Wall clock time and date at job start Wed Apr 1 2020 05:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40198 * 120.36924 * 2 1 4 4 C 1.35350 * 119.94412 * 179.76851 * 3 2 1 5 5 N 1.35761 * 120.70376 * 0.51935 * 4 3 2 6 6 C 1.46501 * 119.62033 * 179.75653 * 5 4 3 7 7 C 1.50702 * 109.47259 * 269.72322 * 6 5 4 8 8 O 1.21279 * 119.99709 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99772 * 180.02562 * 7 6 5 10 10 C 1.46508 * 119.99751 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.45589 * 34.97384 * 10 9 7 12 12 C 1.53033 * 109.45913 * 275.00068 * 10 9 7 13 13 C 1.53190 * 109.31319 * 178.62685 * 12 10 9 14 14 N 1.46934 * 108.77344 * 54.63701 * 13 12 10 15 15 C 1.36930 * 120.62856 * 126.37025 * 14 13 12 16 16 H 1.08007 * 119.99637 * 210.92377 * 15 14 13 17 17 C 1.38811 * 120.00464 * 30.92787 * 15 14 13 18 18 N 1.31617 * 120.00058 * 198.61006 * 17 15 14 19 19 Si 1.86797 * 119.99847 * 18.60731 * 17 15 14 20 20 H 1.48500 * 109.47275 * 270.00087 * 19 17 15 21 21 H 1.48498 * 109.47305 * 29.99955 * 19 17 15 22 22 H 1.48504 * 109.47120 * 150.00092 * 19 17 15 23 23 C 1.46923 * 118.73407 * 306.64174 * 14 13 12 24 24 C 1.52761 * 109.00851 * 53.31126 * 23 14 13 25 25 C 1.53004 * 109.56260 * 185.54884 * 24 23 14 26 26 C 1.52997 * 109.36030 * 65.49766 * 24 23 14 27 27 C 1.34657 * 120.75120 * 359.48278 * 5 4 3 28 28 O 1.22058 * 119.98631 * 180.27770 * 27 5 4 29 29 C 1.36404 * 120.36400 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46870 * 269.97463 * 1 2 3 31 31 H 1.09002 * 109.47109 * 29.97026 * 1 2 3 32 32 H 1.08994 * 109.47227 * 149.97240 * 1 2 3 33 33 H 1.07996 * 120.02698 * 0.05471 * 3 2 1 34 34 H 1.07999 * 119.64341 * 180.27662 * 4 3 2 35 35 H 1.09000 * 109.46650 * 149.72546 * 6 5 4 36 36 H 1.08998 * 109.47221 * 29.72943 * 6 5 4 37 37 H 0.96997 * 120.00456 * 359.97438 * 9 7 6 38 38 H 1.08999 * 109.50261 * 58.67320 * 12 10 9 39 39 H 1.09003 * 109.52548 * 298.59802 * 12 10 9 40 40 H 1.08995 * 109.58656 * 294.84908 * 13 12 10 41 41 H 1.08999 * 109.58870 * 174.42181 * 13 12 10 42 42 H 0.96999 * 120.00149 * 354.94573 * 18 17 15 43 43 H 1.08998 * 109.58630 * 173.14897 * 23 14 13 44 44 H 1.09005 * 109.58563 * 293.57056 * 23 14 13 45 45 H 1.09002 * 109.47175 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.47189 * 299.96842 * 25 24 23 47 47 H 1.09005 * 109.46889 * 59.96726 * 25 24 23 48 48 H 1.08997 * 109.47341 * 300.16041 * 26 24 23 49 49 H 1.09005 * 109.47224 * 60.15973 * 26 24 23 50 50 H 1.08999 * 109.47541 * 180.15549 * 26 24 23 51 51 H 1.07995 * 120.34627 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5693 1.1996 0.0047 5 7 4.2538 0.0272 -0.0011 6 6 5.7187 0.0441 -0.0011 7 6 6.2210 0.0499 -1.4220 8 8 5.4329 0.0414 -2.3437 9 7 7.5460 0.0647 -1.6683 10 6 8.0342 0.0709 -3.0496 11 1 7.3548 0.6530 -3.6722 12 6 8.1014 -1.3655 -3.5731 13 6 8.5795 -1.3526 -5.0284 14 7 9.8532 -0.6236 -5.1012 15 6 10.9542 -1.1988 -5.6773 16 1 11.9430 -0.9448 -5.3246 17 6 10.7997 -2.1081 -6.7147 18 7 11.7828 -2.9266 -7.0242 19 14 9.1964 -2.1701 -7.6712 20 1 8.2693 -3.1313 -7.0217 21 1 8.5777 -0.8203 -7.6884 22 1 9.4676 -2.6081 -9.0641 23 6 9.9244 0.7319 -4.5387 24 6 9.4297 0.6976 -3.0939 25 6 9.3675 2.1224 -2.5397 26 6 10.3920 -0.1385 -2.2479 27 6 3.6017 -1.1509 -0.0012 28 8 4.2311 -2.1967 -0.0013 29 6 2.1965 -1.1769 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6823 2.1486 0.0009 34 1 4.1104 2.1342 0.0092 35 1 6.0922 -0.8417 0.5126 36 1 6.0718 0.9381 0.5128 37 1 8.1763 0.0719 -0.9311 38 1 7.1117 -1.8191 -3.5193 39 1 8.7992 -1.9423 -2.9660 40 1 7.8373 -0.8547 -5.6524 41 1 8.7239 -2.3759 -5.3747 42 1 12.6400 -2.8458 -6.5776 43 1 10.9559 1.0834 -4.5621 44 1 9.2941 1.4031 -5.1221 45 1 9.0139 2.0963 -1.5090 46 1 10.3616 2.5683 -2.5715 47 1 8.6828 2.7176 -3.1439 48 1 10.4369 -1.1528 -2.6443 49 1 11.3858 0.3083 -2.2798 50 1 10.0393 -0.1665 -1.2170 51 1 1.6682 -2.1188 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941072290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:40 Heat of formation + Delta-G solvation = -42.946500 kcal Electronic energy + Delta-G solvation = -31789.516870 eV Core-core repulsion = 27688.807790 eV Total energy + Delta-G solvation = -4100.709080 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.53980 -41.33583 -39.65285 -38.10631 -36.59912 -36.17612 -34.65134 -33.77221 -32.20571 -31.20191 -30.38084 -28.27953 -28.10407 -27.76089 -26.16094 -24.65158 -23.82959 -22.86937 -22.61033 -21.58864 -20.01076 -19.50320 -18.54646 -18.47195 -18.43208 -17.28700 -17.00528 -16.54722 -16.37912 -16.14959 -16.00980 -15.60329 -15.47180 -15.27815 -15.15453 -15.10105 -14.70873 -14.34515 -14.16246 -14.02127 -13.90661 -13.60289 -13.38203 -13.28733 -13.01685 -12.91028 -12.87945 -12.74319 -12.70438 -12.50056 -12.46547 -12.05608 -11.86079 -11.69770 -11.55771 -11.39504 -11.29520 -11.19828 -11.09092 -10.68468 -10.54327 -10.09497 -9.11771 -8.98158 -8.46906 -5.57537 -0.11643 0.92433 1.38307 1.43611 1.48253 1.49991 1.66573 2.14491 2.47893 2.69867 3.05905 3.33486 3.54781 3.61322 3.67805 3.75236 3.80464 3.89618 3.96521 4.08967 4.17401 4.17744 4.28295 4.34431 4.40369 4.43326 4.46338 4.67787 4.72958 4.78699 4.81075 4.82793 4.85590 4.88453 4.90343 4.96084 5.05139 5.10838 5.12152 5.16326 5.22939 5.24793 5.37569 5.43975 5.49399 5.59982 5.66870 5.78953 6.05799 6.26237 6.44645 6.88176 6.97317 7.14081 7.54119 8.06578 8.86283 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016029 B = 0.002743 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.452372 B =10203.959369 C =11061.577563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.033 3.967 3 C -0.232 4.232 4 C 0.142 3.858 5 N -0.483 5.483 6 C 0.073 3.927 7 C 0.497 3.503 8 O -0.576 6.576 9 N -0.701 5.701 10 C 0.178 3.822 11 H 0.069 0.931 12 C -0.136 4.136 13 C 0.125 3.875 14 N -0.613 5.613 15 C -0.317 4.317 16 H 0.039 0.961 17 C -0.068 4.068 18 N -0.959 5.959 19 Si 1.100 2.900 20 H -0.284 1.284 21 H -0.269 1.269 22 H -0.305 1.305 23 C 0.153 3.847 24 C -0.078 4.078 25 C -0.128 4.128 26 C -0.128 4.128 27 C 0.501 3.499 28 O -0.613 6.613 29 C -0.296 4.296 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.184 0.816 34 H 0.207 0.793 35 H 0.125 0.875 36 H 0.183 0.817 37 H 0.416 0.584 38 H 0.046 0.954 39 H 0.065 0.935 40 H 0.029 0.971 41 H 0.049 0.951 42 H 0.250 0.750 43 H 0.058 0.942 44 H 0.028 0.972 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.054 0.946 48 H 0.034 0.966 49 H 0.053 0.947 50 H 0.075 0.925 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.346 17.586 22.591 34.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.029 3.971 3 C -0.254 4.254 4 C 0.016 3.984 5 N -0.192 5.192 6 C -0.052 4.052 7 C 0.283 3.717 8 O -0.455 6.455 9 N -0.354 5.354 10 C 0.073 3.927 11 H 0.087 0.913 12 C -0.176 4.176 13 C 0.000 4.000 14 N -0.337 5.337 15 C -0.447 4.447 16 H 0.057 0.943 17 C -0.263 4.263 18 N -0.602 5.602 19 Si 0.927 3.073 20 H -0.211 1.211 21 H -0.194 1.194 22 H -0.233 1.233 23 C 0.027 3.973 24 C -0.080 4.080 25 C -0.186 4.186 26 C -0.186 4.186 27 C 0.307 3.693 28 O -0.501 6.501 29 C -0.317 4.317 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.201 0.799 34 H 0.223 0.777 35 H 0.143 0.857 36 H 0.200 0.800 37 H 0.254 0.746 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.046 0.954 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.099 0.901 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.054 0.946 49 H 0.072 0.928 50 H 0.094 0.906 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.249 16.155 20.760 33.197 hybrid contribution 1.747 -0.273 0.783 1.933 sum -18.503 15.882 21.543 32.538 Atomic orbital electron populations 1.21040 0.88092 1.04469 1.04364 1.20649 0.98487 0.92153 0.85776 1.21068 0.92565 0.99690 1.12086 1.22736 0.94377 0.89695 0.91576 1.45067 1.07980 1.07424 1.58695 1.22045 0.79057 1.09996 0.94117 1.21295 0.82777 0.75485 0.92100 1.90749 1.56366 1.50820 1.47544 1.45918 1.06442 1.74040 1.08952 1.20591 0.95024 0.94656 0.82460 0.91289 1.22296 0.99693 0.98220 0.97395 1.21291 0.87563 0.95870 0.95316 1.44373 1.07637 1.13051 1.68669 1.20066 0.86726 1.25074 1.12845 0.94291 1.27186 1.06906 0.95318 0.96894 1.71000 1.04613 1.35965 1.48653 0.83285 0.72518 0.76840 0.74615 1.21097 1.19370 1.23327 1.21100 0.99339 0.85130 0.91696 1.21125 0.92952 0.97190 0.96770 1.21748 1.02519 0.92739 1.01560 1.21751 0.98558 0.99415 0.98852 1.17508 0.90298 0.82775 0.78744 1.90914 1.70256 1.32383 1.56571 1.21886 0.91683 1.00775 1.17363 0.88285 0.88691 0.91186 0.79927 0.77658 0.85683 0.80014 0.74586 0.93517 0.91666 0.95354 0.93243 0.94062 0.92321 0.95390 0.90133 0.91614 0.92707 0.94646 0.92808 0.90636 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 10.03 71.24 0.71 -0.30 16 2 C 0.03 0.51 5.89 -19.82 -0.12 0.39 16 3 C -0.23 -2.42 9.71 22.08 0.21 -2.20 16 4 C 0.14 1.61 10.28 83.42 0.86 2.47 16 5 N -0.48 -9.53 2.07 -655.07 -1.36 -10.89 16 6 C 0.07 1.12 5.82 85.63 0.50 1.62 16 7 C 0.50 12.04 7.86 87.66 0.69 12.73 16 8 O -0.58 -20.02 16.09 -3.03 -0.05 -20.07 16 9 N -0.70 -15.22 4.29 -442.41 -1.90 -17.12 16 10 C 0.18 5.33 1.57 45.01 0.07 5.40 16 11 H 0.07 2.33 7.58 -2.39 -0.02 2.32 16 12 C -0.14 -5.19 5.31 30.67 0.16 -5.03 16 13 C 0.13 5.71 4.21 86.36 0.36 6.07 16 14 N -0.61 -29.01 2.17 -699.92 -1.52 -30.52 16 15 C -0.32 -18.00 9.88 84.03 0.83 -17.17 16 16 H 0.04 2.39 8.06 -2.91 -0.02 2.36 16 17 C -0.07 -4.08 5.24 84.86 0.44 -3.63 16 18 N -0.96 -62.09 13.70 21.65 0.30 -61.79 16 19 Si 1.10 56.33 24.73 68.60 1.70 58.02 16 20 H -0.28 -13.94 6.56 99.48 0.65 -13.29 16 21 H -0.27 -12.87 6.80 99.48 0.68 -12.20 16 22 H -0.30 -15.76 7.11 99.48 0.71 -15.06 16 23 C 0.15 5.73 5.15 86.22 0.44 6.17 16 24 C -0.08 -2.16 0.56 -52.25 -0.03 -2.19 16 25 C -0.13 -2.42 8.31 71.98 0.60 -1.82 16 26 C -0.13 -3.53 7.82 71.98 0.56 -2.97 16 27 C 0.50 14.53 7.40 84.82 0.63 15.16 16 28 O -0.61 -23.59 16.64 -5.51 -0.09 -23.68 16 29 C -0.30 -7.02 9.65 22.40 0.22 -6.80 16 30 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 0.43 8.10 -2.39 -0.02 0.41 16 32 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 33 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 34 H 0.21 0.34 8.03 -2.91 -0.02 0.31 16 35 H 0.13 2.13 7.39 -2.39 -0.02 2.11 16 36 H 0.18 0.45 8.01 -2.39 -0.02 0.43 16 37 H 0.42 6.05 6.66 -92.71 -0.62 5.43 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.06 2.53 6.34 -2.39 -0.02 2.51 16 40 H 0.03 1.29 7.10 -2.39 -0.02 1.27 16 41 H 0.05 2.50 4.76 -2.39 -0.01 2.49 16 42 H 0.25 16.16 8.73 -92.71 -0.81 15.35 16 43 H 0.06 2.24 7.93 -2.39 -0.02 2.22 16 44 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 45 H 0.08 1.05 7.36 -2.39 -0.02 1.03 16 46 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 48 H 0.03 1.27 5.97 -2.39 -0.01 1.25 16 49 H 0.05 1.46 8.14 -2.38 -0.02 1.45 16 50 H 0.07 1.46 6.58 -2.39 -0.02 1.44 16 51 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -90.84 396.49 4.43 -86.41 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.20 Total: 11.74 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 7.15 Total: 7.90 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -4.47 Total: -120.32 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -0.14 Total: -43.75 kcal Atomic # 14 Polarization: 56.33 SS G_CDS: 1.70 Total: 58.02 kcal Total: -90.84 4.43 -86.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941072290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.467 kcal (2) G-P(sol) polarization free energy of solvation -90.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds