Wall clock time and date at job start Wed Apr 1 2020 04:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38347 * 119.40912 * 2 1 4 4 C 1.38338 * 119.45896 * 179.74795 * 3 2 1 5 5 C 1.50695 * 120.82692 * 180.25362 * 4 3 2 6 6 C 1.39986 * 118.34947 * 0.47454 * 4 3 2 7 7 C 1.47518 * 120.60205 * 179.80138 * 6 4 3 8 8 O 1.21590 * 120.00102 * 269.72434 * 7 6 4 9 9 N 1.34778 * 119.99897 * 89.71709 * 7 6 4 10 10 C 1.46504 * 120.00018 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.44877 * 34.96626 * 10 9 7 12 12 C 1.53045 * 109.45883 * 275.00421 * 10 9 7 13 13 C 1.53189 * 109.31183 * 178.61566 * 12 10 9 14 14 N 1.46933 * 108.77712 * 54.63310 * 13 12 10 15 15 C 1.36936 * 120.62939 * 126.36691 * 14 13 12 16 16 H 1.07995 * 120.00289 * 332.50485 * 15 14 13 17 17 C 1.38817 * 119.99502 * 152.50384 * 15 14 13 18 18 N 1.31612 * 120.00107 * 335.02596 * 17 15 14 19 19 Si 1.86801 * 119.99419 * 155.02751 * 17 15 14 20 20 H 1.48497 * 109.47275 * 90.00269 * 19 17 15 21 21 H 1.48502 * 109.46928 * 209.99622 * 19 17 15 22 22 H 1.48494 * 109.47235 * 329.99781 * 19 17 15 23 23 C 1.46930 * 118.73578 * 306.64412 * 14 13 12 24 24 C 1.52757 * 109.00623 * 53.30912 * 23 14 13 25 25 C 1.53002 * 109.56342 * 185.54745 * 24 23 14 26 26 C 1.53001 * 109.36264 * 65.49898 * 24 23 14 27 27 C 1.40281 * 118.80107 * 359.53139 * 6 4 3 28 28 O 1.35432 * 119.79676 * 180.25040 * 27 6 4 29 29 N 1.31884 * 119.40368 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.46753 * 270.01807 * 1 2 3 31 31 H 1.08998 * 109.47107 * 30.01307 * 1 2 3 32 32 H 1.08998 * 109.47231 * 150.02130 * 1 2 3 33 33 H 1.08003 * 120.27397 * 0.02562 * 3 2 1 34 34 H 1.08996 * 109.47501 * 270.22683 * 5 4 3 35 35 H 1.08997 * 109.47193 * 30.23087 * 5 4 3 36 36 H 1.09001 * 109.47255 * 150.22672 * 5 4 3 37 37 H 0.96999 * 119.99946 * 0.02562 * 9 7 6 38 38 H 1.08994 * 109.49993 * 58.66025 * 12 10 9 39 39 H 1.09001 * 109.52374 * 298.58317 * 12 10 9 40 40 H 1.09000 * 109.58791 * 294.84911 * 13 12 10 41 41 H 1.09003 * 109.70663 * 174.48983 * 13 12 10 42 42 H 0.96997 * 120.00247 * 354.26122 * 18 17 15 43 43 H 1.09001 * 109.58180 * 173.14154 * 23 14 13 44 44 H 1.08991 * 109.58526 * 293.56754 * 23 14 13 45 45 H 1.08999 * 109.47539 * 179.97438 * 25 24 23 46 46 H 1.08997 * 109.47556 * 299.96818 * 25 24 23 47 47 H 1.09007 * 109.46919 * 59.96544 * 25 24 23 48 48 H 1.09002 * 109.47061 * 300.15618 * 26 24 23 49 49 H 1.09006 * 109.47136 * 60.15349 * 26 24 23 50 50 H 1.08998 * 109.47171 * 180.15460 * 26 24 23 51 51 H 0.96700 * 113.99802 * 90.00111 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2064 0.0053 5 6 4.3408 2.5011 0.0112 6 6 4.2356 -0.0250 0.0003 7 6 5.7097 -0.0816 0.0012 8 8 6.3178 -0.1053 -1.0514 9 7 6.3823 -0.1070 1.1688 10 6 7.8463 -0.1627 1.1697 11 1 8.2319 0.4119 0.3276 12 6 8.3012 -1.6186 1.0445 13 6 9.8319 -1.6700 1.0110 14 7 10.3545 -0.9742 2.1949 15 6 11.2388 -1.5957 3.0357 16 1 11.2324 -2.6718 3.1265 17 6 12.1435 -0.8424 3.7713 18 7 12.5094 0.3476 3.3445 19 14 12.8415 -1.5179 5.3669 20 1 14.0856 -2.2767 5.0810 21 1 13.1479 -0.3942 6.2881 22 1 11.8461 -2.4197 6.0000 23 6 9.9055 0.3989 2.4628 24 6 8.3783 0.4290 2.4770 25 6 7.8956 1.8742 2.6171 26 6 7.8655 -0.3979 3.6578 27 6 3.4757 -1.2042 0.0002 28 8 4.0991 -2.4065 0.0006 29 7 2.1545 -1.1490 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3633 0.8899 -0.5140 32 1 -0.3633 -0.8901 -0.5135 33 1 1.6412 2.1375 0.0004 34 1 4.5272 2.8177 -1.0150 35 1 3.7619 3.2664 0.5281 36 1 5.2912 2.3557 0.5248 37 1 5.8972 -0.0883 2.0086 38 1 7.9026 -2.0465 0.1247 39 1 7.9366 -2.1889 1.8989 40 1 10.1944 -1.1781 0.1084 41 1 10.1651 -2.7079 1.0204 42 1 12.2130 0.6640 2.4768 43 1 10.2851 0.7250 3.4311 44 1 10.2740 1.0629 1.6810 45 1 6.8059 1.8940 2.6266 46 1 8.2747 2.2952 3.5482 47 1 8.2626 2.4629 1.7762 48 1 8.2110 -1.4269 3.5580 49 1 8.2447 0.0240 4.5887 50 1 6.7758 -0.3798 3.6680 51 1 4.2798 -2.7555 0.8841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940930233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:48 Heat of formation + Delta-G solvation = -56.251834 kcal Electronic energy + Delta-G solvation = -32305.761448 eV Core-core repulsion = 28204.475406 eV Total energy + Delta-G solvation = -4101.286043 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.17290 -41.10230 -39.54341 -38.47523 -36.53846 -35.33012 -34.35671 -33.92841 -32.80837 -31.13435 -29.44759 -28.49413 -28.24917 -27.78369 -26.61944 -24.69219 -23.86843 -22.68676 -22.47716 -21.52633 -19.98014 -19.55965 -19.47836 -18.62759 -18.20513 -17.43548 -16.71388 -16.37830 -16.24549 -15.81958 -15.50726 -15.45042 -15.25519 -15.21592 -14.98741 -14.81785 -14.31818 -14.20139 -14.06840 -13.98300 -13.94382 -13.61853 -13.26320 -13.04786 -13.01927 -12.91282 -12.82036 -12.70565 -12.63219 -12.55337 -12.47964 -12.16064 -11.89808 -11.82240 -11.72023 -11.45859 -11.42212 -11.11418 -10.63991 -10.52995 -10.45877 -10.14224 -9.87662 -8.92885 -8.23521 -5.37802 -0.31662 0.01266 1.37494 1.59725 1.66474 1.84176 1.97519 2.34009 2.51442 2.65963 3.22293 3.38092 3.49258 3.53369 3.57352 3.66779 3.83638 3.96712 3.97593 4.17965 4.21881 4.26944 4.30412 4.45515 4.49586 4.52180 4.57226 4.62641 4.69553 4.75229 4.79773 4.81721 4.87318 4.93422 4.94703 4.99420 5.00860 5.08674 5.11698 5.13005 5.17716 5.20153 5.26770 5.35351 5.40835 5.50833 5.59946 5.86151 6.36311 6.40097 6.43793 6.78514 7.05018 7.06416 7.78506 8.22722 9.01853 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.002735 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.919970 B =10234.429074 C =10530.209243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.161 3.839 3 C -0.175 4.175 4 C 0.009 3.991 5 C -0.125 4.125 6 C -0.222 4.222 7 C 0.581 3.419 8 O -0.574 6.574 9 N -0.694 5.694 10 C 0.177 3.823 11 H 0.056 0.944 12 C -0.127 4.127 13 C 0.146 3.854 14 N -0.609 5.609 15 C -0.348 4.348 16 H 0.050 0.950 17 C -0.073 4.073 18 N -0.942 5.942 19 Si 1.113 2.887 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.274 1.274 23 C 0.174 3.826 24 C -0.080 4.080 25 C -0.131 4.131 26 C -0.122 4.122 27 C 0.341 3.659 28 O -0.491 6.491 29 N -0.530 5.530 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.185 0.815 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.061 0.939 37 H 0.411 0.589 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.003 0.997 41 H 0.054 0.946 42 H 0.253 0.747 43 H 0.056 0.944 44 H -0.007 1.007 45 H 0.078 0.922 46 H 0.058 0.942 47 H 0.045 0.955 48 H 0.050 0.950 49 H 0.047 0.953 50 H 0.072 0.928 51 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.007 4.737 -1.077 27.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.024 3.976 3 C -0.194 4.194 4 C 0.001 3.999 5 C -0.181 4.181 6 C -0.228 4.228 7 C 0.367 3.633 8 O -0.453 6.453 9 N -0.345 5.345 10 C 0.072 3.928 11 H 0.074 0.926 12 C -0.167 4.167 13 C 0.020 3.980 14 N -0.333 5.333 15 C -0.477 4.477 16 H 0.068 0.932 17 C -0.269 4.269 18 N -0.584 5.584 19 Si 0.937 3.063 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.199 1.199 23 C 0.047 3.953 24 C -0.082 4.082 25 C -0.189 4.189 26 C -0.179 4.179 27 C 0.162 3.838 28 O -0.302 6.302 29 N -0.251 5.251 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.202 0.798 34 H 0.101 0.899 35 H 0.133 0.867 36 H 0.080 0.920 37 H 0.248 0.752 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.021 0.979 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.011 0.989 45 H 0.097 0.903 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.066 0.934 50 H 0.090 0.910 51 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -26.015 4.277 -1.099 26.387 hybrid contribution 0.371 -0.155 -1.047 1.122 sum -25.644 4.122 -2.146 26.062 Atomic orbital electron populations 1.20935 0.85485 1.04920 1.04823 1.21907 0.98709 0.86749 0.90276 1.22173 0.92753 1.00878 1.03584 1.20568 0.94722 0.93763 0.90868 1.21018 0.99955 0.93128 1.03991 1.20789 0.93478 0.95378 1.13200 1.18062 0.86725 0.74849 0.83702 1.90803 1.70311 1.51079 1.33062 1.46030 1.06808 1.73431 1.08219 1.20618 0.78823 0.95897 0.97418 0.92602 1.22225 0.96413 0.96656 1.01436 1.20930 0.92533 0.96169 0.88350 1.44290 1.50209 1.13287 1.25467 1.20166 1.13089 0.92673 1.21793 0.93226 1.27087 0.95355 0.97141 1.07323 1.70874 1.44003 1.22452 1.21120 0.82902 0.75654 0.74801 0.72906 1.21484 1.21552 1.19881 1.20752 0.91195 0.85167 0.98158 1.21152 0.96168 0.96612 0.94313 1.21762 1.01693 0.93726 1.01692 1.21687 0.99962 0.99948 0.96293 1.19116 0.86832 0.84400 0.93439 1.84720 1.76852 1.32987 1.35592 1.67123 1.08680 1.32056 1.17198 0.88212 0.87470 0.90885 0.79799 0.89866 0.86728 0.91979 0.75155 0.92549 0.90608 0.97874 0.92792 0.93728 0.92569 0.98927 0.90311 0.92262 0.93568 0.93133 0.93394 0.90954 0.72024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.16 71.24 0.72 -0.09 16 2 C 0.16 2.53 6.78 42.58 0.29 2.82 16 3 C -0.17 -2.23 9.41 22.32 0.21 -2.02 16 4 C 0.01 0.16 5.95 -19.42 -0.12 0.04 16 5 C -0.12 -1.80 9.69 71.23 0.69 -1.11 16 6 C -0.22 -5.39 5.66 -19.91 -0.11 -5.50 16 7 C 0.58 17.10 5.38 86.69 0.47 17.57 16 8 O -0.57 -22.60 16.77 -4.00 -0.07 -22.67 16 9 N -0.69 -17.81 4.29 -445.58 -1.91 -19.72 16 10 C 0.18 5.83 1.57 45.02 0.07 5.90 16 11 H 0.06 2.18 7.57 -2.39 -0.02 2.16 16 12 C -0.13 -4.56 5.31 30.67 0.16 -4.39 16 13 C 0.15 6.41 6.52 86.36 0.56 6.97 16 14 N -0.61 -30.02 2.30 -699.92 -1.61 -31.63 16 15 C -0.35 -19.06 9.49 84.03 0.80 -18.26 16 16 H 0.05 2.74 7.94 -2.91 -0.02 2.72 16 17 C -0.07 -4.07 4.68 84.86 0.40 -3.67 16 18 N -0.94 -56.77 12.41 21.65 0.27 -56.50 16 19 Si 1.11 50.13 29.99 68.60 2.06 52.19 16 20 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 C 0.17 7.90 3.33 86.22 0.29 8.19 16 24 C -0.08 -2.67 0.56 -52.25 -0.03 -2.70 16 25 C -0.13 -3.56 8.31 71.98 0.60 -2.96 16 26 C -0.12 -3.69 7.82 71.98 0.56 -3.13 16 27 C 0.34 8.53 7.77 85.13 0.66 9.19 16 28 O -0.49 -12.35 13.01 -87.28 -1.14 -13.49 16 29 N -0.53 -12.04 10.28 -296.06 -3.04 -15.08 16 30 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.27 8.07 -2.39 -0.02 0.25 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.11 0.85 8.10 -2.39 -0.02 0.83 16 36 H 0.06 1.09 7.19 -2.39 -0.02 1.07 16 37 H 0.41 8.20 6.65 -92.71 -0.62 7.58 16 38 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.08 2.57 6.34 -2.39 -0.02 2.55 16 40 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.05 2.36 7.93 -2.39 -0.02 2.34 16 42 H 0.25 15.68 6.71 -92.71 -0.62 15.05 16 43 H 0.06 2.89 6.30 -2.39 -0.02 2.87 16 44 H -0.01 -0.36 7.87 -2.39 -0.02 -0.37 16 45 H 0.08 1.62 7.36 -2.39 -0.02 1.61 16 46 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 48 H 0.05 1.78 5.97 -2.39 -0.01 1.77 16 49 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 50 H 0.07 1.58 6.58 -2.39 -0.02 1.57 16 51 H 0.42 6.50 9.06 -74.06 -0.67 5.82 16 Total: -1.00 -78.01 401.59 0.61 -77.41 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -0.18 Total: 22.65 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 6.22 Total: 6.84 kcal Atomic # 7 Polarization: -116.64 SS G_CDS: -6.29 Total: -122.94 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.20 Total: -36.15 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 2.06 Total: 52.19 kcal Total: -78.01 0.61 -77.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940930233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.158 kcal (2) G-P(sol) polarization free energy of solvation -78.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds