Wall clock time and date at job start Wed Apr 1 2020 04:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37997 * 120.81943 * 2 1 4 4 C 1.39125 * 119.25923 * 180.30010 * 3 2 1 5 5 O 1.35503 * 119.51892 * 179.72603 * 4 3 2 6 6 N 1.32427 * 120.95493 * 359.40274 * 4 3 2 7 7 C 1.31638 * 121.79671 * 0.63804 * 6 4 3 8 8 C 1.50706 * 119.68696 * 179.67810 * 7 6 4 9 9 C 1.39562 * 120.62504 * 359.65514 * 7 6 4 10 10 C 1.47624 * 120.49778 * 180.02562 * 9 7 6 11 11 O 1.21581 * 120.00150 * 269.97934 * 10 9 7 12 12 N 1.34780 * 119.99819 * 89.97683 * 10 9 7 13 13 C 1.46495 * 119.99611 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.46509 * 325.00254 * 13 12 10 15 15 C 1.53046 * 109.46186 * 84.97555 * 13 12 10 16 16 C 1.53185 * 109.31490 * 181.38203 * 15 13 12 17 17 N 1.46923 * 108.77832 * 305.36352 * 16 15 13 18 18 C 1.36937 * 120.63450 * 233.63039 * 17 16 15 19 19 H 1.07998 * 120.00075 * 151.84485 * 18 17 16 20 20 C 1.38810 * 119.99955 * 331.84628 * 18 17 16 21 21 N 1.31617 * 119.99839 * 343.06108 * 20 18 17 22 22 Si 1.86796 * 120.00055 * 163.06316 * 20 18 17 23 23 H 1.48502 * 109.47056 * 60.00142 * 22 20 18 24 24 H 1.48510 * 109.47029 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47026 * 299.99662 * 22 20 18 26 26 C 1.46930 * 118.73616 * 53.60819 * 17 16 15 27 27 C 1.53047 * 109.45910 * 205.02718 * 13 12 10 28 28 C 1.52999 * 109.49554 * 298.56682 * 27 13 12 29 29 C 1.52995 * 109.49666 * 58.66529 * 27 13 12 30 30 H 1.08998 * 109.47500 * 89.99936 * 1 2 3 31 31 H 1.09006 * 109.46960 * 209.99801 * 1 2 3 32 32 H 1.08993 * 109.47009 * 329.99773 * 1 2 3 33 33 H 1.07998 * 120.36692 * 0.02562 * 3 2 1 34 34 H 0.96698 * 114.00323 * 90.00032 * 5 4 3 35 35 H 1.09002 * 109.46829 * 269.97395 * 8 7 6 36 36 H 1.08997 * 109.47270 * 29.97401 * 8 7 6 37 37 H 1.08996 * 109.47243 * 149.98015 * 8 7 6 38 38 H 0.96994 * 119.99688 * 359.97438 * 12 10 9 39 39 H 1.08997 * 109.49724 * 301.33754 * 15 13 12 40 40 H 1.09004 * 109.49351 * 61.39603 * 15 13 12 41 41 H 1.08996 * 109.58733 * 65.15560 * 16 15 13 42 42 H 1.09001 * 109.58551 * 185.43142 * 16 15 13 43 43 H 0.97003 * 120.00529 * 179.97438 * 21 20 18 44 44 H 1.08994 * 109.58669 * 66.17962 * 26 17 16 45 45 H 1.09000 * 109.58365 * 186.46184 * 26 17 16 46 46 H 1.09000 * 109.47086 * 60.00156 * 28 27 13 47 47 H 1.09004 * 109.46829 * 179.97438 * 28 27 13 48 48 H 1.08997 * 109.47550 * 300.00091 * 28 27 13 49 49 H 1.09004 * 109.47373 * 59.99779 * 29 27 13 50 50 H 1.08994 * 109.47173 * 180.02562 * 29 27 13 51 51 H 1.09004 * 109.47284 * 300.00600 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1472 -0.0064 5 8 4.3042 2.3078 -0.0120 6 7 4.2548 -0.0065 -0.0005 7 6 3.6205 -1.1600 -0.0010 8 6 4.4081 -2.4449 -0.0016 9 6 2.2256 -1.2043 -0.0006 10 6 1.5171 -2.4995 -0.0006 11 8 1.2247 -3.0324 -1.0535 12 7 1.1946 -3.0911 1.1667 13 6 0.4910 -4.3761 1.1666 14 1 -0.2011 -4.4112 0.3254 15 6 1.5069 -5.5136 1.0388 16 6 0.7654 -6.8536 1.0043 17 7 -0.0986 -6.9466 2.1890 18 6 -0.0182 -8.0257 3.0283 19 1 -0.2727 -7.9179 4.0723 20 6 0.3905 -9.2580 2.5372 21 7 0.3802 -9.4861 1.2410 22 14 0.9552 -10.5925 3.7159 23 1 -0.1493 -10.9272 4.6504 24 1 1.3359 -11.8042 2.9461 25 1 2.1272 -10.1075 4.4880 26 6 -1.0502 -5.8596 2.4564 27 6 -0.2881 -4.5308 2.4748 28 6 0.6863 -4.5169 3.6542 29 6 -1.2805 -3.3752 2.6178 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.6935 2.1314 0.0004 34 1 4.5114 2.6465 0.8697 35 1 4.5975 -2.7544 -1.0294 36 1 5.3569 -2.2897 0.5119 37 1 3.8394 -3.2199 0.5122 38 1 1.4282 -2.6661 2.0066 39 1 2.0777 -5.3899 0.1185 40 1 2.1844 -5.4939 1.8925 41 1 0.1563 -6.9110 0.1023 42 1 1.4869 -7.6707 1.0105 43 1 0.6662 -10.3471 0.8976 44 1 -1.8075 -5.8359 1.6728 45 1 -1.5287 -6.0222 3.4222 46 1 1.2302 -3.5724 3.6651 47 1 0.1309 -4.6267 4.5857 48 1 1.3920 -5.3413 3.5523 49 1 -1.9752 -3.3867 1.7778 50 1 -1.8349 -3.4855 3.5497 51 1 -0.7383 -2.4296 2.6277 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941230160.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:45 Heat of formation + Delta-G solvation = -29.067592 kcal Electronic energy + Delta-G solvation = -32232.432753 eV Core-core repulsion = 28132.325508 eV Total energy + Delta-G solvation = -4100.107245 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.20090 -39.84718 -38.29057 -37.27903 -34.66131 -34.58430 -33.17904 -32.04486 -31.34629 -29.88960 -28.37209 -27.96291 -26.95841 -25.90671 -25.21497 -23.77817 -22.22502 -21.60115 -20.78160 -20.43042 -18.85047 -18.50444 -17.50669 -17.35013 -16.69522 -16.17178 -15.79257 -14.96890 -14.61874 -14.45332 -14.42356 -14.15369 -13.94307 -13.73615 -13.67987 -13.58119 -13.35733 -13.14789 -12.99349 -12.78369 -12.53254 -12.38259 -12.30154 -12.15850 -11.91551 -11.79582 -11.53409 -11.37069 -11.04534 -10.91965 -10.73173 -10.62335 -10.45078 -10.22615 -10.14467 -9.99005 -9.85209 -9.76303 -9.65783 -9.42826 -9.07529 -8.75007 -8.43061 -6.68976 -5.80074 -3.23107 0.49168 0.83173 2.58485 2.95948 3.32816 3.34992 3.37468 3.43629 3.43844 4.15702 4.22954 4.47441 4.59072 4.72229 4.88675 5.00119 5.05924 5.19277 5.21346 5.24461 5.26952 5.30073 5.40622 5.45336 5.54848 5.59002 5.69047 5.78491 5.81673 5.87045 5.87755 5.89592 6.05896 6.10594 6.14534 6.22059 6.28229 6.36946 6.47261 6.51565 6.63647 6.76201 6.78187 6.88870 6.95699 7.10112 7.34827 7.55509 7.60615 7.66856 7.78032 8.26059 8.43141 9.19309 9.82556 10.39156 11.28311 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018889 B = 0.002786 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.000356 B =10047.347425 C =10620.710533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.011 3.989 3 C -0.198 4.198 4 C 0.329 3.671 5 O -0.481 6.481 6 N -0.507 5.507 7 C 0.196 3.804 8 C -0.114 4.114 9 C -0.189 4.189 10 C 0.568 3.432 11 O -0.525 6.525 12 N -0.712 5.712 13 C 0.162 3.838 14 H 0.083 0.917 15 C -0.151 4.151 16 C 0.174 3.826 17 N -0.588 5.588 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.160 3.840 27 C -0.089 4.089 28 C -0.131 4.131 29 C -0.137 4.137 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.145 0.855 34 H 0.402 0.598 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.396 0.604 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.020 0.980 42 H 0.089 0.911 43 H 0.255 0.745 44 H 0.019 0.981 45 H 0.058 0.942 46 H 0.033 0.967 47 H 0.050 0.950 48 H 0.076 0.924 49 H 0.052 0.948 50 H 0.054 0.946 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.912 21.972 1.872 22.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.003 3.997 3 C -0.219 4.219 4 C 0.150 3.850 5 O -0.288 6.288 6 N -0.227 5.227 7 C 0.057 3.943 8 C -0.171 4.171 9 C -0.194 4.194 10 C 0.351 3.649 11 O -0.401 6.401 12 N -0.363 5.363 13 C 0.059 3.941 14 H 0.101 0.899 15 C -0.191 4.191 16 C 0.048 3.952 17 N -0.310 5.310 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.033 3.967 27 C -0.091 4.091 28 C -0.188 4.188 29 C -0.195 4.195 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.163 0.837 34 H 0.260 0.740 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.231 0.769 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.038 0.962 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.037 0.963 45 H 0.076 0.924 46 H 0.052 0.948 47 H 0.069 0.931 48 H 0.095 0.905 49 H 0.071 0.929 50 H 0.073 0.927 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.587 21.406 0.430 21.708 hybrid contribution -0.301 -0.213 1.335 1.385 sum 3.286 21.193 1.764 21.519 Atomic orbital electron populations 1.20949 0.89262 1.03921 1.03922 1.20214 0.96983 0.90858 0.91636 1.21858 0.93715 0.99308 1.06998 1.19246 0.87046 0.85046 0.93664 1.84739 1.75981 1.34053 1.34075 1.66997 1.41867 0.97834 1.16012 1.21082 0.89229 0.93139 0.90823 1.20897 1.00423 0.91498 1.04278 1.20834 0.94894 0.94694 1.08989 1.17834 0.78782 0.83627 0.84614 1.90845 1.53447 1.64619 1.31179 1.46423 1.58836 1.23413 1.07618 1.21082 0.93858 0.80961 0.98178 0.89937 1.22648 0.98389 0.97382 1.00649 1.20738 0.93388 0.92663 0.88403 1.44028 1.39138 1.19688 1.28105 1.19091 1.42203 0.86878 0.90132 0.91747 1.25043 1.01879 0.96898 0.95660 1.70018 1.50040 1.23154 1.11244 0.86399 0.78913 0.81313 0.80287 1.20946 1.21681 1.21056 1.20901 0.90931 0.86033 0.98884 1.21361 0.95956 0.97734 0.94061 1.21791 0.99398 1.00663 0.96989 1.21816 0.98836 0.97292 1.01548 0.89528 0.90387 0.90282 0.83702 0.74006 0.89310 0.89655 0.89892 0.76918 0.92834 0.92086 0.96229 0.89242 0.93523 0.96297 0.92375 0.94817 0.93100 0.90509 0.92900 0.92657 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.69 36.01 0.35 -0.71 16 2 C 0.01 0.12 5.95 -103.96 -0.62 -0.50 16 3 C -0.20 -1.83 9.72 -39.34 -0.38 -2.21 16 4 C 0.33 3.53 7.74 -16.97 -0.13 3.39 16 5 O -0.48 -4.19 13.55 -18.20 -0.25 -4.43 16 6 N -0.51 -6.40 10.28 -9.20 -0.09 -6.49 16 7 C 0.20 2.46 6.82 -82.18 -0.56 1.90 16 8 C -0.11 -1.30 9.78 36.01 0.35 -0.94 16 9 C -0.19 -2.36 5.65 -104.82 -0.59 -2.96 16 10 C 0.57 8.17 4.29 -12.43 -0.05 8.12 16 11 O -0.52 -9.71 16.77 5.29 0.09 -9.62 16 12 N -0.71 -9.34 4.29 -54.78 -0.23 -9.58 16 13 C 0.16 2.60 1.57 -67.88 -0.11 2.50 16 14 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 15 C -0.15 -2.79 5.31 -26.61 -0.14 -2.93 16 16 C 0.17 4.03 5.30 -3.72 -0.02 4.01 16 17 N -0.59 -13.77 2.43 -172.33 -0.42 -14.19 16 18 C -0.25 -6.60 9.58 -15.06 -0.14 -6.75 16 19 H 0.06 1.65 7.88 -52.49 -0.41 1.23 16 20 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 21 N -0.90 -25.62 11.19 55.49 0.62 -25.00 16 22 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.16 3.10 5.20 -3.71 -0.02 3.08 16 27 C -0.09 -1.35 0.56 -154.39 -0.09 -1.43 16 28 C -0.13 -1.90 7.83 37.16 0.29 -1.61 16 29 C -0.14 -1.68 8.31 37.16 0.31 -1.38 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.74 7.19 -51.93 -0.37 0.36 16 32 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 33 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.40 1.36 9.06 45.56 0.41 1.77 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.98 7.07 -51.93 -0.37 0.61 16 38 H 0.40 4.41 6.65 -40.82 -0.27 4.14 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 1.11 6.34 -51.93 -0.33 0.78 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 46 H 0.03 0.40 6.58 -51.93 -0.34 0.05 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.08 1.33 5.97 -51.93 -0.31 1.02 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.05 0.49 7.36 -51.93 -0.38 0.11 16 LS Contribution 401.03 15.07 6.04 6.04 Total: -1.00 -32.33 401.03 -8.19 -40.52 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.28 Total: 5.02 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -1.64 Total: 1.60 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.13 Total: -55.27 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.16 Total: -14.06 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.33 -8.19 -40.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941230160.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.451 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds