Wall clock time and date at job start Wed Apr 1 2020 04:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38353 * 119.40671 * 2 1 4 4 C 1.38336 * 119.45737 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.82470 * 180.02562 * 4 3 2 6 6 C 1.39984 * 118.34853 * 0.27042 * 4 3 2 7 7 C 1.47526 * 120.59731 * 179.70741 * 6 4 3 8 8 O 1.21587 * 120.00271 * 89.99401 * 7 6 4 9 9 N 1.34779 * 120.00126 * 270.00265 * 7 6 4 10 10 C 1.46495 * 120.00357 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47122 * 34.99467 * 10 9 7 12 12 C 1.52999 * 109.47214 * 274.99575 * 10 9 7 13 13 C 1.53001 * 109.47279 * 154.99439 * 10 9 7 14 14 C 1.53039 * 109.45908 * 300.02984 * 13 10 9 15 15 C 1.53194 * 109.30733 * 178.59929 * 14 13 10 16 16 N 1.46923 * 108.76828 * 54.66036 * 15 14 13 17 17 C 1.36935 * 120.63751 * 126.40385 * 16 15 14 18 18 H 1.07997 * 119.99559 * 331.81878 * 17 16 15 19 19 C 1.38813 * 120.00236 * 151.82025 * 17 16 15 20 20 N 1.31617 * 120.00034 * 343.07970 * 19 17 16 21 21 Si 1.86795 * 120.00010 * 163.07750 * 19 17 16 22 22 H 1.48503 * 109.46865 * 59.99941 * 21 19 17 23 23 H 1.48503 * 109.47366 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47426 * 300.00208 * 21 19 17 25 25 C 1.46934 * 118.73459 * 306.37855 * 16 15 14 26 26 C 1.53040 * 109.45877 * 179.97438 * 13 10 9 27 27 C 1.40282 * 118.80392 * 359.46336 * 6 4 3 28 28 O 1.35429 * 119.79836 * 180.24658 * 27 6 4 29 29 N 1.31875 * 119.40729 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46967 * 90.00155 * 1 2 3 31 31 H 1.08994 * 109.47238 * 210.00406 * 1 2 3 32 32 H 1.09001 * 109.46973 * 330.00443 * 1 2 3 33 33 H 1.08006 * 120.27401 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.47691 * 89.99722 * 5 4 3 35 35 H 1.09008 * 109.47536 * 329.99773 * 5 4 3 36 36 H 1.08997 * 109.47220 * 209.99949 * 5 4 3 37 37 H 0.97004 * 119.99457 * 359.97438 * 9 7 6 38 38 H 1.09006 * 109.46956 * 59.99710 * 12 10 9 39 39 H 1.08999 * 109.47113 * 179.97438 * 12 10 9 40 40 H 1.09000 * 109.46988 * 299.99974 * 12 10 9 41 41 H 1.09002 * 109.45876 * 60.00234 * 13 10 9 42 42 H 1.08995 * 109.49985 * 298.56165 * 14 13 10 43 43 H 1.08994 * 109.49994 * 58.66037 * 14 13 10 44 44 H 1.08996 * 109.60390 * 294.86442 * 15 14 13 45 45 H 1.09013 * 109.69923 * 174.50281 * 15 14 13 46 46 H 0.97000 * 120.00361 * 179.97438 * 20 19 17 47 47 H 1.09005 * 109.58396 * 293.82345 * 25 16 15 48 48 H 1.08999 * 109.70388 * 173.46981 * 25 16 15 49 49 H 1.09001 * 109.50183 * 301.33883 * 26 13 10 50 50 H 1.09001 * 109.49623 * 61.40548 * 26 13 10 51 51 H 0.96694 * 114.00076 * 270.30442 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0005 5 6 4.3408 2.5013 0.0011 6 6 4.2355 -0.0249 -0.0047 7 6 5.7097 -0.0814 -0.0109 8 8 6.3215 -0.1068 1.0395 9 7 6.3783 -0.1048 -1.1809 10 6 7.8422 -0.1604 -1.1871 11 1 8.1864 -0.7647 -0.3478 12 6 8.4069 1.2560 -1.0612 13 6 8.3233 -0.7866 -2.4976 14 6 7.7577 -2.2030 -2.6236 15 6 8.2128 -2.8137 -3.9528 16 7 9.6782 -2.7404 -4.0296 17 6 10.4208 -3.8630 -4.2814 18 1 10.0495 -4.8334 -3.9867 19 6 11.6509 -3.7538 -4.9153 20 7 11.9602 -2.6526 -5.5665 21 14 12.8673 -5.1696 -4.8441 22 1 12.2560 -6.3784 -5.4528 23 1 14.0957 -4.8052 -5.5949 24 1 13.2170 -5.4512 -3.4286 25 6 10.3317 -1.4394 -3.8317 26 6 9.8526 -0.8439 -2.5040 27 6 3.4757 -1.2041 0.0012 28 8 4.0991 -2.4064 0.0013 29 7 2.1546 -1.1488 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6411 2.1376 -0.0004 34 1 4.5263 2.8134 1.0289 35 1 3.7623 3.2691 -0.5128 36 1 5.2916 2.3583 -0.5123 37 1 5.8901 -0.0848 -2.0189 38 1 8.0641 1.7021 -0.1275 39 1 9.4961 1.2145 -1.0653 40 1 8.0627 1.8603 -1.9005 41 1 7.9790 -0.1821 -3.3368 42 1 8.1217 -2.8149 -1.7984 43 1 6.6688 -2.1639 -2.5953 44 1 7.7751 -2.2557 -4.7805 45 1 7.8958 -3.8554 -4.0063 46 1 12.8199 -2.5761 -6.0092 47 1 10.0667 -0.7692 -4.6495 48 1 11.4132 -1.5719 -3.8036 49 1 10.2550 0.1627 -2.3905 50 1 10.1967 -1.4683 -1.6794 51 1 4.2805 -2.7554 -0.8820 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997247629.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:16 Heat of formation + Delta-G solvation = -35.505674 kcal Electronic energy + Delta-G solvation = -31370.044412 eV Core-core repulsion = 27269.657990 eV Total energy + Delta-G solvation = -4100.386422 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.25598 -39.60287 -37.91928 -37.63376 -35.35843 -34.57440 -32.87564 -32.13643 -31.33875 -29.77447 -29.33795 -28.43271 -27.86696 -25.44683 -24.02162 -23.04686 -22.14191 -21.95881 -20.77600 -20.48216 -19.22694 -18.71482 -17.88477 -17.49122 -16.73186 -16.31143 -15.79745 -15.17612 -14.80129 -14.74337 -14.39418 -14.13401 -13.90764 -13.71421 -13.62345 -13.52670 -13.37299 -13.36923 -13.12515 -12.93304 -12.79910 -12.40086 -12.37548 -12.30727 -12.13509 -11.93068 -11.84792 -11.39948 -11.16275 -10.99842 -10.70989 -10.46530 -10.41892 -10.23084 -10.18740 -9.94266 -9.89199 -9.71201 -9.56338 -9.44653 -9.13355 -9.02834 -8.46907 -6.67298 -5.79484 -3.21779 0.44389 0.73893 2.43726 2.92701 3.15159 3.28390 3.38460 3.44118 3.46016 4.10451 4.13913 4.48693 4.49853 4.62089 4.80401 4.88304 4.95673 5.01520 5.14149 5.15895 5.17972 5.22009 5.30330 5.37241 5.43845 5.49484 5.57979 5.63104 5.63837 5.68098 5.76409 5.82007 5.92103 6.04668 6.08752 6.14045 6.22543 6.30305 6.40974 6.47840 6.59120 6.69178 6.74861 6.82237 6.96941 7.14707 7.34432 7.42219 7.53264 7.64696 7.79142 8.09684 8.45013 9.21285 9.84709 10.41266 11.28988 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.002412 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.812774 B =11606.348386 C =12394.737638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.168 3.832 3 C -0.188 4.188 4 C 0.011 3.989 5 C -0.124 4.124 6 C -0.202 4.202 7 C 0.575 3.425 8 O -0.525 6.525 9 N -0.712 5.712 10 C 0.143 3.857 11 H 0.088 0.912 12 C -0.163 4.163 13 C -0.083 4.083 14 C -0.125 4.125 15 C 0.146 3.854 16 N -0.592 5.592 17 C -0.252 4.252 18 H 0.064 0.936 19 C 0.002 3.998 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.172 3.828 26 C -0.134 4.134 27 C 0.357 3.643 28 O -0.472 6.472 29 N -0.506 5.506 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.398 0.602 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.045 0.955 44 H 0.015 0.985 45 H 0.052 0.948 46 H 0.254 0.746 47 H 0.017 0.983 48 H 0.087 0.913 49 H 0.054 0.946 50 H 0.057 0.943 51 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.640 12.393 8.590 25.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.030 3.970 3 C -0.208 4.208 4 C 0.003 3.997 5 C -0.180 4.180 6 C -0.209 4.209 7 C 0.359 3.641 8 O -0.401 6.401 9 N -0.363 5.363 10 C 0.040 3.960 11 H 0.106 0.894 12 C -0.221 4.221 13 C -0.102 4.102 14 C -0.164 4.164 15 C 0.019 3.981 16 N -0.314 5.314 17 C -0.382 4.382 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.046 3.954 26 C -0.173 4.173 27 C 0.178 3.822 28 O -0.280 6.280 29 N -0.226 5.226 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.162 0.838 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.233 0.767 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.032 0.968 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.035 0.965 48 H 0.105 0.895 49 H 0.072 0.928 50 H 0.075 0.925 51 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -20.437 11.628 9.838 25.488 hybrid contribution 0.936 -0.125 -0.877 1.289 sum -19.501 11.503 8.960 24.350 Atomic orbital electron populations 1.20806 0.88119 1.03945 1.03571 1.21189 0.97011 0.87063 0.91752 1.21771 0.93608 0.99626 1.05799 1.20257 0.93679 0.94161 0.91611 1.20944 1.00197 0.93079 1.03821 1.20903 0.95178 0.94107 1.10718 1.17741 0.85825 0.76190 0.84359 1.90820 1.68855 1.48815 1.31563 1.46174 1.08059 1.74251 1.07774 1.21234 0.77722 0.96919 1.00152 0.89429 1.22211 1.02056 0.96367 1.01453 1.21332 0.97737 0.96481 0.94668 1.22039 0.97861 0.95689 1.00846 1.20884 0.86258 0.98056 0.92855 1.44033 0.99366 1.05656 1.82388 1.19137 1.00406 0.86962 1.31680 0.91831 1.25033 1.00124 0.97311 0.97160 1.70015 1.22500 1.27372 1.34927 0.86380 0.80804 0.81980 0.77677 1.20905 1.21646 1.21007 1.20761 0.99134 0.85367 0.90127 1.22272 0.92815 0.99994 1.02259 1.19017 0.86321 0.84550 0.92355 1.84764 1.76548 1.32530 1.34122 1.67059 1.09148 1.30418 1.16000 0.89812 0.90066 0.90215 0.83818 0.89604 0.90119 0.90587 0.76749 0.92762 0.90800 0.92610 0.91506 0.92181 0.93677 0.96750 0.92943 0.93606 0.96538 0.89461 0.92779 0.92451 0.73513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.16 36.01 0.37 -0.22 16 2 C 0.17 1.51 6.78 -82.53 -0.56 0.95 16 3 C -0.19 -1.46 9.41 -39.50 -0.37 -1.83 16 4 C 0.01 0.10 5.95 -103.93 -0.62 -0.52 16 5 C -0.12 -0.92 9.69 36.01 0.35 -0.57 16 6 C -0.20 -2.40 5.66 -104.69 -0.59 -2.99 16 7 C 0.57 7.77 5.38 -12.47 -0.07 7.70 16 8 O -0.53 -9.29 16.77 5.29 0.09 -9.20 16 9 N -0.71 -8.25 4.36 -54.85 -0.24 -8.49 16 10 C 0.14 1.92 2.16 -67.93 -0.15 1.77 16 11 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 12 C -0.16 -1.97 9.13 37.16 0.34 -1.63 16 13 C -0.08 -1.24 1.79 -90.58 -0.16 -1.41 16 14 C -0.13 -2.00 5.22 -26.61 -0.14 -2.14 16 15 C 0.15 2.91 6.52 -3.71 -0.02 2.89 16 16 N -0.59 -14.42 2.99 -172.31 -0.52 -14.94 16 17 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 18 H 0.06 1.71 7.88 -52.49 -0.41 1.29 16 19 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 20 N -0.90 -25.91 11.19 55.49 0.62 -25.29 16 21 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.17 3.94 5.30 -3.71 -0.02 3.92 16 26 C -0.13 -2.38 5.04 -26.61 -0.13 -2.52 16 27 C 0.36 4.45 7.77 -16.61 -0.13 4.32 16 28 O -0.47 -5.85 13.01 -17.98 -0.23 -6.08 16 29 N -0.51 -5.99 10.28 -9.21 -0.09 -6.08 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 33 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.40 8.10 -51.92 -0.42 -0.03 16 36 H 0.08 0.63 7.18 -51.93 -0.37 0.26 16 37 H 0.40 3.81 8.37 -40.82 -0.34 3.47 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.90 6.40 -51.93 -0.33 0.57 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.04 0.59 7.41 -51.93 -0.38 0.20 16 44 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.05 1.04 7.93 -51.92 -0.41 0.63 16 46 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 2.27 6.07 -51.93 -0.31 1.96 16 49 H 0.05 0.86 6.36 -51.93 -0.33 0.53 16 50 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 51 H 0.41 3.22 9.06 45.56 0.41 3.63 16 LS Contribution 408.17 15.07 6.15 6.15 Total: -1.00 -34.33 408.17 -8.90 -43.23 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.51 Total: 3.39 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.14 Total: 0.70 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.23 Total: -54.80 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.15 Total: -15.28 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.33 -8.90 -43.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997247629.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.728 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds