Wall clock time and date at job start Wed Apr 1 2020 08:26:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.35447 * 126.77292 * 2 1
4 4 C 1.41381 * 103.98437 * 179.90961 * 3 2 1
5 5 C 1.50707 * 126.80099 * 180.16646 * 4 3 2
6 6 C 1.50694 * 109.47128 * 125.25783 * 5 4 3
7 7 O 1.21289 * 119.99958 * 359.97438 * 6 5 4
8 8 N 1.34773 * 120.00280 * 179.97438 * 6 5 4
9 9 C 1.46926 * 120.62642 * 359.71521 * 8 6 5
10 10 C 1.53627 * 108.54285 * 126.37094 * 9 8 6
11 11 C 1.53043 * 109.24152 * 54.85651 * 10 9 8
12 12 C 1.53044 * 109.53713 * 298.51273 * 11 10 9
13 13 H 1.09002 * 109.49338 * 301.41309 * 12 11 10
14 14 C 1.52999 * 109.52526 * 181.33748 * 12 11 10
15 15 H 1.09004 * 110.63555 * 300.84136 * 14 12 11
16 16 C 1.55158 * 110.72019 * 177.70632 * 14 12 11
17 17 C 1.54911 * 101.57777 * 206.12904 * 16 14 12
18 18 N 1.47428 * 104.83336 * 37.00885 * 17 16 14
19 19 C 1.36939 * 125.64947 * 155.90673 * 18 17 16
20 20 H 1.07998 * 119.99940 * 179.97438 * 19 18 17
21 21 C 1.38813 * 119.99719 * 359.97438 * 19 18 17
22 22 N 1.31614 * 120.00544 * 359.97438 * 21 19 18
23 23 Si 1.86802 * 119.99715 * 180.02562 * 21 19 18
24 24 H 1.48496 * 109.47035 * 359.97438 * 23 21 19
25 25 H 1.48501 * 109.47129 * 119.99785 * 23 21 19
26 26 H 1.48501 * 109.47190 * 239.99736 * 23 21 19
27 27 C 1.47317 * 108.73454 * 335.71373 * 18 17 16
28 28 C 1.46923 * 120.63239 * 179.97438 * 8 6 5
29 29 N 1.30174 * 106.39440 * 0.35966 * 4 3 2
30 30 O 1.20914 * 111.60281 * 359.76740 * 29 4 3
31 31 H 1.09001 * 109.46953 * 179.70824 * 1 2 3
32 32 H 1.09000 * 109.47318 * 299.70422 * 1 2 3
33 33 H 1.09000 * 109.47161 * 59.71052 * 1 2 3
34 34 H 1.08002 * 128.00955 * 0.02562 * 3 2 1
35 35 H 1.09005 * 109.46623 * 245.25806 * 5 4 3
36 36 H 1.08993 * 109.46986 * 5.25261 * 5 4 3
37 37 H 1.09000 * 109.59027 * 246.20035 * 9 8 6
38 38 H 1.09002 * 109.58907 * 6.63035 * 9 8 6
39 39 H 1.08999 * 109.63103 * 294.86521 * 10 9 8
40 40 H 1.08999 * 109.46233 * 174.74013 * 10 9 8
41 41 H 1.09000 * 109.46003 * 178.49173 * 11 10 9
42 42 H 1.08993 * 109.46119 * 58.53140 * 11 10 9
43 43 H 1.09002 * 111.00392 * 324.20203 * 16 14 12
44 44 H 1.08993 * 111.00366 * 88.01856 * 16 14 12
45 45 H 1.09002 * 110.36753 * 155.84304 * 17 16 14
46 46 H 1.08992 * 110.36808 * 278.16821 * 17 16 14
47 47 H 0.97004 * 120.00782 * 179.97438 * 22 21 19
48 48 H 1.09003 * 110.06392 * 241.87007 * 27 18 17
49 49 H 1.09006 * 109.84997 * 120.61253 * 27 18 17
50 50 H 1.08997 * 109.58655 * 353.37284 * 28 8 6
51 51 H 1.09002 * 109.58383 * 113.79787 * 28 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3179 1.0849 0.0000
4 6 3.6213 0.5373 0.0022
5 6 4.9211 1.3002 0.0066
6 6 5.7667 0.8452 1.1680
7 8 5.3543 -0.0137 1.9185
8 7 6.9811 1.3925 1.3727
9 6 7.4968 2.4294 0.4685
10 6 7.9065 3.6495 1.3074
11 6 8.8969 3.2090 2.3878
12 6 8.2255 2.1918 3.3135
13 1 7.3402 2.6397 3.7649
14 6 9.2050 1.7767 4.4132
15 1 10.1045 1.3382 3.9810
16 6 8.5330 0.7880 5.4023
17 6 9.3504 1.0372 6.6944
18 7 9.6205 2.4865 6.6965
19 6 9.8867 3.2471 7.8037
20 1 10.0725 4.3058 7.6996
21 6 9.9177 2.6571 9.0599
22 7 9.6907 1.3669 9.1869
23 14 10.2801 3.6948 10.5703
24 1 10.4975 5.1056 10.1611
25 1 9.1309 3.6224 11.5080
26 1 11.5006 3.1812 11.2425
27 6 9.5613 2.9809 5.3101
28 6 7.8168 0.9597 2.5009
29 7 3.4764 -0.7563 -0.0046
30 8 2.3096 -1.0735 -0.0059
31 1 -0.3633 -1.0277 -0.0052
32 1 -0.3634 0.5092 0.8926
33 1 -0.3633 0.5183 -0.8874
34 1 2.0344 2.1271 0.0004
35 1 5.4543 1.1147 -0.9259
36 1 4.7162 2.3664 0.1020
37 1 8.3629 2.0461 -0.0711
38 1 6.7196 2.7159 -0.2402
39 1 7.0242 4.0835 1.7777
40 1 8.3776 4.3917 0.6629
41 1 9.2106 4.0766 2.9683
42 1 9.7679 2.7526 1.9177
43 1 7.4822 1.0373 5.5505
44 1 8.6439 -0.2413 5.0615
45 1 8.7669 0.7588 7.5720
46 1 10.2850 0.4771 6.6659
47 1 9.7127 0.9546 10.0647
48 1 10.5289 3.3882 5.0167
49 1 8.7920 3.7483 5.2233
50 1 7.2509 0.2760 3.1336
51 1 8.7085 0.4586 2.1240
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000961120152.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 08:26:32
Heat of formation + Delta-G solvation = 43.151323 kcal
Electronic energy + Delta-G solvation = -30790.335718 eV
Core-core repulsion = 26693.360119 eV
Total energy + Delta-G solvation = -4096.975598 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.28 seconds
Orbital eigenvalues (eV)
-45.10809 -40.39033 -38.35079 -36.66874 -34.89567 -33.73931 -33.57718 -32.30784
-31.23500 -29.77374 -28.84213 -28.07190 -27.08654 -25.46150 -24.40389 -23.31251
-22.81447 -21.57389 -20.36657 -19.93663 -19.36350 -18.77895 -17.93336 -17.52009
-17.04805 -16.76578 -16.03647 -15.71533 -15.05637 -14.75669 -14.55404 -14.43271
-14.11227 -13.91696 -13.82574 -13.63675 -13.48287 -13.30853 -13.20396 -13.10414
-12.67710 -12.48133 -12.39455 -12.11185 -11.76626 -11.53705 -11.33213 -11.28833
-11.04415 -10.99331 -10.88677 -10.81937 -10.56096 -10.41120 -10.04945 -9.99955
-9.88879 -9.72790 -9.65718 -9.51435 -9.36254 -8.68552 -8.59669 -6.76797
-5.59769 -3.01376 1.29033 1.96529 2.51283 2.84739 2.93192 3.42142
3.47012 3.49972 3.83886 4.10187 4.38267 4.52427 4.58287 4.71669
4.75826 4.80358 4.83082 4.86347 4.98310 5.00283 5.05177 5.16031
5.18638 5.24054 5.36718 5.45055 5.50647 5.54528 5.57830 5.63099
5.64551 5.75497 5.78506 5.83718 5.95042 6.02074 6.05658 6.10688
6.31231 6.34720 6.47096 6.50878 6.67257 6.72563 6.84257 7.04691
7.26960 7.59991 7.68675 7.93038 8.06963 8.12984 8.43047 9.27720
9.88925 10.54890 11.43934
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.015056 B = 0.002154 C = 0.002002
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1859.233755 B =12997.767924 C =13981.828325
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C -0.037 4.037
3 C -0.230 4.230
4 C 0.026 3.974
5 C -0.060 4.060
6 C 0.514 3.486
7 O -0.523 6.523
8 N -0.611 5.611
9 C 0.105 3.895
10 C -0.135 4.135
11 C -0.117 4.117
12 C -0.086 4.086
13 H 0.074 0.926
14 C -0.092 4.092
15 H 0.070 0.930
16 C -0.140 4.140
17 C 0.152 3.848
18 N -0.606 5.606
19 C -0.220 4.220
20 H 0.077 0.923
21 C -0.014 4.014
22 N -0.922 5.922
23 Si 0.913 3.087
24 H -0.281 1.281
25 H -0.291 1.291
26 H -0.291 1.291
27 C 0.145 3.855
28 C 0.118 3.882
29 N -0.336 5.336
30 O 0.105 5.895
31 H 0.082 0.918
32 H 0.090 0.910
33 H 0.089 0.911
34 H 0.171 0.829
35 H 0.111 0.889
36 H 0.115 0.885
37 H 0.071 0.929
38 H 0.081 0.919
39 H 0.067 0.933
40 H 0.074 0.926
41 H 0.072 0.928
42 H 0.063 0.937
43 H 0.059 0.941
44 H 0.056 0.944
45 H 0.105 0.895
46 H 0.010 0.990
47 H 0.251 0.749
48 H 0.018 0.982
49 H 0.022 0.978
50 H 0.095 0.905
51 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.965 2.224 -25.772 29.396
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.100 4.100
3 C -0.251 4.251
4 C -0.133 4.133
5 C -0.101 4.101
6 C 0.301 3.699
7 O -0.398 6.398
8 N -0.345 5.345
9 C -0.018 4.018
10 C -0.173 4.173
11 C -0.154 4.154
12 C -0.106 4.106
13 H 0.092 0.908
14 C -0.112 4.112
15 H 0.088 0.912
16 C -0.179 4.179
17 C 0.027 3.973
18 N -0.332 5.332
19 C -0.349 4.349
20 H 0.094 0.906
21 C -0.209 4.209
22 N -0.571 5.571
23 Si 0.744 3.256
24 H -0.206 1.206
25 H -0.218 1.218
26 H -0.218 1.218
27 C 0.019 3.981
28 C -0.003 4.003
29 N -0.037 5.037
30 O 0.035 5.965
31 H 0.101 0.899
32 H 0.108 0.892
33 H 0.108 0.892
34 H 0.188 0.812
35 H 0.129 0.871
36 H 0.133 0.867
37 H 0.089 0.911
38 H 0.099 0.901
39 H 0.086 0.914
40 H 0.093 0.907
41 H 0.090 0.910
42 H 0.082 0.918
43 H 0.078 0.922
44 H 0.075 0.925
45 H 0.122 0.878
46 H 0.028 0.972
47 H 0.062 0.938
48 H 0.036 0.964
49 H 0.040 0.960
50 H 0.114 0.886
51 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -13.293 0.710 -25.145 28.451
hybrid contribution 0.095 1.475 0.775 1.669
sum -13.198 2.185 -24.370 27.800
Atomic orbital electron populations
1.20332 0.84075 1.04707 1.04016 1.24488 0.96429 0.86267 1.02861
1.22322 0.91077 1.00998 1.10750 1.22780 0.95970 0.90199 1.04366
1.20022 0.90492 1.00318 0.99236 1.20257 0.81372 0.82118 0.86166
1.90771 1.71083 1.31023 1.46958 1.48112 1.17063 1.39846 1.29506
1.21892 0.99626 0.88241 0.92034 1.22006 1.00328 0.96791 0.98155
1.21611 0.97734 0.99595 0.96489 1.21493 0.98944 0.95001 0.95122
0.90785 1.22129 0.97189 0.97663 0.94197 0.91188 1.23062 0.99808
0.97062 0.97955 1.21905 0.96180 0.84008 0.95170 1.44610 1.83068
1.05056 1.00461 1.19122 1.40029 0.91420 0.84298 0.90554 1.24798
1.02485 0.96071 0.97558 1.69825 1.56347 1.09009 1.21877 0.86011
0.77484 0.79039 0.83055 1.20581 1.21775 1.21810 1.21322 0.97058
0.93911 0.85813 1.21719 0.94225 0.97170 0.87222 1.73887 0.96411
1.16133 1.17270 1.84866 1.11362 1.33221 1.67071 0.89879 0.89177
0.89238 0.81187 0.87125 0.86697 0.91070 0.90062 0.91415 0.90733
0.90956 0.91823 0.92249 0.92527 0.87771 0.97213 0.93838 0.96405
0.96049 0.88648 0.91592
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.31 10.45 36.01 0.38 0.06 16
2 C -0.04 -0.32 7.49 -35.30 -0.26 -0.59 16
3 C -0.23 -2.05 11.05 -39.38 -0.44 -2.48 16
4 C 0.03 0.31 6.10 -82.10 -0.50 -0.20 16
5 C -0.06 -0.55 4.64 -29.03 -0.13 -0.69 16
6 C 0.51 6.84 7.69 -10.99 -0.08 6.75 16
7 O -0.52 -9.53 15.01 5.55 0.08 -9.45 16
8 N -0.61 -7.09 2.97 -172.53 -0.51 -7.60 16
9 C 0.11 0.81 6.37 -3.48 -0.02 0.79 16
10 C -0.13 -1.12 6.10 -26.38 -0.16 -1.28 16
11 C -0.12 -1.30 5.01 -26.69 -0.13 -1.43 16
12 C -0.09 -1.21 1.71 -90.52 -0.16 -1.36 16
13 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16
14 C -0.09 -1.60 2.49 -88.79 -0.22 -1.82 16
15 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16
16 C -0.14 -2.80 5.61 -24.58 -0.14 -2.94 16
17 C 0.15 3.86 5.89 -2.53 -0.01 3.84 16
18 N -0.61 -16.03 3.40 -169.83 -0.58 -16.60 16
19 C -0.22 -6.31 10.28 -15.06 -0.15 -6.46 16
20 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16
21 C -0.01 -0.40 5.49 -17.43 -0.10 -0.50 16
22 N -0.92 -27.72 10.09 55.49 0.56 -27.16 16
23 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16
24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
26 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16
27 C 0.14 3.05 5.91 -2.90 -0.02 3.04 16
28 C 0.12 1.61 5.41 -3.73 -0.02 1.59 16
29 N -0.34 -4.75 11.46 33.42 0.38 -4.37 16
30 O 0.10 1.27 11.20 17.19 0.19 1.47 16
31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16
32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16
33 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16
34 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16
35 H 0.11 0.76 7.93 -51.93 -0.41 0.35 16
36 H 0.11 0.69 7.70 -51.93 -0.40 0.29 16
37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
38 H 0.08 0.41 5.93 -51.93 -0.31 0.10 16
39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16
41 H 0.07 0.87 7.29 -51.93 -0.38 0.49 16
42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
43 H 0.06 1.22 8.05 -51.93 -0.42 0.80 16
44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
45 H 0.10 2.98 5.87 -51.93 -0.31 2.68 16
46 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16
47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16
48 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16
49 H 0.02 0.45 7.68 -51.93 -0.40 0.05 16
50 H 0.10 1.56 6.43 -51.93 -0.33 1.22 16
51 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
LS Contribution 399.58 15.07 6.02 6.02
Total: -1.00 -36.71 399.58 -9.47 -46.18
By element:
Atomic # 1 Polarization: 6.08 SS G_CDS: -8.42 Total: -2.34 kcal
Atomic # 6 Polarization: -1.51 SS G_CDS: -2.18 Total: -3.69 kcal
Atomic # 7 Polarization: -55.59 SS G_CDS: -0.15 Total: -55.73 kcal
Atomic # 8 Polarization: -8.26 SS G_CDS: 0.28 Total: -7.99 kcal
Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -36.71 -9.47 -46.18 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000961120152.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.329 kcal
(2) G-P(sol) polarization free energy of solvation -36.710 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.618 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.177 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.151 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.28 seconds