Wall clock time and date at job start Wed Apr 1 2020 08:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35451 * 126.77668 * 2 1 4 4 C 1.41380 * 103.98649 * 180.22754 * 3 2 1 5 5 C 1.50696 * 126.80347 * 179.77327 * 4 3 2 6 6 C 1.52996 * 109.47025 * 124.99658 * 5 4 3 7 7 C 1.50706 * 109.47084 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99938 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99899 * 179.97438 * 7 6 5 10 10 C 1.48241 * 125.78663 * 0.02562 * 9 7 6 11 11 C 1.52338 * 105.86522 * 176.79541 * 10 9 7 12 12 H 1.08996 * 109.88409 * 272.32881 * 11 10 9 13 13 C 1.51438 * 117.44201 * 145.30112 * 11 10 9 14 14 C 1.51854 * 108.06815 * 182.02179 * 13 11 10 15 15 C 1.52523 * 111.84651 * 56.52903 * 14 13 11 16 16 C 1.53814 * 111.70118 * 306.38877 * 15 14 13 17 17 H 1.09000 * 109.94453 * 298.15928 * 16 15 14 18 18 N 1.46492 * 110.01787 * 176.95211 * 16 15 14 19 19 C 1.36943 * 120.00138 * 87.38190 * 18 16 15 20 20 H 1.08004 * 119.99768 * 359.97438 * 19 18 16 21 21 C 1.38808 * 120.00395 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99902 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00285 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46683 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46974 * 119.99701 * 23 21 19 26 26 H 1.48492 * 109.47202 * 240.00082 * 23 21 19 27 27 C 1.51621 * 107.01906 * 57.53674 * 16 15 14 28 28 H 1.08990 * 110.50641 * 55.19340 * 27 16 15 29 29 C 1.48659 * 125.77996 * 179.71616 * 9 7 6 30 30 N 1.30187 * 106.39102 * 359.62830 * 4 3 2 31 31 O 1.20916 * 111.60590 * 0.39612 * 30 4 3 32 32 H 1.08993 * 109.47140 * 90.00125 * 1 2 3 33 33 H 1.09003 * 109.46799 * 210.00794 * 1 2 3 34 34 H 1.09005 * 109.46817 * 330.00360 * 1 2 3 35 35 H 1.08002 * 128.00468 * 359.95534 * 3 2 1 36 36 H 1.09006 * 109.46793 * 244.99112 * 5 4 3 37 37 H 1.08997 * 109.47203 * 4.99609 * 5 4 3 38 38 H 1.08999 * 109.47521 * 299.99480 * 6 5 4 39 39 H 1.08995 * 109.47888 * 60.00117 * 6 5 4 40 40 H 1.08990 * 110.17079 * 295.89716 * 10 9 7 41 41 H 1.08998 * 110.16568 * 57.70045 * 10 9 7 42 42 H 1.09001 * 109.94129 * 300.62802 * 13 11 10 43 43 H 1.08994 * 109.93959 * 61.86312 * 13 11 10 44 44 H 1.09002 * 108.60175 * 296.14629 * 14 13 11 45 45 H 1.08999 * 109.29203 * 177.38121 * 14 13 11 46 46 H 1.09001 * 109.03611 * 185.81452 * 15 14 13 47 47 H 1.08996 * 108.97363 * 66.91645 * 15 14 13 48 48 H 0.97003 * 120.00175 * 267.38533 * 18 16 15 49 49 H 0.96994 * 119.99932 * 180.02562 * 22 21 19 50 50 H 1.08998 * 110.62837 * 274.12724 * 29 9 7 51 51 H 1.08997 * 110.62874 * 37.14646 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 -0.0054 5 6 4.9211 1.3000 -0.0125 6 6 5.7852 0.8461 1.1656 7 6 7.0852 1.6084 1.1582 8 8 7.2996 2.4332 0.2952 9 7 8.0095 1.3736 2.1105 10 6 7.8826 0.3989 3.2202 11 6 9.2079 0.4464 3.9699 12 1 9.9138 -0.2514 3.5195 13 6 9.1676 0.2546 5.4715 14 6 10.5840 0.3908 6.0019 15 6 11.2074 1.7290 5.6186 16 6 11.1345 1.9768 4.1022 17 1 11.6967 1.2077 3.5724 18 7 11.6764 3.3000 3.7838 19 6 13.0183 3.4543 3.5584 20 1 13.6772 2.6005 3.6159 21 6 13.5319 4.7082 3.2572 22 7 12.7290 5.7489 3.1876 23 14 15.3624 4.9188 2.9505 24 1 16.0414 3.6052 3.0867 25 1 15.5770 5.4465 1.5791 26 1 15.9239 5.8719 3.9411 27 6 9.6711 1.9094 3.7114 28 1 9.0845 2.6097 4.3058 29 6 9.3318 2.0437 2.2224 30 7 3.4763 -0.7565 0.0000 31 8 2.3095 -1.0737 0.0001 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3633 -0.8899 0.5140 34 1 -0.3633 0.8901 0.5138 35 1 2.0345 2.1271 -0.0007 36 1 5.4499 1.1080 -0.9462 37 1 4.7167 2.3669 0.0766 38 1 5.2565 1.0381 2.0993 39 1 5.9896 -0.2208 1.0766 40 1 7.0659 0.6871 3.8820 41 1 7.7108 -0.6017 2.8236 42 1 8.5461 1.0249 5.9281 43 1 8.7723 -0.7329 5.7096 44 1 11.1895 -0.4153 5.5875 45 1 10.5718 0.3022 7.0882 46 1 12.2518 1.7369 5.9303 47 1 10.6762 2.5283 6.1352 48 1 11.0847 4.0669 3.7326 49 1 13.0878 6.6250 2.9768 50 1 10.0743 1.5328 1.6093 51 1 9.2555 3.0935 1.9396 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992816409.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 08:01:58 Heat of formation + Delta-G solvation = 1.839342 kcal Electronic energy + Delta-G solvation = -30365.209074 eV Core-core repulsion = 26266.442054 eV Total energy + Delta-G solvation = -4098.767020 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 6.03 seconds Orbital eigenvalues (eV) -45.90081 -41.62405 -40.00653 -37.00900 -36.32946 -35.64726 -34.40712 -33.33789 -32.78305 -31.51248 -30.52671 -28.63020 -28.17896 -26.93671 -25.73638 -24.61553 -23.95624 -22.16102 -21.62641 -21.03966 -20.81054 -20.15147 -19.15868 -18.62744 -18.31010 -17.81293 -17.30255 -16.78020 -16.54090 -15.89112 -15.76980 -15.60342 -15.33501 -15.06264 -14.88515 -14.72127 -14.38235 -14.28258 -13.95575 -13.83716 -13.67603 -13.60995 -13.43701 -13.39667 -13.16756 -13.05201 -12.88401 -12.83367 -12.58698 -12.55965 -12.17357 -11.99069 -11.90463 -11.87360 -11.73451 -11.47023 -11.27272 -11.12302 -10.95970 -10.85041 -10.82066 -10.22264 -9.73628 -8.99708 -7.94442 -5.22351 0.54532 1.23007 1.44564 1.45653 1.54759 1.55130 1.86668 2.27543 2.54765 3.09800 3.28137 3.38615 3.45954 3.59725 3.67728 3.80596 3.99682 4.03286 4.09737 4.18244 4.20117 4.25090 4.38608 4.42691 4.47442 4.48980 4.52973 4.55928 4.61938 4.66329 4.70750 4.77004 4.77031 4.81721 4.85415 4.90243 4.90509 4.97576 5.09882 5.11784 5.14167 5.27599 5.29515 5.33779 5.38055 5.42006 5.51173 5.52396 5.69511 6.27728 6.48202 7.06310 7.33330 7.33408 8.10436 8.32298 9.29272 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016497 B = 0.002055 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.868104 B =13621.756030 C =14879.473533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.026 4.026 3 C -0.243 4.243 4 C 0.012 3.988 5 C -0.023 4.023 6 C -0.113 4.113 7 C 0.520 3.480 8 O -0.591 6.591 9 N -0.621 5.621 10 C 0.111 3.889 11 C -0.093 4.093 12 H 0.085 0.915 13 C -0.092 4.092 14 C -0.109 4.109 15 C -0.128 4.128 16 C 0.190 3.810 17 H 0.045 0.955 18 N -0.736 5.736 19 C -0.232 4.232 20 H 0.076 0.924 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.968 3.032 24 H -0.264 1.264 25 H -0.298 1.298 26 H -0.294 1.294 27 C -0.098 4.098 28 H 0.073 0.927 29 C 0.127 3.873 30 N -0.392 5.392 31 O 0.086 5.914 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.192 0.808 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.039 0.961 47 H 0.042 0.958 48 H 0.370 0.630 49 H 0.249 0.751 50 H 0.056 0.944 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.642 -17.452 0.914 31.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C -0.264 4.264 4 C -0.146 4.146 5 C -0.061 4.061 6 C -0.153 4.153 7 C 0.311 3.689 8 O -0.472 6.472 9 N -0.355 5.355 10 C -0.010 4.010 11 C -0.112 4.112 12 H 0.104 0.896 13 C -0.129 4.129 14 C -0.147 4.147 15 C -0.169 4.169 16 C 0.081 3.919 17 H 0.063 0.937 18 N -0.374 5.374 19 C -0.364 4.364 20 H 0.094 0.906 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.798 3.202 24 H -0.189 1.189 25 H -0.226 1.226 26 H -0.221 1.221 27 C -0.118 4.118 28 H 0.092 0.908 29 C 0.005 3.995 30 N -0.099 5.099 31 O 0.021 5.979 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.209 0.791 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.116 0.884 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.201 0.799 49 H 0.057 0.943 50 H 0.074 0.926 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -25.548 -18.120 0.389 31.324 hybrid contribution 1.193 2.082 -0.512 2.454 sum -24.355 -16.038 -0.124 29.161 Atomic orbital electron populations 1.20584 0.80888 1.06163 1.05440 1.25274 0.97958 0.85183 1.00496 1.22776 0.90404 1.02434 1.10776 1.23657 0.97952 0.90091 1.02856 1.19640 0.88602 0.99184 0.98700 1.21503 0.91262 1.01142 1.01358 1.20929 0.85676 0.82661 0.79656 1.90710 1.80360 1.37483 1.38664 1.49334 1.16760 1.40920 1.28468 1.22008 0.98606 0.92783 0.87576 1.21873 0.96485 0.95114 0.97726 0.89647 1.20907 0.96891 1.03463 0.91687 1.21146 0.96380 0.95919 1.01221 1.22135 0.99734 0.97823 0.97200 1.20206 0.90938 0.86887 0.93867 0.93653 1.42629 1.05297 1.05728 1.83785 1.19645 0.85805 0.93543 1.37412 0.90599 1.25532 1.01794 0.95790 1.04002 1.69830 1.35246 0.99327 1.57803 0.85133 0.80692 0.77776 0.76573 1.18862 1.22551 1.22131 1.22213 0.97246 0.98705 0.93634 0.90833 1.21706 0.83942 0.96523 0.97376 1.73826 0.97816 1.16920 1.21292 1.84778 1.11222 1.34178 1.67699 0.87994 0.88668 0.87149 0.79095 0.90646 0.88643 0.86630 0.87431 0.88938 0.88468 0.91503 0.88375 0.91795 0.90682 0.94215 0.93944 0.79852 0.94256 0.92600 0.93904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.45 71.24 0.74 0.52 16 2 C -0.03 -0.32 7.49 25.04 0.19 -0.13 16 3 C -0.24 -3.55 11.05 22.40 0.25 -3.30 16 4 C 0.01 0.25 6.59 43.57 0.29 0.54 16 5 C -0.02 -0.49 5.10 29.85 0.15 -0.34 16 6 C -0.11 -2.31 4.88 29.85 0.15 -2.16 16 7 C 0.52 15.53 7.86 87.66 0.69 16.22 16 8 O -0.59 -23.39 16.27 -3.03 -0.05 -23.44 16 9 N -0.62 -17.55 3.38 -812.42 -2.75 -20.30 16 10 C 0.11 2.08 6.23 85.83 0.54 2.62 16 11 C -0.09 -1.97 2.32 -10.62 -0.02 -2.00 16 12 H 0.09 1.83 7.97 -2.39 -0.02 1.82 16 13 C -0.09 -1.59 5.57 29.71 0.17 -1.42 16 14 C -0.11 -2.37 5.79 30.06 0.17 -2.20 16 15 C -0.13 -4.20 5.47 30.71 0.17 -4.03 16 16 C 0.19 7.19 2.55 44.82 0.11 7.31 16 17 H 0.05 1.77 7.94 -2.39 -0.02 1.75 16 18 N -0.74 -37.15 5.10 -323.80 -1.65 -38.80 16 19 C -0.23 -12.98 9.95 84.03 0.84 -12.14 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 22 N -0.97 -61.16 13.06 21.65 0.28 -60.88 16 23 Si 0.97 47.36 29.55 68.60 2.03 49.38 16 24 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 25 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 26 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 27 C -0.10 -3.09 1.98 -10.24 -0.02 -3.11 16 28 H 0.07 2.42 8.03 -2.39 -0.02 2.41 16 29 C 0.13 4.54 6.55 86.06 0.56 5.10 16 30 N -0.39 -8.72 12.05 -49.54 -0.60 -9.31 16 31 O 0.09 1.61 11.20 71.63 0.80 2.41 16 32 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.09 0.11 8.14 -2.39 -0.02 0.10 16 34 H 0.11 -0.02 8.14 -2.38 -0.02 -0.04 16 35 H 0.19 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.08 1.85 8.10 -2.38 -0.02 1.83 16 37 H 0.10 2.01 8.09 -2.39 -0.02 1.99 16 38 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.09 1.36 8.08 -2.39 -0.02 1.34 16 41 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.17 8.04 -2.39 -0.02 1.15 16 43 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 45 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.37 20.52 7.81 -92.71 -0.72 19.80 16 49 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 50 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 51 H 0.04 1.86 8.07 -2.39 -0.02 1.84 16 Total: -1.00 -78.02 411.29 3.69 -74.32 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.19 Total: 29.34 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 5.43 Total: -2.72 kcal Atomic # 7 Polarization: -124.58 SS G_CDS: -4.71 Total: -129.29 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.75 Total: -21.03 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.38 kcal Total: -78.02 3.69 -74.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992816409.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.160 kcal (2) G-P(sol) polarization free energy of solvation -78.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.03 seconds