Wall clock time and date at job start Wed Apr 1 2020 07:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33493 * 126.82670 * 2 1 4 4 N 1.20661 * 113.15404 * 180.31029 * 3 2 1 5 5 C 1.30004 * 112.30421 * 359.71844 * 4 3 2 6 6 C 1.50700 * 127.33896 * 180.02562 * 5 4 3 7 7 C 1.52998 * 117.49702 * 8.70437 * 6 5 4 8 8 C 1.53003 * 117.49726 * 300.04777 * 6 5 4 9 9 C 1.37355 * 126.83107 * 179.83580 * 2 1 3 10 10 C 1.47401 * 128.56590 * 359.97438 * 9 2 1 11 11 O 1.21603 * 119.99858 * 269.68077 * 10 9 2 12 12 N 1.34769 * 119.99956 * 89.68056 * 10 9 2 13 13 C 1.46503 * 120.00384 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47729 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.42651 * 295.07245 * 14 13 12 16 16 C 1.54309 * 109.19268 * 175.34614 * 14 13 12 17 17 C 1.47089 * 110.29212 * 168.69296 * 16 14 13 18 18 C 1.52563 * 114.33087 * 62.73792 * 17 16 14 19 19 C 1.50882 * 109.35404 * 274.97816 * 18 17 16 20 20 C 1.53948 * 110.09741 * 91.88158 * 19 18 17 21 21 N 1.44582 * 109.44425 * 54.99787 * 14 13 12 22 22 C 1.36929 * 118.64705 * 30.76546 * 21 14 13 23 23 H 1.08006 * 120.00119 * 28.69314 * 22 21 14 24 24 C 1.38814 * 120.00274 * 208.69099 * 22 21 14 25 25 N 1.31616 * 119.99931 * 25.68214 * 24 22 21 26 26 Si 1.86799 * 120.00027 * 205.68118 * 24 22 21 27 27 H 1.48504 * 109.47069 * 180.02562 * 26 24 22 28 28 H 1.48501 * 109.47220 * 60.00334 * 26 24 22 29 29 H 1.48501 * 109.47307 * 299.99984 * 26 24 22 30 30 H 1.09007 * 109.46814 * 270.16444 * 1 2 3 31 31 H 1.08996 * 109.47145 * 30.16576 * 1 2 3 32 32 H 1.08998 * 109.46639 * 150.17006 * 1 2 3 33 33 H 1.09004 * 115.55313 * 154.37403 * 6 5 4 34 34 H 1.09000 * 117.49867 * 0.02562 * 7 6 5 35 35 H 1.08996 * 117.49916 * 145.01770 * 7 6 5 36 36 H 1.09004 * 117.49336 * 214.97588 * 8 6 5 37 37 H 1.08997 * 117.50103 * 359.97329 * 8 6 5 38 38 H 0.97006 * 120.00147 * 0.02562 * 12 10 9 39 39 H 1.09003 * 109.47091 * 59.99394 * 13 12 10 40 40 H 1.09003 * 109.46554 * 299.99942 * 13 12 10 41 41 H 1.09004 * 109.39623 * 48.40138 * 16 14 13 42 42 H 1.09000 * 109.14314 * 288.82399 * 16 14 13 43 43 H 1.08998 * 108.51435 * 301.47802 * 17 16 14 44 44 H 1.09008 * 108.38422 * 183.90080 * 17 16 14 45 45 H 1.08998 * 109.49337 * 155.01452 * 18 17 16 46 46 H 1.09004 * 109.49017 * 34.93809 * 18 17 16 47 47 H 1.09007 * 109.36407 * 331.69169 * 19 18 17 48 48 H 1.08992 * 109.26797 * 212.01508 * 19 18 17 49 49 H 1.09001 * 108.94814 * 198.75491 * 20 19 18 50 50 H 1.08995 * 108.94394 * 80.12701 * 20 19 18 51 51 H 0.97006 * 120.00028 * 5.94911 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4796 0.7833 -0.0060 5 6 3.6747 -0.5020 -0.0051 6 6 4.9965 -1.2258 -0.0107 7 6 6.2614 -0.3882 0.1870 8 6 5.9365 -0.9708 -1.1907 9 6 2.3304 -1.0994 0.0032 10 6 1.9588 -2.5258 0.0078 11 8 1.8116 -3.1123 1.0628 12 7 1.7822 -3.1799 -1.1573 13 6 1.4123 -4.5974 -1.1528 14 6 1.2749 -5.0933 -2.5936 15 1 0.4443 -4.5786 -3.0765 16 6 1.0008 -6.6119 -2.5835 17 6 0.5992 -7.0667 -3.9234 18 6 1.6676 -6.8812 -4.9966 19 6 1.5830 -5.4799 -5.5495 20 6 2.5219 -4.5446 -4.7661 21 7 2.4968 -4.8184 -3.3158 22 6 3.6803 -4.8173 -2.6272 23 1 3.7935 -5.4328 -1.7469 24 6 4.7348 -4.0252 -3.0604 25 7 4.4962 -2.9404 -3.7664 26 14 6.4924 -4.4990 -2.6413 27 1 7.4256 -3.4967 -3.2156 28 1 6.7929 -5.8380 -3.2088 29 1 6.6561 -4.5386 -1.1658 30 1 -0.3633 0.0029 1.0277 31 1 -0.3633 0.8885 -0.5164 32 1 -0.3632 -0.8915 -0.5112 33 1 4.9851 -2.2287 0.4161 34 1 6.1376 0.6863 0.3216 35 1 7.0824 -0.8401 0.7437 36 1 6.5439 -1.8059 -1.5398 37 1 5.5988 -0.2799 -1.9631 38 1 1.9000 -2.7121 -1.9989 39 1 0.4623 -4.7234 -0.6334 40 1 2.1846 -5.1727 -0.6422 41 1 0.2030 -6.8310 -1.8738 42 1 1.9070 -7.1366 -2.2809 43 1 -0.2920 -6.5154 -4.2233 44 1 0.3467 -8.1255 -3.8657 45 1 1.5046 -7.5996 -5.8000 46 1 2.6534 -7.0409 -4.5598 47 1 0.5582 -5.1185 -5.4631 48 1 1.8756 -5.4892 -6.5994 49 1 2.2162 -3.5123 -4.9367 50 1 3.5396 -4.6760 -5.1336 51 1 3.5829 -2.6469 -3.9109 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968954469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:53:23 Heat of formation + Delta-G solvation = 48.893288 kcal Electronic energy + Delta-G solvation = -33196.851008 eV Core-core repulsion = 29100.124400 eV Total energy + Delta-G solvation = -4096.726608 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 50.75 seconds Orbital eigenvalues (eV) -45.94308 -40.80732 -39.66820 -38.50388 -36.10195 -35.44837 -34.82368 -33.89607 -33.25669 -32.30849 -29.27442 -28.43261 -27.41735 -25.97675 -25.00780 -24.85516 -23.52477 -23.35661 -21.73703 -21.17450 -20.80569 -20.32942 -19.29529 -18.84163 -18.43496 -17.61496 -17.17287 -16.97898 -16.46059 -16.15929 -15.92380 -15.66232 -15.61949 -15.36914 -14.99724 -14.56176 -14.47001 -14.20445 -14.08960 -13.78063 -13.68458 -13.55863 -13.42814 -13.09711 -12.91894 -12.80058 -12.62840 -12.58195 -12.44964 -12.24487 -12.00108 -11.95195 -11.68961 -11.47431 -11.45583 -11.38790 -11.33881 -11.03753 -10.98762 -10.55828 -10.39651 -10.22791 -9.94719 -8.70175 -7.98508 -5.17577 0.28836 0.76404 1.35459 1.54106 1.57505 1.74133 1.87618 2.38045 2.66748 2.77535 2.93565 3.28084 3.32576 3.56510 3.76675 3.82688 3.88233 3.95088 3.96249 4.01861 4.04116 4.20579 4.33169 4.38142 4.39443 4.52664 4.55659 4.58211 4.59939 4.67826 4.70810 4.75768 4.89192 4.90354 4.97416 5.02012 5.03683 5.06311 5.11074 5.15143 5.15712 5.26162 5.35176 5.43962 5.50489 5.54840 5.58942 5.69418 6.08901 6.52127 6.65653 7.14791 7.17964 7.29510 7.97766 8.34845 9.22299 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010272 B = 0.005049 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.184531 B = 5544.806932 C = 7140.072274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.028 3.972 3 O 0.100 5.900 4 N -0.371 5.371 5 C 0.087 3.913 6 C -0.105 4.105 7 C -0.141 4.141 8 C -0.134 4.134 9 C -0.271 4.271 10 C 0.600 3.400 11 O -0.581 6.581 12 N -0.670 5.670 13 C 0.135 3.865 14 C 0.176 3.824 15 H 0.058 0.942 16 C -0.127 4.127 17 C -0.100 4.100 18 C -0.104 4.104 19 C -0.126 4.126 20 C 0.167 3.833 21 N -0.591 5.591 22 C -0.335 4.335 23 H 0.027 0.973 24 C -0.032 4.032 25 N -0.915 5.915 26 Si 1.061 2.939 27 H -0.287 1.287 28 H -0.298 1.298 29 H -0.290 1.290 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.404 0.596 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.074 0.926 42 H 0.038 0.962 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.040 0.960 47 H 0.064 0.936 48 H 0.062 0.938 49 H 0.002 0.998 50 H 0.031 0.969 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.663 2.347 1.699 10.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.035 4.035 3 O 0.039 5.961 4 N -0.077 5.077 5 C -0.074 4.074 6 C -0.124 4.124 7 C -0.178 4.178 8 C -0.172 4.172 9 C -0.278 4.278 10 C 0.385 3.615 11 O -0.463 6.463 12 N -0.317 5.317 13 C 0.010 3.990 14 C 0.068 3.932 15 H 0.076 0.924 16 C -0.168 4.168 17 C -0.137 4.137 18 C -0.141 4.141 19 C -0.165 4.165 20 C 0.042 3.958 21 N -0.314 5.314 22 C -0.465 4.465 23 H 0.045 0.955 24 C -0.233 4.233 25 N -0.556 5.556 26 Si 0.892 3.108 27 H -0.212 1.212 28 H -0.225 1.225 29 H -0.217 1.217 30 H 0.130 0.870 31 H 0.138 0.862 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.141 0.859 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.240 0.760 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.059 0.941 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.020 0.980 50 H 0.050 0.950 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.414 3.401 2.157 8.438 hybrid contribution -1.037 -1.324 -0.100 1.685 sum -8.451 2.077 2.057 8.942 Atomic orbital electron populations 1.20696 0.79762 1.06450 1.06154 1.25259 0.97437 0.83849 0.96995 1.84467 1.10797 1.32984 1.67878 1.73455 0.96558 1.16010 1.21674 1.23809 0.94775 0.88755 1.00038 1.20130 0.85860 0.99027 1.07424 1.23164 0.96030 0.99833 0.98816 1.22717 1.00642 1.02733 0.91104 1.21908 0.93336 0.95498 1.17050 1.16923 0.76371 0.84375 0.83822 1.90722 1.54098 1.69083 1.32353 1.45623 1.66826 1.11531 1.07672 1.21544 0.98702 0.80348 0.98377 1.20546 0.88946 0.94271 0.89401 0.92392 1.21179 1.00467 0.97107 0.98031 1.20268 0.98096 1.00959 0.94386 1.20905 0.99191 0.96172 0.97880 1.21835 0.99760 0.95987 0.98898 1.21018 0.97287 0.94427 0.83061 1.43744 1.02261 1.82944 1.02483 1.19566 0.92830 1.22248 1.11880 0.95483 1.25826 1.04263 0.93409 0.99848 1.70877 1.22616 1.19583 1.42521 0.83586 0.76113 0.75334 0.75795 1.21238 1.22549 1.21696 0.86962 0.86151 0.88807 0.87735 0.87486 0.85937 0.89295 0.89617 0.76036 0.90866 0.94149 0.90738 0.94322 0.91774 0.92016 0.91699 0.94126 0.91708 0.91885 0.97975 0.95033 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.33 71.24 0.74 -0.56 16 2 C 0.03 0.82 7.55 25.48 0.19 1.01 16 3 O 0.10 3.10 11.06 76.98 0.85 3.95 16 4 N -0.37 -13.25 11.71 -44.78 -0.52 -13.78 16 5 C 0.09 3.36 7.08 45.16 0.32 3.68 16 6 C -0.11 -4.07 6.31 -11.54 -0.07 -4.14 16 7 C -0.14 -4.45 10.16 30.62 0.31 -4.14 16 8 C -0.13 -5.13 10.24 30.62 0.31 -4.81 16 9 C -0.27 -9.98 6.24 -18.74 -0.12 -10.10 16 10 C 0.60 24.10 7.60 86.66 0.66 24.76 16 11 O -0.58 -26.43 17.11 -4.04 -0.07 -26.49 16 12 N -0.67 -25.72 4.72 -466.40 -2.20 -27.92 16 13 C 0.13 4.93 4.50 86.38 0.39 5.32 16 14 C 0.18 6.06 2.17 45.79 0.10 6.16 16 15 H 0.06 1.85 8.06 -2.39 -0.02 1.83 16 16 C -0.13 -3.86 5.04 29.20 0.15 -3.71 16 17 C -0.10 -2.65 5.15 28.61 0.15 -2.50 16 18 C -0.10 -3.13 5.51 29.76 0.16 -2.96 16 19 C -0.13 -3.94 5.71 30.23 0.17 -3.77 16 20 C 0.17 6.78 4.54 86.49 0.39 7.17 16 21 N -0.59 -24.40 1.63 -675.32 -1.10 -25.50 16 22 C -0.34 -16.32 7.49 84.04 0.63 -15.69 16 23 H 0.03 1.45 6.84 -2.91 -0.02 1.43 16 24 C -0.03 -1.63 4.56 84.86 0.39 -1.24 16 25 N -0.92 -47.78 12.61 21.65 0.27 -47.50 16 26 Si 1.06 49.13 28.21 68.60 1.94 51.07 16 27 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 28 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 29 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 30 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.09 1.66 8.11 -2.39 -0.02 1.64 16 33 H 0.10 4.38 8.14 -2.39 -0.02 4.36 16 34 H 0.11 3.18 7.97 -2.39 -0.02 3.17 16 35 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 36 H 0.09 3.64 6.22 -2.39 -0.01 3.63 16 37 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 38 H 0.40 16.24 8.06 -92.70 -0.75 15.49 16 39 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.04 1.74 6.85 -2.39 -0.02 1.72 16 41 H 0.07 1.91 8.10 -2.39 -0.02 1.89 16 42 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.06 1.53 7.36 -2.39 -0.02 1.51 16 44 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 46 H 0.04 1.51 7.48 -2.38 -0.02 1.49 16 47 H 0.06 1.82 7.32 -2.38 -0.02 1.80 16 48 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.00 0.10 7.16 -2.39 -0.02 0.08 16 50 H 0.03 1.50 6.80 -2.39 -0.02 1.48 16 51 H 0.26 13.59 6.43 -92.70 -0.60 12.99 16 Total: -1.00 -61.40 402.71 4.40 -56.99 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: 0.37 Total: 34.70 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 4.87 Total: -5.52 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -3.55 Total: -114.70 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: 0.78 Total: -22.55 kcal Atomic # 14 Polarization: 49.13 SS G_CDS: 1.94 Total: 51.07 kcal Total: -61.40 4.40 -56.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968954469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.886 kcal (2) G-P(sol) polarization free energy of solvation -61.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 50.75 seconds