Wall clock time and date at job start Wed Apr 1 2020 04:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38353 * 119.40671 * 2 1 4 4 C 1.38336 * 119.45737 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.82470 * 180.02562 * 4 3 2 6 6 C 1.39984 * 118.34853 * 0.27042 * 4 3 2 7 7 C 1.47526 * 120.59731 * 179.70741 * 6 4 3 8 8 O 1.21587 * 120.00271 * 89.99401 * 7 6 4 9 9 N 1.34779 * 120.00126 * 270.00265 * 7 6 4 10 10 C 1.46495 * 120.00357 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47122 * 34.99467 * 10 9 7 12 12 C 1.52999 * 109.47214 * 274.99575 * 10 9 7 13 13 C 1.53001 * 109.47279 * 154.99439 * 10 9 7 14 14 C 1.53039 * 109.45908 * 300.02984 * 13 10 9 15 15 C 1.53194 * 109.30733 * 178.59929 * 14 13 10 16 16 N 1.46923 * 108.76828 * 54.66036 * 15 14 13 17 17 C 1.36935 * 120.63751 * 126.40385 * 16 15 14 18 18 H 1.07997 * 119.99559 * 331.81878 * 17 16 15 19 19 C 1.38813 * 120.00236 * 151.82025 * 17 16 15 20 20 N 1.31617 * 120.00034 * 343.07970 * 19 17 16 21 21 Si 1.86795 * 120.00010 * 163.07750 * 19 17 16 22 22 H 1.48503 * 109.46865 * 59.99941 * 21 19 17 23 23 H 1.48503 * 109.47366 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47426 * 300.00208 * 21 19 17 25 25 C 1.46934 * 118.73459 * 306.37855 * 16 15 14 26 26 C 1.53040 * 109.45877 * 179.97438 * 13 10 9 27 27 C 1.40282 * 118.80392 * 359.46336 * 6 4 3 28 28 O 1.35429 * 119.79836 * 180.24658 * 27 6 4 29 29 N 1.31875 * 119.40729 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46967 * 90.00155 * 1 2 3 31 31 H 1.08994 * 109.47238 * 210.00406 * 1 2 3 32 32 H 1.09001 * 109.46973 * 330.00443 * 1 2 3 33 33 H 1.08006 * 120.27401 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.47691 * 89.99722 * 5 4 3 35 35 H 1.09008 * 109.47536 * 329.99773 * 5 4 3 36 36 H 1.08997 * 109.47220 * 209.99949 * 5 4 3 37 37 H 0.97004 * 119.99457 * 359.97438 * 9 7 6 38 38 H 1.09006 * 109.46956 * 59.99710 * 12 10 9 39 39 H 1.08999 * 109.47113 * 179.97438 * 12 10 9 40 40 H 1.09000 * 109.46988 * 299.99974 * 12 10 9 41 41 H 1.09002 * 109.45876 * 60.00234 * 13 10 9 42 42 H 1.08995 * 109.49985 * 298.56165 * 14 13 10 43 43 H 1.08994 * 109.49994 * 58.66037 * 14 13 10 44 44 H 1.08996 * 109.60390 * 294.86442 * 15 14 13 45 45 H 1.09013 * 109.69923 * 174.50281 * 15 14 13 46 46 H 0.97000 * 120.00361 * 179.97438 * 20 19 17 47 47 H 1.09005 * 109.58396 * 293.82345 * 25 16 15 48 48 H 1.08999 * 109.70388 * 173.46981 * 25 16 15 49 49 H 1.09001 * 109.50183 * 301.33883 * 26 13 10 50 50 H 1.09001 * 109.49623 * 61.40548 * 26 13 10 51 51 H 0.96694 * 114.00076 * 270.30442 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0005 5 6 4.3408 2.5013 0.0011 6 6 4.2355 -0.0249 -0.0047 7 6 5.7097 -0.0814 -0.0109 8 8 6.3215 -0.1068 1.0395 9 7 6.3783 -0.1048 -1.1809 10 6 7.8422 -0.1604 -1.1871 11 1 8.1864 -0.7647 -0.3478 12 6 8.4069 1.2560 -1.0612 13 6 8.3233 -0.7866 -2.4976 14 6 7.7577 -2.2030 -2.6236 15 6 8.2128 -2.8137 -3.9528 16 7 9.6782 -2.7404 -4.0296 17 6 10.4208 -3.8630 -4.2814 18 1 10.0495 -4.8334 -3.9867 19 6 11.6509 -3.7538 -4.9153 20 7 11.9602 -2.6526 -5.5665 21 14 12.8673 -5.1696 -4.8441 22 1 12.2560 -6.3784 -5.4528 23 1 14.0957 -4.8052 -5.5949 24 1 13.2170 -5.4512 -3.4286 25 6 10.3317 -1.4394 -3.8317 26 6 9.8526 -0.8439 -2.5040 27 6 3.4757 -1.2041 0.0012 28 8 4.0991 -2.4064 0.0013 29 7 2.1546 -1.1488 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6411 2.1376 -0.0004 34 1 4.5263 2.8134 1.0289 35 1 3.7623 3.2691 -0.5128 36 1 5.2916 2.3583 -0.5123 37 1 5.8901 -0.0848 -2.0189 38 1 8.0641 1.7021 -0.1275 39 1 9.4961 1.2145 -1.0653 40 1 8.0627 1.8603 -1.9005 41 1 7.9790 -0.1821 -3.3368 42 1 8.1217 -2.8149 -1.7984 43 1 6.6688 -2.1639 -2.5953 44 1 7.7751 -2.2557 -4.7805 45 1 7.8958 -3.8554 -4.0063 46 1 12.8199 -2.5761 -6.0092 47 1 10.0667 -0.7692 -4.6495 48 1 11.4132 -1.5719 -3.8036 49 1 10.2550 0.1627 -2.3905 50 1 10.1967 -1.4683 -1.6794 51 1 4.2805 -2.7554 -0.8820 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997247629.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:14 Heat of formation + Delta-G solvation = -61.136374 kcal Electronic energy + Delta-G solvation = -31371.155842 eV Core-core repulsion = 27269.657990 eV Total energy + Delta-G solvation = -4101.497852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.08052 -40.66610 -39.33312 -38.45333 -36.82260 -35.30899 -34.47446 -33.03993 -32.63389 -31.41834 -30.66809 -29.22297 -28.42934 -27.15922 -25.12299 -24.23958 -23.66933 -22.93670 -21.92751 -21.54783 -20.74326 -19.53949 -19.00323 -18.51472 -18.24112 -17.39326 -16.86486 -16.65576 -16.03974 -15.69976 -15.56729 -15.31831 -15.17522 -14.87900 -14.79725 -14.74728 -14.37965 -14.21741 -14.04463 -14.02178 -13.92501 -13.51918 -13.40030 -13.23920 -12.98956 -12.90767 -12.80220 -12.75178 -12.62997 -12.61572 -12.41250 -12.17924 -12.03308 -11.79405 -11.51522 -11.46460 -11.10902 -11.09753 -10.62123 -10.53449 -10.49008 -10.14190 -9.85445 -8.65776 -7.87356 -5.31823 -0.29256 0.03841 1.41038 1.45329 1.47818 1.54272 2.02756 2.36457 2.50883 2.54621 3.26653 3.42069 3.55711 3.61713 3.70133 3.76925 3.93888 4.00027 4.06338 4.20518 4.29626 4.40588 4.46261 4.51476 4.56053 4.59110 4.59944 4.65598 4.73657 4.79947 4.82211 4.90441 4.96091 4.98074 5.02259 5.04473 5.09586 5.14951 5.17341 5.19977 5.28084 5.36206 5.44404 5.47828 5.52645 5.55931 5.66284 5.80870 6.39259 6.40322 6.46509 6.81418 7.10207 7.16464 7.88890 8.38977 9.18349 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.002412 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.812774 B =11606.348386 C =12394.737638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.160 3.840 3 C -0.176 4.176 4 C 0.008 3.992 5 C -0.123 4.123 6 C -0.221 4.221 7 C 0.583 3.417 8 O -0.573 6.573 9 N -0.697 5.697 10 C 0.155 3.845 11 H 0.062 0.938 12 C -0.158 4.158 13 C -0.072 4.072 14 C -0.113 4.113 15 C 0.142 3.858 16 N -0.612 5.612 17 C -0.263 4.263 18 H 0.061 0.939 19 C -0.049 4.049 20 N -0.932 5.932 21 Si 0.962 3.038 22 H -0.276 1.276 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.177 3.823 26 C -0.121 4.121 27 C 0.339 3.661 28 O -0.493 6.493 29 N -0.532 5.532 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.184 0.816 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.412 0.588 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.042 0.958 43 H 0.081 0.919 44 H 0.020 0.980 45 H 0.048 0.952 46 H 0.250 0.750 47 H 0.002 0.998 48 H 0.050 0.950 49 H 0.077 0.923 50 H 0.042 0.958 51 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.218 14.259 8.787 28.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.022 3.978 3 C -0.195 4.195 4 C 0.000 4.000 5 C -0.179 4.179 6 C -0.228 4.228 7 C 0.368 3.632 8 O -0.452 6.452 9 N -0.348 5.348 10 C 0.051 3.949 11 H 0.080 0.920 12 C -0.216 4.216 13 C -0.091 4.091 14 C -0.152 4.152 15 C 0.017 3.983 16 N -0.336 5.336 17 C -0.393 4.393 18 H 0.079 0.921 19 C -0.245 4.245 20 N -0.578 5.578 21 Si 0.791 3.209 22 H -0.202 1.202 23 H -0.219 1.219 24 H -0.208 1.208 25 C 0.052 3.948 26 C -0.161 4.161 27 C 0.160 3.840 28 O -0.303 6.303 29 N -0.253 5.253 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.201 0.799 34 H 0.103 0.897 35 H 0.130 0.870 36 H 0.084 0.916 37 H 0.249 0.751 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.038 0.962 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.020 0.980 48 H 0.068 0.932 49 H 0.096 0.904 50 H 0.061 0.939 51 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -23.057 13.491 10.008 28.526 hybrid contribution 1.619 -0.696 -0.961 2.007 sum -21.437 12.795 9.047 26.554 Atomic orbital electron populations 1.20933 0.85654 1.04882 1.04754 1.21891 0.98657 0.86819 0.90396 1.22176 0.92937 1.00757 1.03643 1.20590 0.94644 0.93921 0.90811 1.21009 1.00001 0.92864 1.04020 1.20814 0.93833 0.95165 1.13017 1.17959 0.86548 0.74879 0.83771 1.90794 1.70028 1.51146 1.33247 1.45980 1.07275 1.73379 1.08131 1.20928 0.78760 0.97359 0.97880 0.92012 1.22159 1.01915 0.95365 1.02121 1.21185 0.95516 0.96225 0.96133 1.21891 0.99988 0.95641 0.97684 1.21046 0.83845 0.98422 0.95018 1.44318 1.01227 1.05359 1.82661 1.19434 1.01070 0.87891 1.30953 0.92115 1.25733 1.01696 0.99646 0.97387 1.70154 1.22567 1.29082 1.36020 0.85419 0.78537 0.79482 0.77489 1.20169 1.21852 1.20781 1.20584 0.97097 0.84957 0.92178 1.22068 0.95054 1.00472 0.98493 1.19158 0.86830 0.84510 0.93478 1.84720 1.76820 1.33106 1.35622 1.67103 1.08890 1.32148 1.17195 0.88334 0.90983 0.87435 0.79856 0.89742 0.86967 0.91631 0.75142 0.93084 0.90899 0.90685 0.90018 0.93938 0.90074 0.96230 0.93366 0.94100 0.98042 0.93181 0.90432 0.93882 0.72039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.16 71.24 0.72 -0.10 16 2 C 0.16 2.47 6.78 42.58 0.29 2.76 16 3 C -0.18 -2.10 9.41 22.32 0.21 -1.89 16 4 C 0.01 0.13 5.95 -19.42 -0.12 0.02 16 5 C -0.12 -1.45 9.69 71.24 0.69 -0.76 16 6 C -0.22 -5.02 5.66 -19.91 -0.11 -5.13 16 7 C 0.58 15.38 5.38 86.69 0.47 15.84 16 8 O -0.57 -20.48 16.77 -3.99 -0.07 -20.54 16 9 N -0.70 -15.09 4.36 -445.72 -1.94 -17.03 16 10 C 0.16 3.96 2.16 44.99 0.10 4.05 16 11 H 0.06 1.96 7.58 -2.39 -0.02 1.94 16 12 C -0.16 -3.52 9.13 71.98 0.66 -2.86 16 13 C -0.07 -2.04 1.79 -10.77 -0.02 -2.06 16 14 C -0.11 -3.50 5.22 30.67 0.16 -3.34 16 15 C 0.14 5.61 6.52 86.36 0.56 6.18 16 16 N -0.61 -30.34 2.99 -699.06 -2.09 -32.43 16 17 C -0.26 -14.58 9.58 84.03 0.81 -13.77 16 18 H 0.06 3.32 7.88 -2.91 -0.02 3.30 16 19 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 20 N -0.93 -54.93 11.19 21.65 0.24 -54.68 16 21 Si 0.96 45.33 29.59 68.60 2.03 47.36 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 25 C 0.18 8.31 5.30 86.36 0.46 8.77 16 26 C -0.12 -4.30 5.04 30.67 0.15 -4.14 16 27 C 0.34 8.30 7.77 85.13 0.66 8.96 16 28 O -0.49 -12.34 13.01 -87.25 -1.14 -13.48 16 29 N -0.53 -12.07 10.28 -296.06 -3.04 -15.11 16 30 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.11 0.25 8.07 -2.39 -0.02 0.24 16 33 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.11 0.60 8.10 -2.38 -0.02 0.58 16 36 H 0.06 0.93 7.18 -2.39 -0.02 0.91 16 37 H 0.41 6.85 8.37 -92.71 -0.78 6.07 16 38 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.07 1.65 6.40 -2.39 -0.02 1.63 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.08 1.93 7.41 -2.39 -0.02 1.92 16 44 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.05 1.91 7.93 -2.38 -0.02 1.89 16 46 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 47 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 48 H 0.05 2.71 6.07 -2.39 -0.01 2.69 16 49 H 0.08 2.37 6.36 -2.39 -0.02 2.36 16 50 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.42 6.68 9.06 -74.06 -0.67 6.01 16 Total: -1.00 -78.05 408.17 -0.40 -78.45 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -0.49 Total: 17.30 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 6.11 Total: 10.17 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -6.84 Total: -119.25 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.20 Total: -34.02 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -78.05 -0.40 -78.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997247629.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.309 kcal (2) G-P(sol) polarization free energy of solvation -78.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds