Wall clock time and date at job start Wed Apr 1 2020 05:31:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.40198 * 120.36924 * 2 1
4 4 C 1.35350 * 119.94412 * 179.76851 * 3 2 1
5 5 N 1.35761 * 120.70376 * 0.51935 * 4 3 2
6 6 C 1.46501 * 119.62033 * 179.75653 * 5 4 3
7 7 C 1.50702 * 109.47259 * 269.72322 * 6 5 4
8 8 O 1.21279 * 119.99709 * 0.02562 * 7 6 5
9 9 N 1.34774 * 119.99772 * 180.02562 * 7 6 5
10 10 C 1.46508 * 119.99751 * 180.02562 * 9 7 6
11 11 H 1.09001 * 109.45589 * 34.97384 * 10 9 7
12 12 C 1.53033 * 109.45913 * 275.00068 * 10 9 7
13 13 C 1.53190 * 109.31319 * 178.62685 * 12 10 9
14 14 N 1.46934 * 108.77344 * 54.63701 * 13 12 10
15 15 C 1.36930 * 120.62856 * 126.37025 * 14 13 12
16 16 H 1.08007 * 119.99637 * 210.92377 * 15 14 13
17 17 C 1.38811 * 120.00464 * 30.92787 * 15 14 13
18 18 N 1.31617 * 120.00058 * 198.61006 * 17 15 14
19 19 Si 1.86797 * 119.99847 * 18.60731 * 17 15 14
20 20 H 1.48500 * 109.47275 * 270.00087 * 19 17 15
21 21 H 1.48498 * 109.47305 * 29.99955 * 19 17 15
22 22 H 1.48504 * 109.47120 * 150.00092 * 19 17 15
23 23 C 1.46923 * 118.73407 * 306.64174 * 14 13 12
24 24 C 1.52761 * 109.00851 * 53.31126 * 23 14 13
25 25 C 1.53004 * 109.56260 * 185.54884 * 24 23 14
26 26 C 1.52997 * 109.36030 * 65.49766 * 24 23 14
27 27 C 1.34657 * 120.75120 * 359.48278 * 5 4 3
28 28 O 1.22058 * 119.98631 * 180.27770 * 27 5 4
29 29 C 1.36404 * 120.36400 * 180.02562 * 2 1 3
30 30 H 1.08998 * 109.46870 * 269.97463 * 1 2 3
31 31 H 1.09002 * 109.47109 * 29.97026 * 1 2 3
32 32 H 1.08994 * 109.47227 * 149.97240 * 1 2 3
33 33 H 1.07996 * 120.02698 * 0.05471 * 3 2 1
34 34 H 1.07999 * 119.64341 * 180.27662 * 4 3 2
35 35 H 1.09000 * 109.46650 * 149.72546 * 6 5 4
36 36 H 1.08998 * 109.47221 * 29.72943 * 6 5 4
37 37 H 0.96997 * 120.00456 * 359.97438 * 9 7 6
38 38 H 1.08999 * 109.50261 * 58.67320 * 12 10 9
39 39 H 1.09003 * 109.52548 * 298.59802 * 12 10 9
40 40 H 1.08995 * 109.58656 * 294.84908 * 13 12 10
41 41 H 1.08999 * 109.58870 * 174.42181 * 13 12 10
42 42 H 0.96999 * 120.00149 * 354.94573 * 18 17 15
43 43 H 1.08998 * 109.58630 * 173.14897 * 23 14 13
44 44 H 1.09005 * 109.58563 * 293.57056 * 23 14 13
45 45 H 1.09002 * 109.47175 * 179.97438 * 25 24 23
46 46 H 1.09001 * 109.47189 * 299.96842 * 25 24 23
47 47 H 1.09005 * 109.46889 * 59.96726 * 25 24 23
48 48 H 1.08997 * 109.47341 * 300.16041 * 26 24 23
49 49 H 1.09005 * 109.47224 * 60.15973 * 26 24 23
50 50 H 1.08999 * 109.47541 * 180.15549 * 26 24 23
51 51 H 1.07995 * 120.34627 * 359.97438 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2158 1.2096 0.0000
4 6 3.5693 1.1996 0.0047
5 7 4.2538 0.0272 -0.0011
6 6 5.7187 0.0441 -0.0011
7 6 6.2210 0.0499 -1.4220
8 8 5.4329 0.0414 -2.3437
9 7 7.5460 0.0647 -1.6683
10 6 8.0342 0.0709 -3.0496
11 1 7.3548 0.6530 -3.6722
12 6 8.1014 -1.3655 -3.5731
13 6 8.5795 -1.3526 -5.0284
14 7 9.8532 -0.6236 -5.1012
15 6 10.9542 -1.1988 -5.6773
16 1 11.9430 -0.9448 -5.3246
17 6 10.7997 -2.1081 -6.7147
18 7 11.7828 -2.9266 -7.0242
19 14 9.1964 -2.1701 -7.6712
20 1 8.2693 -3.1313 -7.0217
21 1 8.5777 -0.8203 -7.6884
22 1 9.4676 -2.6081 -9.0641
23 6 9.9244 0.7319 -4.5387
24 6 9.4297 0.6976 -3.0939
25 6 9.3675 2.1224 -2.5397
26 6 10.3920 -0.1385 -2.2479
27 6 3.6017 -1.1509 -0.0012
28 8 4.2311 -2.1967 -0.0013
29 6 2.1965 -1.1769 -0.0005
30 1 -0.3633 -0.0005 1.0277
31 1 -0.3633 0.8903 -0.5134
32 1 -0.3633 -0.8897 -0.5142
33 1 1.6823 2.1486 0.0009
34 1 4.1104 2.1342 0.0092
35 1 6.0922 -0.8417 0.5126
36 1 6.0718 0.9381 0.5128
37 1 8.1763 0.0719 -0.9311
38 1 7.1117 -1.8191 -3.5193
39 1 8.7992 -1.9423 -2.9660
40 1 7.8373 -0.8547 -5.6524
41 1 8.7239 -2.3759 -5.3747
42 1 12.6400 -2.8458 -6.5776
43 1 10.9559 1.0834 -4.5621
44 1 9.2941 1.4031 -5.1221
45 1 9.0139 2.0963 -1.5090
46 1 10.3616 2.5683 -2.5715
47 1 8.6828 2.7176 -3.1439
48 1 10.4369 -1.1528 -2.6443
49 1 11.3858 0.3083 -2.2798
50 1 10.0393 -0.1665 -1.2170
51 1 1.6682 -2.1188 -0.0005
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000941072290.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:31:40
Heat of formation + Delta-G solvation = -42.946500 kcal
Electronic energy + Delta-G solvation = -31789.516870 eV
Core-core repulsion = 27688.807790 eV
Total energy + Delta-G solvation = -4100.709080 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.45 seconds
Orbital eigenvalues (eV)
-42.53980 -41.33583 -39.65285 -38.10631 -36.59912 -36.17612 -34.65134 -33.77221
-32.20571 -31.20191 -30.38084 -28.27953 -28.10407 -27.76089 -26.16094 -24.65158
-23.82959 -22.86937 -22.61033 -21.58864 -20.01076 -19.50320 -18.54646 -18.47195
-18.43208 -17.28700 -17.00528 -16.54722 -16.37912 -16.14959 -16.00980 -15.60329
-15.47180 -15.27815 -15.15453 -15.10105 -14.70873 -14.34515 -14.16246 -14.02127
-13.90661 -13.60289 -13.38203 -13.28733 -13.01685 -12.91028 -12.87945 -12.74319
-12.70438 -12.50056 -12.46547 -12.05608 -11.86079 -11.69770 -11.55771 -11.39504
-11.29520 -11.19828 -11.09092 -10.68468 -10.54327 -10.09497 -9.11771 -8.98158
-8.46906 -5.57537 -0.11643 0.92433 1.38307 1.43611 1.48253 1.49991
1.66573 2.14491 2.47893 2.69867 3.05905 3.33486 3.54781 3.61322
3.67805 3.75236 3.80464 3.89618 3.96521 4.08967 4.17401 4.17744
4.28295 4.34431 4.40369 4.43326 4.46338 4.67787 4.72958 4.78699
4.81075 4.82793 4.85590 4.88453 4.90343 4.96084 5.05139 5.10838
5.12152 5.16326 5.22939 5.24793 5.37569 5.43975 5.49399 5.59982
5.66870 5.78953 6.05799 6.26237 6.44645 6.88176 6.97317 7.14081
7.54119 8.06578 8.86283
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.016029 B = 0.002743 C = 0.002531
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1746.452372 B =10203.959369 C =11061.577563
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C 0.033 3.967
3 C -0.232 4.232
4 C 0.142 3.858
5 N -0.483 5.483
6 C 0.073 3.927
7 C 0.497 3.503
8 O -0.576 6.576
9 N -0.701 5.701
10 C 0.178 3.822
11 H 0.069 0.931
12 C -0.136 4.136
13 C 0.125 3.875
14 N -0.613 5.613
15 C -0.317 4.317
16 H 0.039 0.961
17 C -0.068 4.068
18 N -0.959 5.959
19 Si 1.100 2.900
20 H -0.284 1.284
21 H -0.269 1.269
22 H -0.305 1.305
23 C 0.153 3.847
24 C -0.078 4.078
25 C -0.128 4.128
26 C -0.128 4.128
27 C 0.501 3.499
28 O -0.613 6.613
29 C -0.296 4.296
30 H 0.099 0.901
31 H 0.094 0.906
32 H 0.069 0.931
33 H 0.184 0.816
34 H 0.207 0.793
35 H 0.125 0.875
36 H 0.183 0.817
37 H 0.416 0.584
38 H 0.046 0.954
39 H 0.065 0.935
40 H 0.029 0.971
41 H 0.049 0.951
42 H 0.250 0.750
43 H 0.058 0.942
44 H 0.028 0.972
45 H 0.080 0.920
46 H 0.065 0.935
47 H 0.054 0.946
48 H 0.034 0.966
49 H 0.053 0.947
50 H 0.075 0.925
51 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.346 17.586 22.591 34.552
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.029 3.971
3 C -0.254 4.254
4 C 0.016 3.984
5 N -0.192 5.192
6 C -0.052 4.052
7 C 0.283 3.717
8 O -0.455 6.455
9 N -0.354 5.354
10 C 0.073 3.927
11 H 0.087 0.913
12 C -0.176 4.176
13 C 0.000 4.000
14 N -0.337 5.337
15 C -0.447 4.447
16 H 0.057 0.943
17 C -0.263 4.263
18 N -0.602 5.602
19 Si 0.927 3.073
20 H -0.211 1.211
21 H -0.194 1.194
22 H -0.233 1.233
23 C 0.027 3.973
24 C -0.080 4.080
25 C -0.186 4.186
26 C -0.186 4.186
27 C 0.307 3.693
28 O -0.501 6.501
29 C -0.317 4.317
30 H 0.117 0.883
31 H 0.113 0.887
32 H 0.088 0.912
33 H 0.201 0.799
34 H 0.223 0.777
35 H 0.143 0.857
36 H 0.200 0.800
37 H 0.254 0.746
38 H 0.065 0.935
39 H 0.083 0.917
40 H 0.046 0.954
41 H 0.068 0.932
42 H 0.059 0.941
43 H 0.077 0.923
44 H 0.046 0.954
45 H 0.099 0.901
46 H 0.084 0.916
47 H 0.073 0.927
48 H 0.054 0.946
49 H 0.072 0.928
50 H 0.094 0.906
51 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -20.249 16.155 20.760 33.197
hybrid contribution 1.747 -0.273 0.783 1.933
sum -18.503 15.882 21.543 32.538
Atomic orbital electron populations
1.21040 0.88092 1.04469 1.04364 1.20649 0.98487 0.92153 0.85776
1.21068 0.92565 0.99690 1.12086 1.22736 0.94377 0.89695 0.91576
1.45067 1.07980 1.07424 1.58695 1.22045 0.79057 1.09996 0.94117
1.21295 0.82777 0.75485 0.92100 1.90749 1.56366 1.50820 1.47544
1.45918 1.06442 1.74040 1.08952 1.20591 0.95024 0.94656 0.82460
0.91289 1.22296 0.99693 0.98220 0.97395 1.21291 0.87563 0.95870
0.95316 1.44373 1.07637 1.13051 1.68669 1.20066 0.86726 1.25074
1.12845 0.94291 1.27186 1.06906 0.95318 0.96894 1.71000 1.04613
1.35965 1.48653 0.83285 0.72518 0.76840 0.74615 1.21097 1.19370
1.23327 1.21100 0.99339 0.85130 0.91696 1.21125 0.92952 0.97190
0.96770 1.21748 1.02519 0.92739 1.01560 1.21751 0.98558 0.99415
0.98852 1.17508 0.90298 0.82775 0.78744 1.90914 1.70256 1.32383
1.56571 1.21886 0.91683 1.00775 1.17363 0.88285 0.88691 0.91186
0.79927 0.77658 0.85683 0.80014 0.74586 0.93517 0.91666 0.95354
0.93243 0.94062 0.92321 0.95390 0.90133 0.91614 0.92707 0.94646
0.92808 0.90636 0.84599
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.01 10.03 71.24 0.71 -0.30 16
2 C 0.03 0.51 5.89 -19.82 -0.12 0.39 16
3 C -0.23 -2.42 9.71 22.08 0.21 -2.20 16
4 C 0.14 1.61 10.28 83.42 0.86 2.47 16
5 N -0.48 -9.53 2.07 -655.07 -1.36 -10.89 16
6 C 0.07 1.12 5.82 85.63 0.50 1.62 16
7 C 0.50 12.04 7.86 87.66 0.69 12.73 16
8 O -0.58 -20.02 16.09 -3.03 -0.05 -20.07 16
9 N -0.70 -15.22 4.29 -442.41 -1.90 -17.12 16
10 C 0.18 5.33 1.57 45.01 0.07 5.40 16
11 H 0.07 2.33 7.58 -2.39 -0.02 2.32 16
12 C -0.14 -5.19 5.31 30.67 0.16 -5.03 16
13 C 0.13 5.71 4.21 86.36 0.36 6.07 16
14 N -0.61 -29.01 2.17 -699.92 -1.52 -30.52 16
15 C -0.32 -18.00 9.88 84.03 0.83 -17.17 16
16 H 0.04 2.39 8.06 -2.91 -0.02 2.36 16
17 C -0.07 -4.08 5.24 84.86 0.44 -3.63 16
18 N -0.96 -62.09 13.70 21.65 0.30 -61.79 16
19 Si 1.10 56.33 24.73 68.60 1.70 58.02 16
20 H -0.28 -13.94 6.56 99.48 0.65 -13.29 16
21 H -0.27 -12.87 6.80 99.48 0.68 -12.20 16
22 H -0.30 -15.76 7.11 99.48 0.71 -15.06 16
23 C 0.15 5.73 5.15 86.22 0.44 6.17 16
24 C -0.08 -2.16 0.56 -52.25 -0.03 -2.19 16
25 C -0.13 -2.42 8.31 71.98 0.60 -1.82 16
26 C -0.13 -3.53 7.82 71.98 0.56 -2.97 16
27 C 0.50 14.53 7.40 84.82 0.63 15.16 16
28 O -0.61 -23.59 16.64 -5.51 -0.09 -23.68 16
29 C -0.30 -7.02 9.65 22.40 0.22 -6.80 16
30 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16
31 H 0.09 0.43 8.10 -2.39 -0.02 0.41 16
32 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16
33 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16
34 H 0.21 0.34 8.03 -2.91 -0.02 0.31 16
35 H 0.13 2.13 7.39 -2.39 -0.02 2.11 16
36 H 0.18 0.45 8.01 -2.39 -0.02 0.43 16
37 H 0.42 6.05 6.66 -92.71 -0.62 5.43 16
38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16
39 H 0.06 2.53 6.34 -2.39 -0.02 2.51 16
40 H 0.03 1.29 7.10 -2.39 -0.02 1.27 16
41 H 0.05 2.50 4.76 -2.39 -0.01 2.49 16
42 H 0.25 16.16 8.73 -92.71 -0.81 15.35 16
43 H 0.06 2.24 7.93 -2.39 -0.02 2.22 16
44 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16
45 H 0.08 1.05 7.36 -2.39 -0.02 1.03 16
46 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
47 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16
48 H 0.03 1.27 5.97 -2.39 -0.01 1.25 16
49 H 0.05 1.46 8.14 -2.38 -0.02 1.45 16
50 H 0.07 1.46 6.58 -2.39 -0.02 1.44 16
51 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16
Total: -1.00 -90.84 396.49 4.43 -86.41
By element:
Atomic # 1 Polarization: 11.55 SS G_CDS: 0.20 Total: 11.74 kcal
Atomic # 6 Polarization: 0.75 SS G_CDS: 7.15 Total: 7.90 kcal
Atomic # 7 Polarization: -115.85 SS G_CDS: -4.47 Total: -120.32 kcal
Atomic # 8 Polarization: -43.61 SS G_CDS: -0.14 Total: -43.75 kcal
Atomic # 14 Polarization: 56.33 SS G_CDS: 1.70 Total: 58.02 kcal
Total: -90.84 4.43 -86.41 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000941072290.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.467 kcal
(2) G-P(sol) polarization free energy of solvation -90.839 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.372 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.414 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.946 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.45 seconds