Wall clock time and date at job start Wed Apr 1 2020 08:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35446 * 126.78229 * 2 1 4 4 C 1.41374 * 103.99089 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.80378 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47208 * 125.00107 * 5 4 3 7 7 C 1.50700 * 109.47208 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 6 5 10 10 C 1.47320 * 125.74283 * 359.41340 * 9 7 6 11 11 C 1.55136 * 106.87080 * 179.97438 * 10 9 7 12 12 H 1.09005 * 112.79462 * 215.55767 * 11 10 9 13 13 C 1.52925 * 107.01158 * 92.01429 * 11 10 9 14 14 C 1.52256 * 110.24203 * 191.99380 * 13 11 10 15 15 C 1.51829 * 110.43299 * 61.74359 * 14 13 11 16 16 C 1.49279 * 112.64831 * 306.92710 * 15 14 13 17 17 H 1.09002 * 107.22896 * 164.45859 * 16 15 14 18 18 N 1.46502 * 108.02497 * 280.41030 * 16 15 14 19 19 C 1.36941 * 119.99510 * 282.76530 * 18 16 15 20 20 H 1.07996 * 120.00316 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99596 * 179.97438 * 19 18 16 22 22 N 1.31613 * 120.00303 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99806 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47068 * 90.00171 * 23 21 19 25 25 H 1.48500 * 109.47247 * 210.00325 * 23 21 19 26 26 H 1.48500 * 109.47209 * 330.00301 * 23 21 19 27 27 C 1.49691 * 117.21150 * 42.75730 * 16 15 14 28 28 H 1.09008 * 109.18272 * 197.48478 * 27 16 15 29 29 C 1.47812 * 125.73667 * 179.72824 * 9 7 6 30 30 N 1.30179 * 106.39739 * 0.26147 * 4 3 2 31 31 O 1.20922 * 111.59712 * 359.53690 * 30 4 3 32 32 H 1.08994 * 109.47399 * 89.99886 * 1 2 3 33 33 H 1.09001 * 109.47299 * 210.00364 * 1 2 3 34 34 H 1.09005 * 109.46928 * 329.99819 * 1 2 3 35 35 H 1.08003 * 128.00498 * 359.94515 * 3 2 1 36 36 H 1.09000 * 109.47500 * 5.00110 * 5 4 3 37 37 H 1.08998 * 109.47585 * 245.00105 * 5 4 3 38 38 H 1.09009 * 109.46730 * 59.99906 * 6 5 4 39 39 H 1.08998 * 109.46846 * 300.00451 * 6 5 4 40 40 H 1.09006 * 109.97662 * 299.39758 * 10 9 7 41 41 H 1.09002 * 109.97884 * 60.68611 * 10 9 7 42 42 H 1.09004 * 109.33971 * 312.22789 * 13 11 10 43 43 H 1.08994 * 109.34700 * 71.90939 * 13 11 10 44 44 H 1.08997 * 109.30765 * 182.04079 * 14 13 11 45 45 H 1.09003 * 109.30439 * 301.45193 * 14 13 11 46 46 H 1.09004 * 108.78606 * 67.73641 * 15 14 13 47 47 H 1.08997 * 108.78778 * 185.93990 * 15 14 13 48 48 H 0.96994 * 120.00311 * 102.75944 * 18 16 15 49 49 H 0.97001 * 120.00337 * 179.97438 * 22 21 19 50 50 H 1.09003 * 110.51579 * 322.97117 * 29 9 7 51 51 H 1.09001 * 110.51664 * 85.68678 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3179 1.0848 0.0000 4 6 3.6213 0.5372 0.0006 5 6 4.9210 1.2999 0.0003 6 6 5.7795 0.8452 1.1824 7 6 7.0790 1.6083 1.1825 8 8 7.2972 2.4342 0.3216 9 7 8.0011 1.3686 2.1358 10 6 7.8666 0.4023 3.2396 11 6 9.1748 0.4821 4.0697 12 1 9.4817 -0.4850 4.4683 13 6 8.9392 1.5086 5.1785 14 6 10.2560 1.8657 5.8542 15 6 11.2106 2.4954 4.8555 16 6 11.3996 1.6579 3.6343 17 1 11.8567 2.2926 2.8751 18 7 12.3504 0.5916 3.9586 19 6 13.6905 0.8657 4.0236 20 1 14.0464 1.8680 3.8363 21 6 14.5914 -0.1445 4.3314 22 7 14.1577 -1.3659 4.5602 23 14 16.4194 0.2296 4.4209 24 1 16.7756 0.6292 5.8060 25 1 17.1915 -0.9806 4.0407 26 1 16.7442 1.3376 3.4870 27 6 10.1783 1.0280 3.0405 28 1 10.4802 0.2206 2.3732 29 6 9.3148 2.0358 2.2533 30 7 3.4763 -0.7565 -0.0048 31 8 2.3094 -1.0737 0.0006 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 2.0345 2.1270 -0.0008 36 1 4.7163 2.3668 0.0892 37 1 5.4544 1.1086 -0.9308 38 1 5.9842 -0.2218 1.0936 39 1 5.2461 1.0364 2.1136 40 1 7.0120 0.6656 3.8630 41 1 7.7408 -0.6041 2.8403 42 1 8.4978 2.4083 4.7497 43 1 8.2578 1.0901 5.9192 44 1 10.0660 2.5696 6.6645 45 1 10.7075 0.9621 6.2640 46 1 10.8171 3.4677 4.5588 47 1 12.1767 2.6427 5.3381 48 1 12.0307 -0.3085 4.1273 49 1 14.7872 -2.0719 4.7749 50 1 9.7411 2.2166 1.2665 51 1 9.2206 2.9702 2.8067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992816416.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 08:04:37 Heat of formation + Delta-G solvation = 24.299080 kcal Electronic energy + Delta-G solvation = -30484.900744 eV Core-core repulsion = 26387.107652 eV Total energy + Delta-G solvation = -4097.793093 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 39.71 seconds Orbital eigenvalues (eV) -45.22532 -40.59474 -38.84113 -35.82192 -35.48639 -33.90519 -33.56818 -31.96881 -31.53403 -30.58433 -29.23375 -28.21051 -26.77857 -25.90936 -24.20836 -23.34622 -22.74123 -22.05644 -21.07903 -20.12154 -19.16568 -18.07111 -17.85575 -17.56670 -17.18175 -16.82604 -16.26204 -15.66758 -15.15954 -14.84236 -14.62597 -14.33468 -14.10305 -14.02443 -13.74658 -13.68047 -13.59040 -13.36759 -13.15279 -12.92704 -12.80109 -12.65556 -12.48030 -12.30395 -11.87649 -11.79764 -11.69713 -11.33878 -11.17595 -11.17364 -10.91904 -10.84394 -10.69657 -10.34862 -10.16698 -10.06577 -9.90606 -9.79603 -9.65388 -9.58822 -9.51828 -8.85201 -8.59666 -6.93558 -5.75951 -3.03806 1.13744 1.89998 2.60224 2.77288 2.96028 3.43595 3.49458 3.50566 3.85302 4.06084 4.42724 4.58219 4.59388 4.61509 4.72323 4.76618 4.88267 4.89435 4.90944 4.95025 5.09843 5.22621 5.27597 5.28849 5.38227 5.40972 5.45723 5.54360 5.59052 5.63727 5.67330 5.70380 5.79590 5.81656 5.84926 5.87134 5.95445 6.03397 6.12761 6.21513 6.33449 6.38567 6.42444 6.51131 6.80286 6.82241 7.00040 7.17967 7.52961 7.71019 7.98221 8.12532 8.42790 9.54349 10.11614 10.47112 11.46760 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022385 B = 0.001879 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.509599 B =14901.704874 C =15052.385020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.035 4.035 3 C -0.232 4.232 4 C 0.022 3.978 5 C -0.025 4.025 6 C -0.131 4.131 7 C 0.529 3.471 8 O -0.547 6.547 9 N -0.615 5.615 10 C 0.100 3.900 11 C -0.089 4.089 12 H 0.100 0.900 13 C -0.109 4.109 14 C -0.110 4.110 15 C -0.125 4.125 16 C 0.188 3.812 17 H 0.039 0.961 18 N -0.726 5.726 19 C -0.235 4.235 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.904 3.096 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.283 1.283 27 C -0.089 4.089 28 H 0.084 0.916 29 C 0.114 3.886 30 N -0.362 5.362 31 O 0.098 5.902 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.171 0.829 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.049 0.951 45 H 0.067 0.933 46 H 0.037 0.963 47 H 0.072 0.928 48 H 0.382 0.618 49 H 0.254 0.746 50 H 0.078 0.922 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.428 4.680 -4.682 29.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 C -0.253 4.253 4 C -0.136 4.136 5 C -0.064 4.064 6 C -0.171 4.171 7 C 0.317 3.683 8 O -0.425 6.425 9 N -0.349 5.349 10 C -0.023 4.023 11 C -0.107 4.107 12 H 0.118 0.882 13 C -0.146 4.146 14 C -0.147 4.147 15 C -0.165 4.165 16 C 0.078 3.922 17 H 0.057 0.943 18 N -0.368 5.368 19 C -0.366 4.366 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.735 3.265 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.109 4.109 28 H 0.103 0.897 29 C -0.009 4.009 30 N -0.066 5.066 31 O 0.032 5.968 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.189 0.811 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.055 0.945 47 H 0.091 0.909 48 H 0.216 0.784 49 H 0.064 0.936 50 H 0.096 0.904 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -27.335 4.173 -5.237 28.143 hybrid contribution 0.660 0.566 0.265 0.908 sum -26.675 4.739 -4.973 27.546 Atomic orbital electron populations 1.20337 0.84037 1.04684 1.04120 1.24528 0.96427 0.86284 1.02610 1.22451 0.91315 1.01056 1.10517 1.23607 0.97401 0.90064 1.02555 1.19735 0.88346 0.98871 0.99404 1.21578 0.93573 1.01708 1.00257 1.20157 0.84741 0.83051 0.80301 1.90704 1.79188 1.35513 1.37062 1.48660 1.17817 1.40751 1.27642 1.22458 0.99118 0.92517 0.88163 1.22126 0.92894 1.00490 0.95225 0.88167 1.21442 0.98031 0.98186 0.96940 1.20997 0.94865 1.01182 0.97702 1.21202 0.99911 0.97555 0.97860 1.18609 0.88438 0.90939 0.94182 0.94289 1.42552 1.02404 1.07437 1.84426 1.19216 0.83118 0.94750 1.39536 0.91261 1.24699 0.97802 0.95607 1.02826 1.69650 1.33359 1.00451 1.54721 0.86236 0.85724 0.76906 0.77612 1.21838 1.21875 1.20834 1.21539 0.94544 0.98150 0.96638 0.89745 1.22309 0.81726 0.95954 1.00876 1.73862 0.96790 1.16347 1.19631 1.84836 1.11329 1.33170 1.67489 0.89405 0.89783 0.89038 0.81146 0.88730 0.88956 0.88360 0.88890 0.91354 0.91421 0.92436 0.92463 0.93244 0.91400 0.94456 0.90920 0.78423 0.93615 0.90400 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.21 10.45 36.00 0.38 0.16 16 2 C -0.03 -0.25 7.49 -35.31 -0.26 -0.51 16 3 C -0.23 -1.79 11.05 -39.39 -0.44 -2.22 16 4 C 0.02 0.23 6.59 -82.10 -0.54 -0.31 16 5 C -0.03 -0.25 5.10 -27.88 -0.14 -0.40 16 6 C -0.13 -1.36 4.87 -27.88 -0.14 -1.49 16 7 C 0.53 7.20 7.85 -10.98 -0.09 7.11 16 8 O -0.55 -9.21 16.26 5.55 0.09 -9.12 16 9 N -0.61 -8.18 3.34 -169.82 -0.57 -8.75 16 10 C 0.10 1.14 5.90 -2.46 -0.01 1.13 16 11 C -0.09 -1.18 3.51 -89.13 -0.31 -1.50 16 12 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 13 C -0.11 -1.37 4.71 -27.15 -0.13 -1.50 16 14 C -0.11 -1.66 5.89 -27.71 -0.16 -1.82 16 15 C -0.13 -2.15 5.33 -29.16 -0.16 -2.31 16 16 C 0.19 3.52 2.24 -71.40 -0.16 3.36 16 17 H 0.04 0.78 7.96 -51.93 -0.41 0.37 16 18 N -0.73 -17.19 4.99 -56.84 -0.28 -17.48 16 19 C -0.23 -6.32 9.33 -15.06 -0.14 -6.46 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 23 Si 0.90 22.24 29.55 -169.99 -5.02 17.21 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C -0.09 -1.41 2.23 -91.17 -0.20 -1.61 16 28 H 0.08 1.50 8.07 -51.92 -0.42 1.08 16 29 C 0.11 1.67 5.84 -2.64 -0.02 1.65 16 30 N -0.36 -4.18 12.06 33.42 0.40 -3.78 16 31 O 0.10 0.98 11.20 17.16 0.19 1.17 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 35 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 37 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 38 H 0.10 1.03 8.14 -51.92 -0.42 0.60 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.66 7.76 -51.93 -0.40 0.25 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.72 7.00 -51.93 -0.36 0.35 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 1.43 7.53 -51.93 -0.39 1.04 16 48 H 0.38 9.64 7.73 -40.82 -0.32 9.32 16 49 H 0.25 7.34 8.31 -40.82 -0.34 7.01 16 50 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 51 H 0.07 0.99 7.42 -51.93 -0.39 0.60 16 LS Contribution 407.12 15.07 6.14 6.14 Total: -1.00 -32.61 407.12 -9.52 -42.12 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -8.57 Total: 6.58 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -2.62 Total: -7.19 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.28 Total: -56.91 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.28 Total: -7.95 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.61 -9.52 -42.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992816416.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.422 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 39.72 seconds