13 13 C 1.53189 * 109.31183 * 178.61566 * 12 10 9
14 14 N 1.46933 * 108.77712 * 54.63310 * 13 12 10
15 15 C 1.36936 * 120.62939 * 126.36691 * 14 13 12
16 16 H 1.07995 * 120.00289 * 332.50485 * 15 14 13
17 17 C 1.38817 * 119.99502 * 152.50384 * 15 14 13
18 18 N 1.31612 * 120.00107 * 335.02596 * 17 15 14
19 19 Si 1.86801 * 119.99419 * 155.02751 * 17 15 14
20 20 H 1.48497 * 109.47275 * 90.00269 * 19 17 15
21 21 H 1.48502 * 109.46928 * 209.99622 * 19 17 15
22 22 H 1.48494 * 109.47235 * 329.99781 * 19 17 15
23 23 C 1.46930 * 118.73578 * 306.64412 * 14 13 12
24 24 C 1.52757 * 109.00623 * 53.30912 * 23 14 13
25 25 C 1.53002 * 109.56342 * 185.54745 * 24 23 14
26 26 C 1.53001 * 109.36264 * 65.49898 * 24 23 14
27 27 C 1.40281 * 118.80107 * 359.53139 * 6 4 3
28 28 O 1.35432 * 119.79676 * 180.25040 * 27 6 4
29 29 N 1.31884 * 119.40368 * 179.97438 * 2 1 3
30 30 H 1.09002 * 109.46753 * 270.01807 * 1 2 3
31 31 H 1.08998 * 109.47107 * 30.01307 * 1 2 3
32 32 H 1.08998 * 109.47231 * 150.02130 * 1 2 3
33 33 H 1.08003 * 120.27397 * 0.02562 * 3 2 1
34 34 H 1.08996 * 109.47501 * 270.22683 * 5 4 3
35 35 H 1.08997 * 109.47193 * 30.23087 * 5 4 3
36 36 H 1.09001 * 109.47255 * 150.22672 * 5 4 3
37 37 H 0.96999 * 119.99946 * 0.02562 * 9 7 6
38 38 H 1.08994 * 109.49993 * 58.66025 * 12 10 9
39 39 H 1.09001 * 109.52374 * 298.58317 * 12 10 9
40 40 H 1.09000 * 109.58791 * 294.84911 * 13 12 10
41 41 H 1.09003 * 109.70663 * 174.48983 * 13 12 10
42 42 H 0.96997 * 120.00247 * 354.26122 * 18 17 15
43 43 H 1.09001 * 109.58180 * 173.14154 * 23 14 13
44 44 H 1.08991 * 109.58526 * 293.56754 * 23 14 13
45 45 H 1.08999 * 109.47539 * 179.97438 * 25 24 23
46 46 H 1.08997 * 109.47556 * 299.96818 * 25 24 23
47 47 H 1.09007 * 109.46919 * 59.96544 * 25 24 23
48 48 H 1.09002 * 109.47061 * 300.15618 * 26 24 23
49 49 H 1.09006 * 109.47136 * 60.15349 * 26 24 23
50 50 H 1.08998 * 109.47171 * 180.15460 * 26 24 23
51 51 H 0.96700 * 113.99802 * 90.00111 * 28 27 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1864 1.2052 0.0000
4 6 3.5697 1.2064 0.0053
5 6 4.3408 2.5011 0.0112
6 6 4.2356 -0.0250 0.0003
7 6 5.7097 -0.0816 0.0012
8 8 6.3178 -0.1053 -1.0514
9 7 6.3823 -0.1070 1.1688
10 6 7.8463 -0.1627 1.1697
11 1 8.2319 0.4119 0.3276
12 6 8.3012 -1.6186 1.0445
13 6 9.8319 -1.6700 1.0110
14 7 10.3545 -0.9742 2.1949
15 6 11.2388 -1.5957 3.0357
16 1 11.2324 -2.6718 3.1265
17 6 12.1435 -0.8424 3.7713
18 7 12.5094 0.3476 3.3445
19 14 12.8415 -1.5179 5.3669
20 1 14.0856 -2.2767 5.0810
21 1 13.1479 -0.3942 6.2881
22 1 11.8461 -2.4197 6.0000
23 6 9.9055 0.3989 2.4628
24 6 8.3783 0.4290 2.4770
25 6 7.8956 1.8742 2.6171
26 6 7.8655 -0.3979 3.6578
27 6 3.4757 -1.2042 0.0002
28 8 4.0991 -2.4065 0.0006
29 7 2.1545 -1.1490 0.0005
30 1 -0.3633 0.0003 1.0277
31 1 -0.3633 0.8899 -0.5140
32 1 -0.3633 -0.8901 -0.5135
33 1 1.6412 2.1375 0.0004
34 1 4.5272 2.8177 -1.0150
35 1 3.7619 3.2664 0.5281
36 1 5.2912 2.3557 0.5248
37 1 5.8972 -0.0883 2.0086
38 1 7.9026 -2.0465 0.1247
39 1 7.9366 -2.1889 1.8989
40 1 10.1944 -1.1781 0.1084
41 1 10.1651 -2.7079 1.0204
42 1 12.2130 0.6640 2.4768
43 1 10.2851 0.7250 3.4311
44 1 10.2740 1.0629 1.6810
45 1 6.8059 1.8940 2.6266
46 1 8.2747 2.2952 3.5482
47 1 8.2626 2.4629 1.7762
48 1 8.2110 -1.4269 3.5580
49 1 8.2447 0.0240 4.5887
50 1 6.7758 -0.3798 3.6680
51 1 4.2798 -2.7555 0.8841
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000940930233.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:52:50
Heat of formation + Delta-G solvation = -31.157369 kcal
Electronic energy + Delta-G solvation = -32304.673271 eV
Core-core repulsion = 28204.475406 eV
Total energy + Delta-G solvation = -4100.197865 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.42 seconds
Orbital eigenvalues (eV)
-41.23118 -39.83757 -38.14812 -37.61991 -34.83219 -34.51642 -32.97465 -32.22424
-31.99170 -29.53021 -28.50754 -27.84199 -26.92295 -26.16573 -24.98847 -23.61435
-22.49514 -21.71179 -20.80441 -20.37218 -18.71251 -18.66795 -17.65591 -17.46727
-17.10275 -16.23665 -15.70363 -15.10373 -14.66835 -14.52032 -14.46825 -14.19209
-13.83794 -13.71778 -13.66718 -13.62509 -13.40834 -13.33595 -13.15228 -12.77341
-12.70259 -12.48400 -12.32936 -12.15599 -11.94780 -11.90689 -11.59156 -11.54680
-10.99533 -10.97859 -10.71556 -10.48766 -10.41837 -10.24365 -10.10129 -10.08157
-9.88868 -9.81461 -9.60464 -9.27706 -9.09871 -8.81710 -8.38063 -6.90055
-6.08756 -3.24254 0.47707 0.77027 2.54182 2.98377 3.23991 3.30319
3.48342 3.51174 3.66472 4.13779 4.18543 4.56331 4.57579 4.65738
4.84838 4.94969 5.02018 5.06200 5.10452 5.17132 5.22901 5.24630
5.30574 5.38358 5.47832 5.50053 5.60259 5.68370 5.72098 5.78852
5.81519 5.90946 5.93989 6.07124 6.12060 6.14838 6.25792 6.30438
6.37088 6.49248 6.53429 6.70748 6.75857 6.79394 6.85021 7.04512
7.11404 7.15539 7.53061 7.55940 7.99260 8.21616 8.55791 9.09423
9.82785 10.27238 11.20051
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.021160 B = 0.002735 C = 0.002658
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1322.919970 B =10234.429074 C =10530.209243
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C 0.166 3.834
3 C -0.187 4.187
4 C 0.011 3.989
5 C -0.125 4.125
6 C -0.200 4.200
7 C 0.571 3.429
8 O -0.524 6.524
9 N -0.712 5.712
10 C 0.164 3.836
11 H 0.081 0.919
12 C -0.143 4.143
13 C 0.149 3.851
14 N -0.596 5.596
15 C -0.346 4.346
16 H 0.056 0.944
17 C -0.023 4.023
18 N -0.916 5.916
19 Si 1.063 2.937
20 H -0.294 1.294
21 H -0.287 1.287
22 H -0.293 1.293
23 C 0.166 3.834
24 C -0.091 4.091
25 C -0.136 4.136
26 C -0.128 4.128
27 C 0.355 3.645
28 O -0.472 6.472
29 N -0.507 5.507
30 H 0.083 0.917
31 H 0.079 0.921
32 H 0.080 0.920
33 H 0.144 0.856
34 H 0.086 0.914
35 H 0.080 0.920
36 H 0.076 0.924
37 H 0.395 0.605
38 H 0.057 0.943
39 H 0.064 0.936
40 H 0.018 0.982
41 H 0.058 0.942
42 H 0.269 0.731
43 H 0.085 0.915
44 H 0.017 0.983
45 H 0.045 0.955
46 H 0.057 0.943
47 H 0.051 0.949
48 H 0.072 0.928
49 H 0.054 0.946
50 H 0.030 0.970
51 H 0.404 0.596
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.317 3.892 -2.354 23.756
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.028 3.972
3 C -0.207 4.207
4 C 0.003 3.997
5 C -0.182 4.182
6 C -0.207 4.207
7 C 0.355 3.645
8 O -0.400 6.400
9 N -0.363 5.363
10 C 0.060 3.940
11 H 0.100 0.900
12 C -0.183 4.183
13 C 0.022 3.978
14 N -0.319 5.319
15 C -0.475 4.475
16 H 0.073 0.927
17 C -0.225 4.225
18 N -0.557 5.557
19 Si 0.893 3.107
20 H -0.222 1.222
21 H -0.212 1.212
22 H -0.219 1.219
23 C 0.039 3.961
24 C -0.093 4.093
25 C -0.194 4.194
26 C -0.185 4.185
27 C 0.175 3.825
28 O -0.279 6.279
29 N -0.227 5.227
30 H 0.101 0.899
31 H 0.098 0.902
32 H 0.099 0.901
33 H 0.162 0.838
34 H 0.105 0.895
35 H 0.099 0.901
36 H 0.095 0.905
37 H 0.230 0.770
38 H 0.075 0.925
39 H 0.083 0.917
40 H 0.036 0.964
41 H 0.076 0.924
42 H 0.080 0.920
43 H 0.104 0.896
44 H 0.035 0.965
45 H 0.064 0.936
46 H 0.076 0.924
47 H 0.070 0.930
48 H 0.091 0.909
49 H 0.073 0.927
50 H 0.049 0.951
51 H 0.263 0.737
Dipole moment (debyes) X Y Z Total
from point charges -22.275 3.446 -2.397 22.667
hybrid contribution -0.710 0.116 -0.557 0.910
sum -22.985 3.563 -2.954 23.446
Atomic orbital electron populations
1.20796 0.88144 1.03922 1.03505 1.21173 0.96976 0.87075 0.91994
1.21773 0.93620 0.99612 1.05726 1.20281 0.93662 0.94231 0.91512
1.20956 1.00275 0.93016 1.03904 1.20953 0.95375 0.94062 1.10262
1.17752 0.85719 0.76482 0.84531 1.90827 1.68977 1.48850 1.31312
1.46354 1.08381 1.74011 1.07571 1.21026 0.76996 0.97328 0.98607
0.90048 1.22434 0.99270 0.95494 1.01081 1.20868 0.90145 0.96949
0.89798 1.44106 1.50210 1.12674 1.24886 1.19946 1.13015 0.92683
1.21866 0.92654 1.25787 0.94825 0.97259 1.04651 1.70750 1.42200
1.21124 1.21578 0.83574 0.75629 0.75169 0.76360 1.22201 1.21234
1.21925 1.20902 0.87670 0.86743 1.00804 1.21357 1.00062 0.94286
0.93624 1.21801 0.99677 0.96089 1.01858 1.21759 0.97432 1.01879
0.97440 1.19005 0.86323 0.84511 0.92663 1.84769 1.76613 1.32584
1.33935 1.67048 1.09133 1.30422 1.16078 0.89879 0.90217 0.90112
0.83823 0.89542 0.90114 0.90472 0.76952 0.92458 0.91712 0.96425
0.92368 0.91975 0.89648 0.96499 0.93635 0.92370 0.92976 0.90884
0.92723 0.95086 0.73745
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.62 10.16 36.01 0.37 -0.25 16
2 C 0.17 1.56 6.78 -82.53 -0.56 1.00 16
3 C -0.19 -1.58 9.41 -39.50 -0.37 -1.95 16
4 C 0.01 0.11 5.95 -103.93 -0.62 -0.50 16
5 C -0.13 -1.08 9.69 36.00 0.35 -0.73 16
6 C -0.20 -2.56 5.66 -104.69 -0.59 -3.15 16
7 C 0.57 8.55 5.38 -12.48 -0.07 8.49 16
8 O -0.52 -10.13 16.77 5.29 0.09 -10.04 16
9 N -0.71 -9.58 4.29 -54.81 -0.23 -9.82 16
10 C 0.16 2.69 1.57 -67.89 -0.11 2.58 16
11 H 0.08 1.54 7.57 -51.93 -0.39 1.14 16
12 C -0.14 -2.52 5.31 -26.61 -0.14 -2.66 16
13 C 0.15 3.14 6.52 -3.71 -0.02 3.11 16
14 N -0.60 -14.15 2.30 -172.58 -0.40 -14.55 16
15 C -0.35 -9.25 9.49 -15.06 -0.14 -9.40 16
16 H 0.06 1.50 7.94 -52.49 -0.42 1.08 16
17 C -0.02 -0.64 4.68 -17.43 -0.08 -0.72 16
18 N -0.92 -26.66 12.41 55.49 0.69 -25.97 16
19 Si 1.06 24.61 29.99 -169.99 -5.10 19.52 16
20 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16
21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16
22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16
23 C 0.17 3.62 3.33 -3.93 -0.01 3.61 16
24 C -0.09 -1.52 0.56 -154.61 -0.09 -1.61 16
25 C -0.14 -1.95 8.31 37.16 0.31 -1.64 16
26 C -0.13 -2.04 7.82 37.16 0.29 -1.75 16
27 C 0.35 4.60 7.77 -16.61 -0.13 4.47 16
28 O -0.47 -5.98 13.01 -17.99 -0.23 -6.22 16
29 N -0.51 -6.18 10.28 -9.21 -0.09 -6.28 16
30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16
31 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16
32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16
33 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16
34 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16
35 H 0.08 0.49 8.10 -51.93 -0.42 0.06 16
36 H 0.08 0.77 7.19 -51.93 -0.37 0.39 16
37 H 0.40 4.49 6.65 -40.82 -0.27 4.22 16
38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
39 H 0.06 1.12 6.34 -51.93 -0.33 0.79 16
40 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16
41 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16
42 H 0.27 7.92 6.71 -40.82 -0.27 7.65 16
43 H 0.09 2.11 6.30 -51.93 -0.33 1.78 16
44 H 0.02 0.39 7.87 -51.93 -0.41 -0.02 16
45 H 0.04 0.54 7.36 -51.93 -0.38 0.16 16
46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16
47 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
48 H 0.07 1.33 5.97 -51.93 -0.31 1.02 16
49 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16
50 H 0.03 0.39 6.58 -51.93 -0.34 0.05 16
51 H 0.40 3.22 9.06 45.56 0.41 3.64 16
LS Contribution 401.59 15.07 6.05 6.05
Total: -1.00 -33.81 401.59 -8.12 -41.93
By element:
Atomic # 1 Polarization: 13.75 SS G_CDS: -7.27 Total: 6.48 kcal
Atomic # 6 Polarization: 0.52 SS G_CDS: -1.62 Total: -1.10 kcal
Atomic # 7 Polarization: -56.58 SS G_CDS: -0.04 Total: -56.62 kcal
Atomic # 8 Polarization: -16.11 SS G_CDS: -0.15 Total: -16.25 kcal
Atomic # 14 Polarization: 24.61 SS G_CDS: -5.10 Total: 19.52 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -33.81 -8.12 -41.93 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000940930233.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.769 kcal
(2) G-P(sol) polarization free energy of solvation -33.810 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.041 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.157 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.43 seconds