Wall clock time and date at job start Wed Apr 1 2020 08:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35446 * 126.78229 * 2 1 4 4 C 1.41374 * 103.99089 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.80378 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47208 * 125.00107 * 5 4 3 7 7 C 1.50700 * 109.47208 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 6 5 10 10 C 1.47320 * 125.74283 * 359.41340 * 9 7 6 11 11 C 1.55136 * 106.87080 * 179.97438 * 10 9 7 12 12 H 1.09005 * 112.79462 * 215.55767 * 11 10 9 13 13 C 1.52925 * 107.01158 * 92.01429 * 11 10 9 14 14 C 1.52256 * 110.24203 * 191.99380 * 13 11 10 15 15 C 1.51829 * 110.43299 * 61.74359 * 14 13 11 16 16 C 1.49279 * 112.64831 * 306.92710 * 15 14 13 17 17 H 1.09002 * 107.22896 * 164.45859 * 16 15 14 18 18 N 1.46502 * 108.02497 * 280.41030 * 16 15 14 19 19 C 1.36941 * 119.99510 * 282.76530 * 18 16 15 20 20 H 1.07996 * 120.00316 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99596 * 179.97438 * 19 18 16 22 22 N 1.31613 * 120.00303 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99806 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47068 * 90.00171 * 23 21 19 25 25 H 1.48500 * 109.47247 * 210.00325 * 23 21 19 26 26 H 1.48500 * 109.47209 * 330.00301 * 23 21 19 27 27 C 1.49691 * 117.21150 * 42.75730 * 16 15 14 28 28 H 1.09008 * 109.18272 * 197.48478 * 27 16 15 29 29 C 1.47812 * 125.73667 * 179.72824 * 9 7 6 30 30 N 1.30179 * 106.39739 * 0.26147 * 4 3 2 31 31 O 1.20922 * 111.59712 * 359.53690 * 30 4 3 32 32 H 1.08994 * 109.47399 * 89.99886 * 1 2 3 33 33 H 1.09001 * 109.47299 * 210.00364 * 1 2 3 34 34 H 1.09005 * 109.46928 * 329.99819 * 1 2 3 35 35 H 1.08003 * 128.00498 * 359.94515 * 3 2 1 36 36 H 1.09000 * 109.47500 * 5.00110 * 5 4 3 37 37 H 1.08998 * 109.47585 * 245.00105 * 5 4 3 38 38 H 1.09009 * 109.46730 * 59.99906 * 6 5 4 39 39 H 1.08998 * 109.46846 * 300.00451 * 6 5 4 40 40 H 1.09006 * 109.97662 * 299.39758 * 10 9 7 41 41 H 1.09002 * 109.97884 * 60.68611 * 10 9 7 42 42 H 1.09004 * 109.33971 * 312.22789 * 13 11 10 43 43 H 1.08994 * 109.34700 * 71.90939 * 13 11 10 44 44 H 1.08997 * 109.30765 * 182.04079 * 14 13 11 45 45 H 1.09003 * 109.30439 * 301.45193 * 14 13 11 46 46 H 1.09004 * 108.78606 * 67.73641 * 15 14 13 47 47 H 1.08997 * 108.78778 * 185.93990 * 15 14 13 48 48 H 0.96994 * 120.00311 * 102.75944 * 18 16 15 49 49 H 0.97001 * 120.00337 * 179.97438 * 22 21 19 50 50 H 1.09003 * 110.51579 * 322.97117 * 29 9 7 51 51 H 1.09001 * 110.51664 * 85.68678 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3179 1.0848 0.0000 4 6 3.6213 0.5372 0.0006 5 6 4.9210 1.2999 0.0003 6 6 5.7795 0.8452 1.1824 7 6 7.0790 1.6083 1.1825 8 8 7.2972 2.4342 0.3216 9 7 8.0011 1.3686 2.1358 10 6 7.8666 0.4023 3.2396 11 6 9.1748 0.4821 4.0697 12 1 9.4817 -0.4850 4.4683 13 6 8.9392 1.5086 5.1785 14 6 10.2560 1.8657 5.8542 15 6 11.2106 2.4954 4.8555 16 6 11.3996 1.6579 3.6343 17 1 11.8567 2.2926 2.8751 18 7 12.3504 0.5916 3.9586 19 6 13.6905 0.8657 4.0236 20 1 14.0464 1.8680 3.8363 21 6 14.5914 -0.1445 4.3314 22 7 14.1577 -1.3659 4.5602 23 14 16.4194 0.2296 4.4209 24 1 16.7756 0.6292 5.8060 25 1 17.1915 -0.9806 4.0407 26 1 16.7442 1.3376 3.4870 27 6 10.1783 1.0280 3.0405 28 1 10.4802 0.2206 2.3732 29 6 9.3148 2.0358 2.2533 30 7 3.4763 -0.7565 -0.0048 31 8 2.3094 -1.0737 0.0006 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 2.0345 2.1270 -0.0008 36 1 4.7163 2.3668 0.0892 37 1 5.4544 1.1086 -0.9308 38 1 5.9842 -0.2218 1.0936 39 1 5.2461 1.0364 2.1136 40 1 7.0120 0.6656 3.8630 41 1 7.7408 -0.6041 2.8403 42 1 8.4978 2.4083 4.7497 43 1 8.2578 1.0901 5.9192 44 1 10.0660 2.5696 6.6645 45 1 10.7075 0.9621 6.2640 46 1 10.8171 3.4677 4.5588 47 1 12.1767 2.6427 5.3381 48 1 12.0307 -0.3085 4.1273 49 1 14.7872 -2.0719 4.7749 50 1 9.7411 2.2166 1.2665 51 1 9.2206 2.9702 2.8067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992816416.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 08:04:15 Heat of formation + Delta-G solvation = 5.103027 kcal Electronic energy + Delta-G solvation = -30485.733148 eV Core-core repulsion = 26387.107652 eV Total energy + Delta-G solvation = -4098.625496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 5.23 seconds Orbital eigenvalues (eV) -45.89390 -41.77007 -40.03656 -37.17452 -36.31274 -35.19914 -34.39855 -33.28325 -32.80207 -31.70159 -30.80680 -28.62988 -28.11888 -26.90439 -25.78892 -24.26378 -23.90143 -23.30596 -22.36292 -20.81581 -20.16939 -19.30468 -19.16646 -18.60458 -18.33425 -17.85646 -17.40389 -16.79280 -16.45229 -16.22413 -15.55521 -15.51829 -15.41525 -15.14453 -15.05423 -14.64186 -14.35270 -14.24089 -14.09343 -13.93205 -13.81265 -13.54691 -13.39044 -13.22413 -13.10300 -13.03432 -12.83720 -12.68909 -12.63110 -12.53613 -12.35692 -12.17875 -11.97124 -11.85702 -11.78725 -11.29327 -11.22226 -11.10413 -10.90665 -10.86809 -10.69916 -10.21982 -9.69795 -8.95385 -7.91979 -5.18223 0.55526 1.24648 1.46558 1.47123 1.54275 1.55305 1.91170 2.28859 2.56650 3.12842 3.35204 3.41914 3.48253 3.52090 3.70478 3.78270 4.00278 4.05180 4.08706 4.17813 4.21133 4.23213 4.36297 4.39852 4.41623 4.47384 4.55514 4.57936 4.63054 4.66051 4.76993 4.77565 4.80941 4.85684 4.86364 4.91530 4.92340 4.98576 5.07762 5.12175 5.14044 5.19301 5.27854 5.30332 5.41459 5.50910 5.52212 5.67331 5.73311 6.30850 6.47608 7.05492 7.34770 7.37458 8.14121 8.38218 9.31378 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022385 B = 0.001879 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.509599 B =14901.704874 C =15052.385020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.028 4.028 3 C -0.240 4.240 4 C 0.011 3.989 5 C -0.021 4.021 6 C -0.118 4.118 7 C 0.527 3.473 8 O -0.584 6.584 9 N -0.615 5.615 10 C 0.106 3.894 11 C -0.087 4.087 12 H 0.091 0.909 13 C -0.100 4.100 14 C -0.106 4.106 15 C -0.121 4.121 16 C 0.190 3.810 17 H 0.022 0.978 18 N -0.734 5.734 19 C -0.231 4.231 20 H 0.071 0.929 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.965 3.035 24 H -0.288 1.288 25 H -0.298 1.298 26 H -0.274 1.274 27 C -0.084 4.084 28 H 0.058 0.942 29 C 0.121 3.879 30 N -0.396 5.396 31 O 0.083 5.917 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.196 0.804 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.039 0.961 46 H 0.061 0.939 47 H 0.041 0.959 48 H 0.372 0.628 49 H 0.249 0.751 50 H 0.059 0.941 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.501 5.898 -3.929 32.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.091 4.091 3 C -0.261 4.261 4 C -0.147 4.147 5 C -0.059 4.059 6 C -0.158 4.158 7 C 0.317 3.683 8 O -0.465 6.465 9 N -0.348 5.348 10 C -0.016 4.016 11 C -0.105 4.105 12 H 0.109 0.891 13 C -0.137 4.137 14 C -0.143 4.143 15 C -0.160 4.160 16 C 0.082 3.918 17 H 0.040 0.960 18 N -0.375 5.375 19 C -0.364 4.364 20 H 0.089 0.911 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.795 3.205 24 H -0.215 1.215 25 H -0.225 1.225 26 H -0.199 1.199 27 C -0.104 4.104 28 H 0.077 0.923 29 C -0.002 4.002 30 N -0.103 5.103 31 O 0.018 5.982 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.130 0.870 35 H 0.213 0.787 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.135 0.865 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.204 0.796 49 H 0.057 0.943 50 H 0.077 0.923 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -30.444 5.419 -4.479 31.245 hybrid contribution 1.560 0.243 -0.024 1.579 sum -28.883 5.662 -4.503 29.776 Atomic orbital electron populations 1.20579 0.80957 1.06139 1.05420 1.25304 0.97986 0.85286 1.00574 1.22782 0.90219 1.02439 1.10647 1.23736 0.98183 0.90002 1.02737 1.19654 0.88379 0.99379 0.98497 1.21527 0.91851 1.00945 1.01518 1.20715 0.85481 0.82627 0.79442 1.90688 1.80046 1.37317 1.38419 1.48709 1.17044 1.40841 1.28214 1.22544 0.98820 0.92671 0.87584 1.22091 0.92993 1.00263 0.95202 0.89080 1.21410 0.96943 0.98408 0.96944 1.20956 0.95465 1.00190 0.97737 1.21054 0.99275 0.98543 0.97172 1.18793 0.88694 0.89725 0.94582 0.96017 1.42709 1.02308 1.08156 1.84338 1.19547 0.84669 0.94592 1.37543 0.91137 1.25422 1.01690 0.95663 1.03904 1.69795 1.34232 1.01179 1.56673 0.85258 0.81098 0.76521 0.77626 1.21534 1.22473 1.19871 1.21295 0.94275 0.97637 0.97178 0.92335 1.22098 0.82368 0.95987 0.99711 1.73855 0.97831 1.17259 1.21366 1.84788 1.11258 1.34334 1.67782 0.88009 0.88884 0.86993 0.78730 0.87941 0.90716 0.88320 0.86501 0.88067 0.90482 0.91216 0.89709 0.91212 0.94202 0.92012 0.94004 0.79563 0.94250 0.92269 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.20 10.45 71.23 0.74 0.55 16 2 C -0.03 -0.34 7.49 25.04 0.19 -0.15 16 3 C -0.24 -3.18 11.05 22.40 0.25 -2.93 16 4 C 0.01 0.22 6.59 43.58 0.29 0.51 16 5 C -0.02 -0.40 5.10 29.85 0.15 -0.24 16 6 C -0.12 -2.24 4.87 29.85 0.15 -2.09 16 7 C 0.53 13.67 7.85 87.66 0.69 14.36 16 8 O -0.58 -19.51 16.26 -3.04 -0.05 -19.56 16 9 N -0.62 -15.35 3.34 -809.59 -2.70 -18.05 16 10 C 0.11 2.11 5.90 86.95 0.51 2.62 16 11 C -0.09 -2.18 3.51 -9.83 -0.03 -2.21 16 12 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 13 C -0.10 -2.22 4.71 30.32 0.14 -2.07 16 14 C -0.11 -3.03 5.89 29.96 0.18 -2.85 16 15 C -0.12 -4.09 5.33 29.02 0.15 -3.93 16 16 C 0.19 7.25 2.24 42.74 0.10 7.35 16 17 H 0.02 0.90 7.96 -2.39 -0.02 0.88 16 18 N -0.73 -35.91 4.99 -333.75 -1.67 -37.57 16 19 C -0.23 -12.74 9.33 84.03 0.78 -11.96 16 20 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 21 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 22 N -0.97 -58.89 13.06 21.65 0.28 -58.61 16 23 Si 0.96 46.58 29.55 68.60 2.03 48.61 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 26 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 27 C -0.08 -2.67 2.23 -11.15 -0.02 -2.69 16 28 H 0.06 2.16 8.07 -2.38 -0.02 2.14 16 29 C 0.12 3.49 5.84 86.57 0.51 3.99 16 30 N -0.40 -8.91 12.06 -49.57 -0.60 -9.51 16 31 O 0.08 1.58 11.20 71.59 0.80 2.38 16 32 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.11 -0.12 8.14 -2.38 -0.02 -0.14 16 35 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.10 1.77 8.09 -2.39 -0.02 1.75 16 37 H 0.07 1.68 8.10 -2.39 -0.02 1.66 16 38 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.10 1.45 7.76 -2.38 -0.02 1.43 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.44 7.00 -2.38 -0.02 1.42 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 47 H 0.04 1.66 7.53 -2.39 -0.02 1.65 16 48 H 0.37 19.53 7.73 -92.71 -0.72 18.81 16 49 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 50 H 0.06 1.92 8.05 -2.39 -0.02 1.90 16 51 H 0.08 2.14 7.42 -2.39 -0.02 2.12 16 Total: -1.00 -73.47 407.12 3.53 -69.93 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.21 Total: 27.97 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 5.23 Total: -5.58 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -4.68 Total: -123.74 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.75 Total: -17.18 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -73.47 3.53 -69.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992816416.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.036 kcal (2) G-P(sol) polarization free energy of solvation -73.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.23 seconds