Wall clock time and date at job start Wed Apr 1 2020 08:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35451 * 126.77668 * 2 1 4 4 C 1.41380 * 103.98649 * 180.22754 * 3 2 1 5 5 C 1.50696 * 126.80347 * 179.77327 * 4 3 2 6 6 C 1.52996 * 109.47025 * 124.99658 * 5 4 3 7 7 C 1.50706 * 109.47084 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99938 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99899 * 179.97438 * 7 6 5 10 10 C 1.48241 * 125.78663 * 0.02562 * 9 7 6 11 11 C 1.52338 * 105.86522 * 176.79541 * 10 9 7 12 12 H 1.08996 * 109.88409 * 272.32881 * 11 10 9 13 13 C 1.51438 * 117.44201 * 145.30112 * 11 10 9 14 14 C 1.51854 * 108.06815 * 182.02179 * 13 11 10 15 15 C 1.52523 * 111.84651 * 56.52903 * 14 13 11 16 16 C 1.53814 * 111.70118 * 306.38877 * 15 14 13 17 17 H 1.09000 * 109.94453 * 298.15928 * 16 15 14 18 18 N 1.46492 * 110.01787 * 176.95211 * 16 15 14 19 19 C 1.36943 * 120.00138 * 87.38190 * 18 16 15 20 20 H 1.08004 * 119.99768 * 359.97438 * 19 18 16 21 21 C 1.38808 * 120.00395 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99902 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00285 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46683 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46974 * 119.99701 * 23 21 19 26 26 H 1.48492 * 109.47202 * 240.00082 * 23 21 19 27 27 C 1.51621 * 107.01906 * 57.53674 * 16 15 14 28 28 H 1.08990 * 110.50641 * 55.19340 * 27 16 15 29 29 C 1.48659 * 125.77996 * 179.71616 * 9 7 6 30 30 N 1.30187 * 106.39102 * 359.62830 * 4 3 2 31 31 O 1.20916 * 111.60590 * 0.39612 * 30 4 3 32 32 H 1.08993 * 109.47140 * 90.00125 * 1 2 3 33 33 H 1.09003 * 109.46799 * 210.00794 * 1 2 3 34 34 H 1.09005 * 109.46817 * 330.00360 * 1 2 3 35 35 H 1.08002 * 128.00468 * 359.95534 * 3 2 1 36 36 H 1.09006 * 109.46793 * 244.99112 * 5 4 3 37 37 H 1.08997 * 109.47203 * 4.99609 * 5 4 3 38 38 H 1.08999 * 109.47521 * 299.99480 * 6 5 4 39 39 H 1.08995 * 109.47888 * 60.00117 * 6 5 4 40 40 H 1.08990 * 110.17079 * 295.89716 * 10 9 7 41 41 H 1.08998 * 110.16568 * 57.70045 * 10 9 7 42 42 H 1.09001 * 109.94129 * 300.62802 * 13 11 10 43 43 H 1.08994 * 109.93959 * 61.86312 * 13 11 10 44 44 H 1.09002 * 108.60175 * 296.14629 * 14 13 11 45 45 H 1.08999 * 109.29203 * 177.38121 * 14 13 11 46 46 H 1.09001 * 109.03611 * 185.81452 * 15 14 13 47 47 H 1.08996 * 108.97363 * 66.91645 * 15 14 13 48 48 H 0.97003 * 120.00175 * 267.38533 * 18 16 15 49 49 H 0.96994 * 119.99932 * 180.02562 * 22 21 19 50 50 H 1.08998 * 110.62837 * 274.12724 * 29 9 7 51 51 H 1.08997 * 110.62874 * 37.14646 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 -0.0054 5 6 4.9211 1.3000 -0.0125 6 6 5.7852 0.8461 1.1656 7 6 7.0852 1.6084 1.1582 8 8 7.2996 2.4332 0.2952 9 7 8.0095 1.3736 2.1105 10 6 7.8826 0.3989 3.2202 11 6 9.2079 0.4464 3.9699 12 1 9.9138 -0.2514 3.5195 13 6 9.1676 0.2546 5.4715 14 6 10.5840 0.3908 6.0019 15 6 11.2074 1.7290 5.6186 16 6 11.1345 1.9768 4.1022 17 1 11.6967 1.2077 3.5724 18 7 11.6764 3.3000 3.7838 19 6 13.0183 3.4543 3.5584 20 1 13.6772 2.6005 3.6159 21 6 13.5319 4.7082 3.2572 22 7 12.7290 5.7489 3.1876 23 14 15.3624 4.9188 2.9505 24 1 16.0414 3.6052 3.0867 25 1 15.5770 5.4465 1.5791 26 1 15.9239 5.8719 3.9411 27 6 9.6711 1.9094 3.7114 28 1 9.0845 2.6097 4.3058 29 6 9.3318 2.0437 2.2224 30 7 3.4763 -0.7565 0.0000 31 8 2.3095 -1.0737 0.0001 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3633 -0.8899 0.5140 34 1 -0.3633 0.8901 0.5138 35 1 2.0345 2.1271 -0.0007 36 1 5.4499 1.1080 -0.9462 37 1 4.7167 2.3669 0.0766 38 1 5.2565 1.0381 2.0993 39 1 5.9896 -0.2208 1.0766 40 1 7.0659 0.6871 3.8820 41 1 7.7108 -0.6017 2.8236 42 1 8.5461 1.0249 5.9281 43 1 8.7723 -0.7329 5.7096 44 1 11.1895 -0.4153 5.5875 45 1 10.5718 0.3022 7.0882 46 1 12.2518 1.7369 5.9303 47 1 10.6762 2.5283 6.1352 48 1 11.0847 4.0669 3.7326 49 1 13.0878 6.6250 2.9768 50 1 10.0743 1.5328 1.6093 51 1 9.2555 3.0935 1.9396 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992816409.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 08:02:04 Heat of formation + Delta-G solvation = 22.198089 kcal Electronic energy + Delta-G solvation = -30364.326253 eV Core-core repulsion = 26266.442054 eV Total energy + Delta-G solvation = -4097.884199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 11.92 seconds Orbital eigenvalues (eV) -45.20051 -40.42239 -38.77014 -35.71829 -35.39127 -34.02919 -33.87626 -31.93240 -31.47148 -30.40181 -28.94839 -28.18553 -26.86724 -25.91014 -24.15798 -23.33570 -23.07081 -20.94953 -20.37048 -20.06286 -19.74957 -19.05980 -17.90403 -17.59798 -17.17367 -16.71233 -16.08948 -15.53011 -14.97555 -14.92308 -14.56726 -14.28648 -14.23777 -14.13014 -13.73001 -13.70113 -13.50078 -13.15790 -13.08068 -12.89592 -12.67781 -12.55207 -12.36308 -12.32247 -12.09615 -11.84897 -11.75797 -11.43328 -11.14192 -10.99365 -10.89870 -10.76210 -10.52336 -10.31221 -10.25404 -10.16884 -10.12579 -9.82371 -9.73016 -9.60473 -9.45466 -8.89024 -8.52357 -6.95879 -5.75711 -3.04875 1.15929 1.93108 2.71996 2.79674 3.00891 3.44030 3.49575 3.51914 3.88488 4.09020 4.37377 4.57209 4.58279 4.64992 4.75819 4.78920 4.84800 4.91611 4.94691 4.99870 5.12593 5.22246 5.26877 5.31730 5.39161 5.41446 5.43806 5.51113 5.56912 5.59491 5.68280 5.72570 5.74611 5.84367 5.86325 5.90375 5.94588 6.07087 6.11700 6.15795 6.25913 6.32163 6.42996 6.54315 6.60687 6.62945 6.86077 7.08027 7.62446 7.71311 8.00336 8.24414 8.42232 9.53777 10.10416 10.44937 11.46726 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016497 B = 0.002055 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.868104 B =13621.756030 C =14879.473533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.036 4.036 3 C -0.231 4.231 4 C 0.024 3.976 5 C -0.026 4.026 6 C -0.129 4.129 7 C 0.527 3.473 8 O -0.541 6.541 9 N -0.622 5.622 10 C 0.112 3.888 11 C -0.107 4.107 12 H 0.083 0.917 13 C -0.099 4.099 14 C -0.115 4.115 15 C -0.138 4.138 16 C 0.196 3.804 17 H 0.052 0.948 18 N -0.722 5.722 19 C -0.239 4.239 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.102 4.102 28 H 0.079 0.921 29 C 0.124 3.876 30 N -0.364 5.364 31 O 0.097 5.903 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.171 0.829 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.071 0.929 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.319 -14.545 -0.572 28.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 C -0.252 4.252 4 C -0.134 4.134 5 C -0.065 4.065 6 C -0.170 4.170 7 C 0.315 3.685 8 O -0.418 6.418 9 N -0.357 5.357 10 C -0.011 4.011 11 C -0.127 4.127 12 H 0.101 0.899 13 C -0.137 4.137 14 C -0.153 4.153 15 C -0.179 4.179 16 C 0.085 3.915 17 H 0.070 0.930 18 N -0.362 5.362 19 C -0.370 4.370 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.122 4.122 28 H 0.098 0.902 29 C 0.003 3.997 30 N -0.069 5.069 31 O 0.031 5.969 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.189 0.811 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.218 0.782 49 H 0.064 0.936 50 H 0.089 0.911 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.207 -15.120 -1.142 27.721 hybrid contribution 0.533 1.225 -0.027 1.336 sum -22.674 -13.895 -1.169 26.618 Atomic orbital electron populations 1.20338 0.84036 1.04665 1.04108 1.24525 0.96411 0.86278 1.02713 1.22474 0.91326 1.01103 1.10337 1.23626 0.97446 0.90025 1.02346 1.19752 0.88261 0.99017 0.99456 1.21569 0.93685 1.01483 1.00260 1.20149 0.84645 0.83153 0.80568 1.90734 1.79272 1.35171 1.36673 1.49255 1.18115 1.40707 1.27588 1.21736 0.98574 0.92280 0.88494 1.21859 0.95992 0.98672 0.96170 0.89873 1.20908 0.98088 1.01198 0.93457 1.21196 0.95352 0.98926 0.99850 1.22321 1.00679 0.95178 0.99702 1.19953 0.89395 0.89836 0.92305 0.93034 1.42405 1.06285 1.03987 1.83496 1.19263 0.84366 0.93605 1.39768 0.91145 1.24740 0.97683 0.95770 1.02675 1.69668 1.33552 0.99149 1.55518 0.86152 0.85332 0.77464 0.77452 1.20589 1.21897 1.21946 1.22424 0.99389 0.95487 0.94924 0.90227 1.21995 0.82354 0.98786 0.96573 1.73840 0.96793 1.16370 1.19852 1.84823 1.11341 1.33178 1.67576 0.89422 0.89831 0.89013 0.81100 0.88931 0.88613 0.88952 0.88591 0.91454 0.91387 0.91861 0.92106 0.92648 0.92603 0.91986 0.92777 0.78205 0.93559 0.91074 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.23 10.45 36.01 0.38 0.15 16 2 C -0.04 -0.26 7.49 -35.30 -0.26 -0.53 16 3 C -0.23 -1.89 11.05 -39.38 -0.44 -2.33 16 4 C 0.02 0.25 6.59 -82.10 -0.54 -0.29 16 5 C -0.03 -0.29 5.10 -27.89 -0.14 -0.43 16 6 C -0.13 -1.42 4.88 -27.88 -0.14 -1.56 16 7 C 0.53 7.84 7.86 -10.98 -0.09 7.75 16 8 O -0.54 -10.19 16.27 5.56 0.09 -10.10 16 9 N -0.62 -8.95 3.38 -170.72 -0.58 -9.53 16 10 C 0.11 1.24 6.23 -3.42 -0.02 1.22 16 11 C -0.11 -1.30 2.32 -90.35 -0.21 -1.51 16 12 H 0.08 1.02 7.97 -51.93 -0.41 0.61 16 13 C -0.10 -1.07 5.57 -28.10 -0.16 -1.23 16 14 C -0.11 -1.44 5.79 -27.56 -0.16 -1.60 16 15 C -0.14 -2.29 5.47 -26.55 -0.15 -2.44 16 16 C 0.20 3.66 2.55 -68.21 -0.17 3.48 16 17 H 0.05 1.00 7.94 -51.93 -0.41 0.58 16 18 N -0.72 -17.48 5.10 -53.70 -0.27 -17.75 16 19 C -0.24 -6.50 9.95 -15.06 -0.15 -6.65 16 20 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 23 Si 0.90 22.45 29.55 -169.99 -5.02 17.43 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 C -0.10 -1.61 1.98 -89.77 -0.18 -1.79 16 28 H 0.08 1.30 8.03 -51.93 -0.42 0.89 16 29 C 0.12 2.11 6.55 -2.69 -0.02 2.10 16 30 N -0.36 -4.23 12.05 33.43 0.40 -3.83 16 31 O 0.10 0.97 11.20 17.17 0.19 1.17 16 32 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 35 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 37 H 0.10 1.00 8.09 -51.93 -0.42 0.58 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.69 8.04 -51.93 -0.42 0.27 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.38 10.05 7.81 -40.82 -0.32 9.74 16 49 H 0.25 7.47 8.31 -40.82 -0.34 7.14 16 50 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 51 H 0.08 1.68 8.07 -51.93 -0.42 1.26 16 LS Contribution 411.29 15.07 6.20 6.20 Total: -1.00 -33.40 411.29 -9.50 -42.90 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -8.70 Total: 7.01 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.54 Total: -6.10 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.28 Total: -58.51 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.28 Total: -8.93 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.40 -9.50 -42.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992816409.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.097 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.93 seconds