Wall clock time and date at job start Wed Apr 1 2020 08:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35447 * 126.77292 * 2 1 4 4 C 1.41381 * 103.98437 * 179.90961 * 3 2 1 5 5 C 1.50707 * 126.80099 * 180.16646 * 4 3 2 6 6 C 1.50694 * 109.47128 * 125.25783 * 5 4 3 7 7 O 1.21289 * 119.99958 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00280 * 179.97438 * 6 5 4 9 9 C 1.46926 * 120.62642 * 359.71521 * 8 6 5 10 10 C 1.53627 * 108.54285 * 126.37094 * 9 8 6 11 11 C 1.53043 * 109.24152 * 54.85651 * 10 9 8 12 12 C 1.53044 * 109.53713 * 298.51273 * 11 10 9 13 13 H 1.09002 * 109.49338 * 301.41309 * 12 11 10 14 14 C 1.52999 * 109.52526 * 181.33748 * 12 11 10 15 15 H 1.09004 * 110.63555 * 300.84136 * 14 12 11 16 16 C 1.55158 * 110.72019 * 177.70632 * 14 12 11 17 17 C 1.54911 * 101.57777 * 206.12904 * 16 14 12 18 18 N 1.47428 * 104.83336 * 37.00885 * 17 16 14 19 19 C 1.36939 * 125.64947 * 155.90673 * 18 17 16 20 20 H 1.07998 * 119.99940 * 179.97438 * 19 18 17 21 21 C 1.38813 * 119.99719 * 359.97438 * 19 18 17 22 22 N 1.31614 * 120.00544 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99715 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47035 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47129 * 119.99785 * 23 21 19 26 26 H 1.48501 * 109.47190 * 239.99736 * 23 21 19 27 27 C 1.47317 * 108.73454 * 335.71373 * 18 17 16 28 28 C 1.46923 * 120.63239 * 179.97438 * 8 6 5 29 29 N 1.30174 * 106.39440 * 0.35966 * 4 3 2 30 30 O 1.20914 * 111.60281 * 359.76740 * 29 4 3 31 31 H 1.09001 * 109.46953 * 179.70824 * 1 2 3 32 32 H 1.09000 * 109.47318 * 299.70422 * 1 2 3 33 33 H 1.09000 * 109.47161 * 59.71052 * 1 2 3 34 34 H 1.08002 * 128.00955 * 0.02562 * 3 2 1 35 35 H 1.09005 * 109.46623 * 245.25806 * 5 4 3 36 36 H 1.08993 * 109.46986 * 5.25261 * 5 4 3 37 37 H 1.09000 * 109.59027 * 246.20035 * 9 8 6 38 38 H 1.09002 * 109.58907 * 6.63035 * 9 8 6 39 39 H 1.08999 * 109.63103 * 294.86521 * 10 9 8 40 40 H 1.08999 * 109.46233 * 174.74013 * 10 9 8 41 41 H 1.09000 * 109.46003 * 178.49173 * 11 10 9 42 42 H 1.08993 * 109.46119 * 58.53140 * 11 10 9 43 43 H 1.09002 * 111.00392 * 324.20203 * 16 14 12 44 44 H 1.08993 * 111.00366 * 88.01856 * 16 14 12 45 45 H 1.09002 * 110.36753 * 155.84304 * 17 16 14 46 46 H 1.08992 * 110.36808 * 278.16821 * 17 16 14 47 47 H 0.97004 * 120.00782 * 179.97438 * 22 21 19 48 48 H 1.09003 * 110.06392 * 241.87007 * 27 18 17 49 49 H 1.09006 * 109.84997 * 120.61253 * 27 18 17 50 50 H 1.08997 * 109.58655 * 353.37284 * 28 8 6 51 51 H 1.09002 * 109.58383 * 113.79787 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5373 0.0022 5 6 4.9211 1.3002 0.0066 6 6 5.7667 0.8452 1.1680 7 8 5.3543 -0.0137 1.9185 8 7 6.9811 1.3925 1.3727 9 6 7.4968 2.4294 0.4685 10 6 7.9065 3.6495 1.3074 11 6 8.8969 3.2090 2.3878 12 6 8.2255 2.1918 3.3135 13 1 7.3402 2.6397 3.7649 14 6 9.2050 1.7767 4.4132 15 1 10.1045 1.3382 3.9810 16 6 8.5330 0.7880 5.4023 17 6 9.3504 1.0372 6.6944 18 7 9.6205 2.4865 6.6965 19 6 9.8867 3.2471 7.8037 20 1 10.0725 4.3058 7.6996 21 6 9.9177 2.6571 9.0599 22 7 9.6907 1.3669 9.1869 23 14 10.2801 3.6948 10.5703 24 1 10.4975 5.1056 10.1611 25 1 9.1309 3.6224 11.5080 26 1 11.5006 3.1812 11.2425 27 6 9.5613 2.9809 5.3101 28 6 7.8168 0.9597 2.5009 29 7 3.4764 -0.7563 -0.0046 30 8 2.3096 -1.0735 -0.0059 31 1 -0.3633 -1.0277 -0.0052 32 1 -0.3634 0.5092 0.8926 33 1 -0.3633 0.5183 -0.8874 34 1 2.0344 2.1271 0.0004 35 1 5.4543 1.1147 -0.9259 36 1 4.7162 2.3664 0.1020 37 1 8.3629 2.0461 -0.0711 38 1 6.7196 2.7159 -0.2402 39 1 7.0242 4.0835 1.7777 40 1 8.3776 4.3917 0.6629 41 1 9.2106 4.0766 2.9683 42 1 9.7679 2.7526 1.9177 43 1 7.4822 1.0373 5.5505 44 1 8.6439 -0.2413 5.0615 45 1 8.7669 0.7588 7.5720 46 1 10.2850 0.4771 6.6659 47 1 9.7127 0.9546 10.0647 48 1 10.5289 3.3882 5.0167 49 1 8.7920 3.7483 5.2233 50 1 7.2509 0.2760 3.1336 51 1 8.7085 0.4586 2.1240 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961120152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 08:26:30 Heat of formation + Delta-G solvation = 19.967539 kcal Electronic energy + Delta-G solvation = -30791.341042 eV Core-core repulsion = 26693.360119 eV Total energy + Delta-G solvation = -4097.980923 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -45.87732 -41.37692 -39.73371 -38.01685 -35.67929 -35.21825 -34.24320 -33.65609 -32.54511 -30.94997 -30.41396 -28.71096 -28.52073 -26.63690 -26.05091 -24.12678 -23.86347 -22.63758 -21.78737 -21.30669 -20.73880 -19.64782 -18.90302 -18.73202 -18.29228 -17.87728 -17.09146 -16.86575 -16.59033 -16.16713 -15.70973 -15.39864 -15.34205 -15.07497 -14.66763 -14.44646 -14.35364 -14.14289 -14.02044 -13.92365 -13.88324 -13.65014 -13.44062 -13.32135 -13.25989 -13.10700 -12.86130 -12.77268 -12.45431 -12.08445 -12.06961 -12.02044 -11.96140 -11.79706 -11.68895 -11.40585 -11.38424 -11.20914 -11.00872 -10.78539 -10.70074 -10.19391 -9.63417 -8.90562 -7.79090 -5.24060 0.60157 1.23476 1.43612 1.45548 1.55922 1.57322 2.01076 2.32376 2.47850 3.14750 3.30095 3.43960 3.61219 3.67213 3.73906 3.78765 3.92715 4.10354 4.14934 4.17155 4.21517 4.24064 4.33205 4.36742 4.41828 4.50340 4.56005 4.61575 4.67409 4.68810 4.76383 4.80131 4.84471 4.88718 4.91204 4.92361 4.98949 5.04697 5.06584 5.16062 5.19264 5.29936 5.35917 5.39778 5.45285 5.53310 5.55754 5.61895 5.79048 6.28244 6.39398 7.08182 7.13733 7.39795 7.76647 8.41679 9.23317 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015056 B = 0.002154 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.233755 B =12997.767924 C =13981.828325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.039 4.039 3 C -0.234 4.234 4 C 0.011 3.989 5 C -0.053 4.053 6 C 0.506 3.494 7 O -0.586 6.586 8 N -0.608 5.608 9 C 0.099 3.901 10 C -0.128 4.128 11 C -0.115 4.115 12 C -0.072 4.072 13 H 0.052 0.948 14 C -0.077 4.077 15 H 0.084 0.916 16 C -0.126 4.126 17 C 0.155 3.845 18 N -0.630 5.630 19 C -0.237 4.237 20 H 0.083 0.917 21 C -0.074 4.074 22 N -0.953 5.953 23 Si 0.983 3.017 24 H -0.263 1.263 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.143 3.857 28 C 0.122 3.878 29 N -0.387 5.387 30 O 0.079 5.921 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.204 0.796 35 H 0.139 0.861 36 H 0.154 0.846 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.061 0.939 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.048 0.952 44 H 0.073 0.927 45 H 0.066 0.934 46 H -0.013 1.013 47 H 0.246 0.754 48 H 0.026 0.974 49 H 0.024 0.976 50 H 0.060 0.940 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.419 5.061 -28.846 32.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 C -0.256 4.256 4 C -0.148 4.148 5 C -0.093 4.093 6 C 0.294 3.706 7 O -0.466 6.466 8 N -0.340 5.340 9 C -0.022 4.022 10 C -0.166 4.166 11 C -0.153 4.153 12 C -0.092 4.092 13 H 0.070 0.930 14 C -0.096 4.096 15 H 0.102 0.898 16 C -0.165 4.165 17 C 0.029 3.971 18 N -0.356 5.356 19 C -0.366 4.366 20 H 0.101 0.899 21 C -0.266 4.266 22 N -0.603 5.603 23 Si 0.811 3.189 24 H -0.188 1.188 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.018 3.982 28 C -0.001 4.001 29 N -0.093 5.093 30 O 0.013 5.987 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.133 0.867 34 H 0.221 0.779 35 H 0.157 0.843 36 H 0.172 0.828 37 H 0.107 0.893 38 H 0.136 0.864 39 H 0.080 0.920 40 H 0.124 0.876 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.005 0.995 47 H 0.056 0.944 48 H 0.044 0.956 49 H 0.042 0.958 50 H 0.078 0.922 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.751 3.591 -28.281 31.652 hybrid contribution 0.222 0.606 1.733 1.850 sum -13.530 4.196 -26.548 30.091 Atomic orbital electron populations 1.20563 0.80999 1.05645 1.05737 1.25378 0.98143 0.85543 1.01206 1.22769 0.89838 1.02526 1.10426 1.23399 0.97979 0.89942 1.03459 1.20199 0.88968 1.01875 0.98250 1.21054 0.81742 0.81225 0.86548 1.90749 1.72502 1.33891 1.49411 1.48219 1.16400 1.40276 1.29107 1.22274 1.01525 0.86687 0.91699 1.21988 0.99402 0.97635 0.97592 1.21609 0.98805 0.98163 0.96716 1.21308 0.97281 0.96032 0.94592 0.92951 1.22053 0.98305 0.95162 0.94073 0.89762 1.22860 0.98356 0.99015 0.96240 1.21667 0.95177 0.83846 0.96367 1.44952 1.83055 1.05377 1.02224 1.19537 1.39554 0.92066 0.85419 0.89908 1.25726 1.02894 0.97349 1.00657 1.70099 1.57433 1.10681 1.22060 0.84929 0.76801 0.78203 0.78924 1.18758 1.21892 1.21876 1.21499 0.97447 0.95347 0.83900 1.21475 0.94469 0.96282 0.87846 1.73875 0.97513 1.18009 1.19865 1.84797 1.11413 1.34713 1.67792 0.89431 0.87924 0.86706 0.77906 0.84337 0.82818 0.89284 0.86428 0.92038 0.87612 0.91840 0.90473 0.93358 0.90806 0.91549 0.99516 0.94435 0.95562 0.95765 0.92153 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.45 71.24 0.74 0.28 16 2 C -0.04 -0.66 7.49 25.04 0.19 -0.47 16 3 C -0.23 -3.71 11.05 22.40 0.25 -3.46 16 4 C 0.01 0.25 6.10 43.58 0.27 0.51 16 5 C -0.05 -0.82 4.64 29.10 0.14 -0.69 16 6 C 0.51 12.90 7.69 87.66 0.67 13.57 16 7 O -0.59 -22.11 15.01 -3.06 -0.05 -22.15 16 8 N -0.61 -12.80 2.97 -818.15 -2.43 -15.23 16 9 C 0.10 1.07 6.37 86.51 0.55 1.62 16 10 C -0.13 -1.57 6.10 30.82 0.19 -1.39 16 11 C -0.12 -2.23 5.01 30.62 0.15 -2.07 16 12 C -0.07 -1.95 1.71 -10.73 -0.02 -1.97 16 13 H 0.05 1.65 8.12 -2.39 -0.02 1.63 16 14 C -0.08 -2.63 2.49 -9.61 -0.02 -2.66 16 15 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 16 C -0.13 -5.22 5.61 31.99 0.18 -5.04 16 17 C 0.15 8.23 5.89 86.85 0.51 8.74 16 18 N -0.63 -34.19 3.40 -691.23 -2.35 -36.54 16 19 C -0.24 -13.81 10.28 84.03 0.86 -12.95 16 20 H 0.08 4.59 7.83 -2.91 -0.02 4.56 16 21 C -0.07 -4.39 5.49 84.86 0.47 -3.93 16 22 N -0.95 -59.65 10.09 21.65 0.22 -59.44 16 23 Si 0.98 47.19 29.55 68.60 2.03 49.22 16 24 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 27 C 0.14 6.00 5.91 86.67 0.51 6.51 16 28 C 0.12 3.23 5.41 86.35 0.47 3.69 16 29 N -0.39 -11.23 11.46 -49.57 -0.57 -11.80 16 30 O 0.08 1.98 11.20 71.69 0.80 2.79 16 31 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.20 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.14 1.35 7.93 -2.38 -0.02 1.34 16 36 H 0.15 1.11 7.70 -2.39 -0.02 1.09 16 37 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.12 0.47 5.93 -2.39 -0.01 0.45 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 1.36 7.29 -2.39 -0.02 1.34 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.05 2.08 8.05 -2.39 -0.02 2.07 16 44 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 45 H 0.07 4.05 5.87 -2.39 -0.01 4.03 16 46 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 47 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 48 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.02 1.01 7.68 -2.38 -0.02 0.99 16 50 H 0.06 2.04 6.43 -2.39 -0.02 2.02 16 51 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -87.64 399.58 4.68 -82.97 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.92 Total: 9.89 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 6.10 Total: 0.30 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -5.13 Total: -123.01 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: 0.76 Total: -19.37 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -87.64 4.68 -82.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961120152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.935 kcal (2) G-P(sol) polarization free energy of solvation -87.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds