Wall clock time and date at job start Wed Apr 1 2020 08:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35447 * 126.77292 * 2 1 4 4 C 1.41381 * 103.98437 * 179.90961 * 3 2 1 5 5 C 1.50707 * 126.80099 * 180.16646 * 4 3 2 6 6 C 1.50694 * 109.47128 * 125.25783 * 5 4 3 7 7 O 1.21289 * 119.99958 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00280 * 179.97438 * 6 5 4 9 9 C 1.46926 * 120.62642 * 359.71521 * 8 6 5 10 10 C 1.53627 * 108.54285 * 126.37094 * 9 8 6 11 11 C 1.53043 * 109.24152 * 54.85651 * 10 9 8 12 12 C 1.53044 * 109.53713 * 298.51273 * 11 10 9 13 13 H 1.09002 * 109.49338 * 301.41309 * 12 11 10 14 14 C 1.52999 * 109.52526 * 181.33748 * 12 11 10 15 15 H 1.09004 * 110.63555 * 300.84136 * 14 12 11 16 16 C 1.55158 * 110.72019 * 177.70632 * 14 12 11 17 17 C 1.54911 * 101.57777 * 206.12904 * 16 14 12 18 18 N 1.47428 * 104.83336 * 37.00885 * 17 16 14 19 19 C 1.36939 * 125.64947 * 155.90673 * 18 17 16 20 20 H 1.07998 * 119.99940 * 179.97438 * 19 18 17 21 21 C 1.38813 * 119.99719 * 359.97438 * 19 18 17 22 22 N 1.31614 * 120.00544 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99715 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47035 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47129 * 119.99785 * 23 21 19 26 26 H 1.48501 * 109.47190 * 239.99736 * 23 21 19 27 27 C 1.47317 * 108.73454 * 335.71373 * 18 17 16 28 28 C 1.46923 * 120.63239 * 179.97438 * 8 6 5 29 29 N 1.30174 * 106.39440 * 0.35966 * 4 3 2 30 30 O 1.20914 * 111.60281 * 359.76740 * 29 4 3 31 31 H 1.09001 * 109.46953 * 179.70824 * 1 2 3 32 32 H 1.09000 * 109.47318 * 299.70422 * 1 2 3 33 33 H 1.09000 * 109.47161 * 59.71052 * 1 2 3 34 34 H 1.08002 * 128.00955 * 0.02562 * 3 2 1 35 35 H 1.09005 * 109.46623 * 245.25806 * 5 4 3 36 36 H 1.08993 * 109.46986 * 5.25261 * 5 4 3 37 37 H 1.09000 * 109.59027 * 246.20035 * 9 8 6 38 38 H 1.09002 * 109.58907 * 6.63035 * 9 8 6 39 39 H 1.08999 * 109.63103 * 294.86521 * 10 9 8 40 40 H 1.08999 * 109.46233 * 174.74013 * 10 9 8 41 41 H 1.09000 * 109.46003 * 178.49173 * 11 10 9 42 42 H 1.08993 * 109.46119 * 58.53140 * 11 10 9 43 43 H 1.09002 * 111.00392 * 324.20203 * 16 14 12 44 44 H 1.08993 * 111.00366 * 88.01856 * 16 14 12 45 45 H 1.09002 * 110.36753 * 155.84304 * 17 16 14 46 46 H 1.08992 * 110.36808 * 278.16821 * 17 16 14 47 47 H 0.97004 * 120.00782 * 179.97438 * 22 21 19 48 48 H 1.09003 * 110.06392 * 241.87007 * 27 18 17 49 49 H 1.09006 * 109.84997 * 120.61253 * 27 18 17 50 50 H 1.08997 * 109.58655 * 353.37284 * 28 8 6 51 51 H 1.09002 * 109.58383 * 113.79787 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5373 0.0022 5 6 4.9211 1.3002 0.0066 6 6 5.7667 0.8452 1.1680 7 8 5.3543 -0.0137 1.9185 8 7 6.9811 1.3925 1.3727 9 6 7.4968 2.4294 0.4685 10 6 7.9065 3.6495 1.3074 11 6 8.8969 3.2090 2.3878 12 6 8.2255 2.1918 3.3135 13 1 7.3402 2.6397 3.7649 14 6 9.2050 1.7767 4.4132 15 1 10.1045 1.3382 3.9810 16 6 8.5330 0.7880 5.4023 17 6 9.3504 1.0372 6.6944 18 7 9.6205 2.4865 6.6965 19 6 9.8867 3.2471 7.8037 20 1 10.0725 4.3058 7.6996 21 6 9.9177 2.6571 9.0599 22 7 9.6907 1.3669 9.1869 23 14 10.2801 3.6948 10.5703 24 1 10.4975 5.1056 10.1611 25 1 9.1309 3.6224 11.5080 26 1 11.5006 3.1812 11.2425 27 6 9.5613 2.9809 5.3101 28 6 7.8168 0.9597 2.5009 29 7 3.4764 -0.7563 -0.0046 30 8 2.3096 -1.0735 -0.0059 31 1 -0.3633 -1.0277 -0.0052 32 1 -0.3634 0.5092 0.8926 33 1 -0.3633 0.5183 -0.8874 34 1 2.0344 2.1271 0.0004 35 1 5.4543 1.1147 -0.9259 36 1 4.7162 2.3664 0.1020 37 1 8.3629 2.0461 -0.0711 38 1 6.7196 2.7159 -0.2402 39 1 7.0242 4.0835 1.7777 40 1 8.3776 4.3917 0.6629 41 1 9.2106 4.0766 2.9683 42 1 9.7679 2.7526 1.9177 43 1 7.4822 1.0373 5.5505 44 1 8.6439 -0.2413 5.0615 45 1 8.7669 0.7588 7.5720 46 1 10.2850 0.4771 6.6659 47 1 9.7127 0.9546 10.0647 48 1 10.5289 3.3882 5.0167 49 1 8.7920 3.7483 5.2233 50 1 7.2509 0.2760 3.1336 51 1 8.7085 0.4586 2.1240 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961120152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 08:26:32 Heat of formation + Delta-G solvation = 43.151323 kcal Electronic energy + Delta-G solvation = -30790.335718 eV Core-core repulsion = 26693.360119 eV Total energy + Delta-G solvation = -4096.975598 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -45.10809 -40.39033 -38.35079 -36.66874 -34.89567 -33.73931 -33.57718 -32.30784 -31.23500 -29.77374 -28.84213 -28.07190 -27.08654 -25.46150 -24.40389 -23.31251 -22.81447 -21.57389 -20.36657 -19.93663 -19.36350 -18.77895 -17.93336 -17.52009 -17.04805 -16.76578 -16.03647 -15.71533 -15.05637 -14.75669 -14.55404 -14.43271 -14.11227 -13.91696 -13.82574 -13.63675 -13.48287 -13.30853 -13.20396 -13.10414 -12.67710 -12.48133 -12.39455 -12.11185 -11.76626 -11.53705 -11.33213 -11.28833 -11.04415 -10.99331 -10.88677 -10.81937 -10.56096 -10.41120 -10.04945 -9.99955 -9.88879 -9.72790 -9.65718 -9.51435 -9.36254 -8.68552 -8.59669 -6.76797 -5.59769 -3.01376 1.29033 1.96529 2.51283 2.84739 2.93192 3.42142 3.47012 3.49972 3.83886 4.10187 4.38267 4.52427 4.58287 4.71669 4.75826 4.80358 4.83082 4.86347 4.98310 5.00283 5.05177 5.16031 5.18638 5.24054 5.36718 5.45055 5.50647 5.54528 5.57830 5.63099 5.64551 5.75497 5.78506 5.83718 5.95042 6.02074 6.05658 6.10688 6.31231 6.34720 6.47096 6.50878 6.67257 6.72563 6.84257 7.04691 7.26960 7.59991 7.68675 7.93038 8.06963 8.12984 8.43047 9.27720 9.88925 10.54890 11.43934 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015056 B = 0.002154 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.233755 B =12997.767924 C =13981.828325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.037 4.037 3 C -0.230 4.230 4 C 0.026 3.974 5 C -0.060 4.060 6 C 0.514 3.486 7 O -0.523 6.523 8 N -0.611 5.611 9 C 0.105 3.895 10 C -0.135 4.135 11 C -0.117 4.117 12 C -0.086 4.086 13 H 0.074 0.926 14 C -0.092 4.092 15 H 0.070 0.930 16 C -0.140 4.140 17 C 0.152 3.848 18 N -0.606 5.606 19 C -0.220 4.220 20 H 0.077 0.923 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.913 3.087 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.145 3.855 28 C 0.118 3.882 29 N -0.336 5.336 30 O 0.105 5.895 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.171 0.829 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.105 0.895 46 H 0.010 0.990 47 H 0.251 0.749 48 H 0.018 0.982 49 H 0.022 0.978 50 H 0.095 0.905 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.965 2.224 -25.772 29.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 C -0.251 4.251 4 C -0.133 4.133 5 C -0.101 4.101 6 C 0.301 3.699 7 O -0.398 6.398 8 N -0.345 5.345 9 C -0.018 4.018 10 C -0.173 4.173 11 C -0.154 4.154 12 C -0.106 4.106 13 H 0.092 0.908 14 C -0.112 4.112 15 H 0.088 0.912 16 C -0.179 4.179 17 C 0.027 3.973 18 N -0.332 5.332 19 C -0.349 4.349 20 H 0.094 0.906 21 C -0.209 4.209 22 N -0.571 5.571 23 Si 0.744 3.256 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.019 3.981 28 C -0.003 4.003 29 N -0.037 5.037 30 O 0.035 5.965 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.188 0.812 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.122 0.878 46 H 0.028 0.972 47 H 0.062 0.938 48 H 0.036 0.964 49 H 0.040 0.960 50 H 0.114 0.886 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.293 0.710 -25.145 28.451 hybrid contribution 0.095 1.475 0.775 1.669 sum -13.198 2.185 -24.370 27.800 Atomic orbital electron populations 1.20332 0.84075 1.04707 1.04016 1.24488 0.96429 0.86267 1.02861 1.22322 0.91077 1.00998 1.10750 1.22780 0.95970 0.90199 1.04366 1.20022 0.90492 1.00318 0.99236 1.20257 0.81372 0.82118 0.86166 1.90771 1.71083 1.31023 1.46958 1.48112 1.17063 1.39846 1.29506 1.21892 0.99626 0.88241 0.92034 1.22006 1.00328 0.96791 0.98155 1.21611 0.97734 0.99595 0.96489 1.21493 0.98944 0.95001 0.95122 0.90785 1.22129 0.97189 0.97663 0.94197 0.91188 1.23062 0.99808 0.97062 0.97955 1.21905 0.96180 0.84008 0.95170 1.44610 1.83068 1.05056 1.00461 1.19122 1.40029 0.91420 0.84298 0.90554 1.24798 1.02485 0.96071 0.97558 1.69825 1.56347 1.09009 1.21877 0.86011 0.77484 0.79039 0.83055 1.20581 1.21775 1.21810 1.21322 0.97058 0.93911 0.85813 1.21719 0.94225 0.97170 0.87222 1.73887 0.96411 1.16133 1.17270 1.84866 1.11362 1.33221 1.67071 0.89879 0.89177 0.89238 0.81187 0.87125 0.86697 0.91070 0.90062 0.91415 0.90733 0.90956 0.91823 0.92249 0.92527 0.87771 0.97213 0.93838 0.96405 0.96049 0.88648 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.45 36.01 0.38 0.06 16 2 C -0.04 -0.32 7.49 -35.30 -0.26 -0.59 16 3 C -0.23 -2.05 11.05 -39.38 -0.44 -2.48 16 4 C 0.03 0.31 6.10 -82.10 -0.50 -0.20 16 5 C -0.06 -0.55 4.64 -29.03 -0.13 -0.69 16 6 C 0.51 6.84 7.69 -10.99 -0.08 6.75 16 7 O -0.52 -9.53 15.01 5.55 0.08 -9.45 16 8 N -0.61 -7.09 2.97 -172.53 -0.51 -7.60 16 9 C 0.11 0.81 6.37 -3.48 -0.02 0.79 16 10 C -0.13 -1.12 6.10 -26.38 -0.16 -1.28 16 11 C -0.12 -1.30 5.01 -26.69 -0.13 -1.43 16 12 C -0.09 -1.21 1.71 -90.52 -0.16 -1.36 16 13 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 14 C -0.09 -1.60 2.49 -88.79 -0.22 -1.82 16 15 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 16 C -0.14 -2.80 5.61 -24.58 -0.14 -2.94 16 17 C 0.15 3.86 5.89 -2.53 -0.01 3.84 16 18 N -0.61 -16.03 3.40 -169.83 -0.58 -16.60 16 19 C -0.22 -6.31 10.28 -15.06 -0.15 -6.46 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 21 C -0.01 -0.40 5.49 -17.43 -0.10 -0.50 16 22 N -0.92 -27.72 10.09 55.49 0.56 -27.16 16 23 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 27 C 0.14 3.05 5.91 -2.90 -0.02 3.04 16 28 C 0.12 1.61 5.41 -3.73 -0.02 1.59 16 29 N -0.34 -4.75 11.46 33.42 0.38 -4.37 16 30 O 0.10 1.27 11.20 17.19 0.19 1.47 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.11 0.76 7.93 -51.93 -0.41 0.35 16 36 H 0.11 0.69 7.70 -51.93 -0.40 0.29 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.41 5.93 -51.93 -0.31 0.10 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.87 7.29 -51.93 -0.38 0.49 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 1.22 8.05 -51.93 -0.42 0.80 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.10 2.98 5.87 -51.93 -0.31 2.68 16 46 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.02 0.45 7.68 -51.93 -0.40 0.05 16 50 H 0.10 1.56 6.43 -51.93 -0.33 1.22 16 51 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 399.58 15.07 6.02 6.02 Total: -1.00 -36.71 399.58 -9.47 -46.18 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -8.42 Total: -2.34 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -2.18 Total: -3.69 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.15 Total: -55.73 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.28 Total: -7.99 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.71 -9.47 -46.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961120152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.329 kcal (2) G-P(sol) polarization free energy of solvation -36.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds