Wall clock time and date at job start Wed Apr 1 2020 05:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40198 * 120.36924 * 2 1 4 4 C 1.35350 * 119.94412 * 179.76851 * 3 2 1 5 5 N 1.35761 * 120.70376 * 0.51935 * 4 3 2 6 6 C 1.46501 * 119.62033 * 179.75653 * 5 4 3 7 7 C 1.50702 * 109.47259 * 269.72322 * 6 5 4 8 8 O 1.21279 * 119.99709 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99772 * 180.02562 * 7 6 5 10 10 C 1.46508 * 119.99751 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.45589 * 34.97384 * 10 9 7 12 12 C 1.53033 * 109.45913 * 275.00068 * 10 9 7 13 13 C 1.53190 * 109.31319 * 178.62685 * 12 10 9 14 14 N 1.46934 * 108.77344 * 54.63701 * 13 12 10 15 15 C 1.36930 * 120.62856 * 126.37025 * 14 13 12 16 16 H 1.08007 * 119.99637 * 210.92377 * 15 14 13 17 17 C 1.38811 * 120.00464 * 30.92787 * 15 14 13 18 18 N 1.31617 * 120.00058 * 198.61006 * 17 15 14 19 19 Si 1.86797 * 119.99847 * 18.60731 * 17 15 14 20 20 H 1.48500 * 109.47275 * 270.00087 * 19 17 15 21 21 H 1.48498 * 109.47305 * 29.99955 * 19 17 15 22 22 H 1.48504 * 109.47120 * 150.00092 * 19 17 15 23 23 C 1.46923 * 118.73407 * 306.64174 * 14 13 12 24 24 C 1.52761 * 109.00851 * 53.31126 * 23 14 13 25 25 C 1.53004 * 109.56260 * 185.54884 * 24 23 14 26 26 C 1.52997 * 109.36030 * 65.49766 * 24 23 14 27 27 C 1.34657 * 120.75120 * 359.48278 * 5 4 3 28 28 O 1.22058 * 119.98631 * 180.27770 * 27 5 4 29 29 C 1.36404 * 120.36400 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46870 * 269.97463 * 1 2 3 31 31 H 1.09002 * 109.47109 * 29.97026 * 1 2 3 32 32 H 1.08994 * 109.47227 * 149.97240 * 1 2 3 33 33 H 1.07996 * 120.02698 * 0.05471 * 3 2 1 34 34 H 1.07999 * 119.64341 * 180.27662 * 4 3 2 35 35 H 1.09000 * 109.46650 * 149.72546 * 6 5 4 36 36 H 1.08998 * 109.47221 * 29.72943 * 6 5 4 37 37 H 0.96997 * 120.00456 * 359.97438 * 9 7 6 38 38 H 1.08999 * 109.50261 * 58.67320 * 12 10 9 39 39 H 1.09003 * 109.52548 * 298.59802 * 12 10 9 40 40 H 1.08995 * 109.58656 * 294.84908 * 13 12 10 41 41 H 1.08999 * 109.58870 * 174.42181 * 13 12 10 42 42 H 0.96999 * 120.00149 * 354.94573 * 18 17 15 43 43 H 1.08998 * 109.58630 * 173.14897 * 23 14 13 44 44 H 1.09005 * 109.58563 * 293.57056 * 23 14 13 45 45 H 1.09002 * 109.47175 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.47189 * 299.96842 * 25 24 23 47 47 H 1.09005 * 109.46889 * 59.96726 * 25 24 23 48 48 H 1.08997 * 109.47341 * 300.16041 * 26 24 23 49 49 H 1.09005 * 109.47224 * 60.15973 * 26 24 23 50 50 H 1.08999 * 109.47541 * 180.15549 * 26 24 23 51 51 H 1.07995 * 120.34627 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5693 1.1996 0.0047 5 7 4.2538 0.0272 -0.0011 6 6 5.7187 0.0441 -0.0011 7 6 6.2210 0.0499 -1.4220 8 8 5.4329 0.0414 -2.3437 9 7 7.5460 0.0647 -1.6683 10 6 8.0342 0.0709 -3.0496 11 1 7.3548 0.6530 -3.6722 12 6 8.1014 -1.3655 -3.5731 13 6 8.5795 -1.3526 -5.0284 14 7 9.8532 -0.6236 -5.1012 15 6 10.9542 -1.1988 -5.6773 16 1 11.9430 -0.9448 -5.3246 17 6 10.7997 -2.1081 -6.7147 18 7 11.7828 -2.9266 -7.0242 19 14 9.1964 -2.1701 -7.6712 20 1 8.2693 -3.1313 -7.0217 21 1 8.5777 -0.8203 -7.6884 22 1 9.4676 -2.6081 -9.0641 23 6 9.9244 0.7319 -4.5387 24 6 9.4297 0.6976 -3.0939 25 6 9.3675 2.1224 -2.5397 26 6 10.3920 -0.1385 -2.2479 27 6 3.6017 -1.1509 -0.0012 28 8 4.2311 -2.1967 -0.0013 29 6 2.1965 -1.1769 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6823 2.1486 0.0009 34 1 4.1104 2.1342 0.0092 35 1 6.0922 -0.8417 0.5126 36 1 6.0718 0.9381 0.5128 37 1 8.1763 0.0719 -0.9311 38 1 7.1117 -1.8191 -3.5193 39 1 8.7992 -1.9423 -2.9660 40 1 7.8373 -0.8547 -5.6524 41 1 8.7239 -2.3759 -5.3747 42 1 12.6400 -2.8458 -6.5776 43 1 10.9559 1.0834 -4.5621 44 1 9.2941 1.4031 -5.1221 45 1 9.0139 2.0963 -1.5090 46 1 10.3616 2.5683 -2.5715 47 1 8.6828 2.7176 -3.1439 48 1 10.4369 -1.1528 -2.6443 49 1 11.3858 0.3083 -2.2798 50 1 10.0393 -0.1665 -1.2170 51 1 1.6682 -2.1188 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941072290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:42 Heat of formation + Delta-G solvation = -16.772947 kcal Electronic energy + Delta-G solvation = -31788.381899 eV Core-core repulsion = 27688.807790 eV Total energy + Delta-G solvation = -4099.574110 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -41.70160 -40.10216 -38.34903 -37.20045 -35.50058 -34.84879 -33.31021 -31.85533 -30.97938 -30.15868 -29.51058 -27.33363 -27.04308 -26.27985 -24.56271 -23.95136 -22.31236 -21.75908 -21.07084 -20.45943 -18.77528 -17.77653 -17.65149 -17.56923 -17.14368 -16.26181 -15.91407 -15.48350 -15.19082 -14.65689 -14.48323 -14.39592 -14.25624 -14.13129 -13.96199 -13.72711 -13.64656 -13.46732 -13.03754 -12.84457 -12.68041 -12.48497 -12.32234 -12.17556 -12.02352 -11.89546 -11.76790 -11.43246 -11.40629 -11.25395 -10.92483 -10.52778 -10.41740 -10.35874 -10.12784 -10.02269 -9.88520 -9.72197 -9.60306 -9.15071 -8.82197 -8.49271 -8.18184 -7.03743 -6.22306 -3.34652 0.58721 1.67378 2.23750 2.49305 3.10881 3.45760 3.52774 3.57192 3.72572 4.20059 4.30656 4.43060 4.54617 4.60131 4.70906 4.79856 4.89243 4.93655 4.94961 5.06310 5.17262 5.19255 5.21007 5.27253 5.45557 5.49537 5.65398 5.67093 5.69092 5.76004 5.81430 5.83920 5.95244 6.04190 6.10904 6.12049 6.19490 6.27073 6.27451 6.34386 6.43045 6.58498 6.61670 6.68805 6.71817 6.72535 6.84170 6.96583 7.45110 7.87758 8.03179 8.13649 8.45803 9.06454 9.60663 10.21259 11.15547 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016029 B = 0.002743 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.452372 B =10203.959369 C =11061.577563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.014 3.986 3 C -0.230 4.230 4 C 0.145 3.855 5 N -0.481 5.481 6 C 0.069 3.931 7 C 0.498 3.502 8 O -0.526 6.526 9 N -0.715 5.715 10 C 0.165 3.835 11 H 0.083 0.917 12 C -0.145 4.145 13 C 0.128 3.872 14 N -0.601 5.601 15 C -0.342 4.342 16 H 0.065 0.935 17 C -0.014 4.014 18 N -0.922 5.922 19 Si 1.064 2.936 20 H -0.293 1.293 21 H -0.284 1.284 22 H -0.300 1.300 23 C 0.160 3.840 24 C -0.090 4.090 25 C -0.135 4.135 26 C -0.132 4.132 27 C 0.521 3.479 28 O -0.549 6.549 29 C -0.247 4.247 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.160 0.840 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.397 0.603 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.076 0.924 42 H 0.262 0.738 43 H 0.063 0.937 44 H 0.022 0.978 45 H 0.047 0.953 46 H 0.056 0.944 47 H 0.052 0.948 48 H 0.075 0.925 49 H 0.051 0.949 50 H 0.035 0.965 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.253 13.296 19.778 29.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 C -0.254 4.254 4 C 0.018 3.982 5 N -0.192 5.192 6 C -0.057 4.057 7 C 0.282 3.718 8 O -0.402 6.402 9 N -0.367 5.367 10 C 0.062 3.938 11 H 0.101 0.899 12 C -0.185 4.185 13 C 0.002 3.998 14 N -0.325 5.325 15 C -0.471 4.471 16 H 0.082 0.918 17 C -0.215 4.215 18 N -0.561 5.561 19 Si 0.896 3.104 20 H -0.221 1.221 21 H -0.211 1.211 22 H -0.228 1.228 23 C 0.033 3.967 24 C -0.092 4.092 25 C -0.193 4.193 26 C -0.189 4.189 27 C 0.324 3.676 28 O -0.431 6.431 29 C -0.268 4.268 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.162 0.838 34 H 0.177 0.823 35 H 0.147 0.853 36 H 0.137 0.863 37 H 0.233 0.767 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.040 0.960 45 H 0.066 0.934 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.070 0.930 50 H 0.054 0.946 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.141 11.783 17.875 28.062 hybrid contribution 1.142 0.922 1.587 2.162 sum -16.999 12.705 19.463 28.795 Atomic orbital electron populations 1.20923 0.90380 1.03628 1.02979 1.20200 0.96761 0.92665 0.89349 1.20504 0.92336 0.98899 1.13618 1.21865 0.93617 0.89449 0.93266 1.45023 1.07153 1.07292 1.59682 1.21823 0.79837 1.07130 0.96875 1.20591 0.83270 0.77118 0.90850 1.90762 1.55179 1.48696 1.45575 1.46210 1.06027 1.74485 1.10014 1.20980 0.94663 0.97458 0.80703 0.89920 1.22460 1.00869 0.95600 0.99574 1.21353 0.87958 0.97480 0.93044 1.44325 1.08558 1.11124 1.68488 1.20174 0.86335 1.26392 1.14155 0.91770 1.26216 1.05035 0.94772 0.95520 1.70908 1.04387 1.33781 1.47047 0.83768 0.74791 0.75849 0.75969 1.22134 1.21065 1.22784 1.20866 0.99114 0.87643 0.89044 1.21291 0.93918 0.94474 0.99552 1.21798 1.01590 0.95985 0.99965 1.21801 0.98194 1.02026 0.96905 1.17092 0.89369 0.82445 0.78708 1.90974 1.69098 1.30229 1.52783 1.21925 0.92252 0.99589 1.13066 0.90169 0.90763 0.90791 0.83776 0.82262 0.85348 0.86277 0.76748 0.92347 0.91289 0.95484 0.90591 0.92745 0.91820 0.96009 0.93355 0.92520 0.92905 0.90566 0.92958 0.94574 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.03 36.01 0.36 -0.31 16 2 C 0.01 0.12 5.89 -104.55 -0.62 -0.50 16 3 C -0.23 -1.69 9.71 -39.88 -0.39 -2.07 16 4 C 0.14 1.14 10.28 -16.84 -0.17 0.97 16 5 N -0.48 -5.30 2.07 -121.06 -0.25 -5.55 16 6 C 0.07 0.65 5.82 -5.19 -0.03 0.62 16 7 C 0.50 6.68 7.86 -10.99 -0.09 6.59 16 8 O -0.53 -9.48 16.09 5.56 0.09 -9.39 16 9 N -0.72 -8.92 4.29 -53.77 -0.23 -9.15 16 10 C 0.17 2.64 1.57 -67.89 -0.11 2.53 16 11 H 0.08 1.48 7.58 -51.93 -0.39 1.08 16 12 C -0.14 -2.76 5.31 -26.62 -0.14 -2.90 16 13 C 0.13 2.87 4.21 -3.71 -0.02 2.86 16 14 N -0.60 -14.11 2.17 -172.58 -0.37 -14.48 16 15 C -0.34 -9.42 9.88 -15.06 -0.15 -9.57 16 16 H 0.06 1.88 8.06 -52.48 -0.42 1.46 16 17 C -0.01 -0.40 5.24 -17.43 -0.09 -0.49 16 18 N -0.92 -28.66 13.70 55.49 0.76 -27.90 16 19 Si 1.06 27.14 24.73 -169.99 -4.20 22.93 16 20 H -0.29 -7.18 6.56 56.52 0.37 -6.81 16 21 H -0.28 -6.97 6.80 56.52 0.38 -6.58 16 22 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 23 C 0.16 3.09 5.15 -3.93 -0.02 3.07 16 24 C -0.09 -1.36 0.56 -154.61 -0.09 -1.44 16 25 C -0.14 -1.60 8.31 37.16 0.31 -1.29 16 26 C -0.13 -1.96 7.82 37.16 0.29 -1.67 16 27 C 0.52 7.43 7.40 -15.45 -0.11 7.31 16 28 O -0.55 -9.95 16.64 4.87 0.08 -9.87 16 29 C -0.25 -2.85 9.65 -39.38 -0.38 -3.23 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 32 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.16 0.68 8.03 -52.49 -0.42 0.26 16 35 H 0.13 1.23 7.39 -51.93 -0.38 0.85 16 36 H 0.12 0.54 8.01 -51.93 -0.42 0.13 16 37 H 0.40 3.82 6.66 -40.82 -0.27 3.54 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.07 1.32 6.34 -51.93 -0.33 0.99 16 40 H 0.03 0.61 7.10 -51.93 -0.37 0.24 16 41 H 0.08 1.87 4.76 -51.93 -0.25 1.62 16 42 H 0.26 8.06 8.73 -40.82 -0.36 7.70 16 43 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.47 7.36 -51.93 -0.38 0.08 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.08 1.40 5.97 -51.93 -0.31 1.09 16 49 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.04 0.42 6.58 -51.93 -0.34 0.08 16 51 H 0.15 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 396.49 15.07 5.98 5.98 Total: -1.00 -37.39 396.49 -7.71 -45.10 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -8.12 Total: 1.86 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -1.44 Total: 0.46 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.09 Total: -57.07 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.17 Total: -19.26 kcal Atomic # 14 Polarization: 27.14 SS G_CDS: -4.20 Total: 22.93 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.39 -7.71 -45.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941072290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.331 kcal (2) G-P(sol) polarization free energy of solvation -37.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds