Wall clock time and date at job start Wed Apr 1 2020 04:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37995 * 120.81876 * 2 1 4 4 C 1.39128 * 119.26607 * 179.73125 * 3 2 1 5 5 O 1.35499 * 119.52600 * 180.25201 * 4 3 2 6 6 N 1.32439 * 120.94999 * 0.55695 * 4 3 2 7 7 C 1.31643 * 121.79247 * 359.71565 * 6 4 3 8 8 C 1.50703 * 119.67866 * 180.02562 * 7 6 4 9 9 C 1.39552 * 120.63156 * 0.02562 * 7 6 4 10 10 C 1.47621 * 120.50294 * 179.97438 * 9 7 6 11 11 O 1.21574 * 120.00226 * 270.02834 * 10 9 7 12 12 N 1.34782 * 119.99112 * 90.02359 * 10 9 7 13 13 C 1.46501 * 119.99346 * 180.02562 * 12 10 9 14 14 H 1.09008 * 109.47512 * 35.00098 * 13 12 10 15 15 C 1.53003 * 109.47283 * 274.99948 * 13 12 10 16 16 C 1.52998 * 109.46931 * 155.00151 * 13 12 10 17 17 C 1.53047 * 109.46008 * 300.02485 * 16 13 12 18 18 C 1.53197 * 109.31104 * 178.60374 * 17 16 13 19 19 N 1.46924 * 108.76674 * 54.65559 * 18 17 16 20 20 C 1.36934 * 120.62734 * 126.40675 * 19 18 17 21 21 H 1.07999 * 120.00276 * 331.82234 * 20 19 18 22 22 C 1.38816 * 119.99762 * 151.82474 * 20 19 18 23 23 N 1.31622 * 120.00025 * 343.07648 * 22 20 19 24 24 Si 1.86797 * 119.99930 * 163.07958 * 22 20 19 25 25 H 1.48498 * 109.47295 * 59.99791 * 24 22 20 26 26 H 1.48500 * 109.46975 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46815 * 299.99531 * 24 22 20 28 28 C 1.46924 * 118.73795 * 306.38234 * 19 18 17 29 29 C 1.53046 * 109.45985 * 179.97438 * 16 13 12 30 30 H 1.09005 * 109.47298 * 269.71709 * 1 2 3 31 31 H 1.09000 * 109.47079 * 149.72459 * 1 2 3 32 32 H 1.08998 * 109.47634 * 29.72051 * 1 2 3 33 33 H 1.08002 * 120.36872 * 359.97438 * 3 2 1 34 34 H 0.96703 * 114.00333 * 270.29314 * 5 4 3 35 35 H 1.08999 * 109.47431 * 269.97890 * 8 7 6 36 36 H 1.08993 * 109.47477 * 29.98610 * 8 7 6 37 37 H 1.09005 * 109.46856 * 149.98369 * 8 7 6 38 38 H 0.96996 * 120.00697 * 0.02562 * 12 10 9 39 39 H 1.08997 * 109.46994 * 60.00062 * 15 13 12 40 40 H 1.08996 * 109.47408 * 179.97438 * 15 13 12 41 41 H 1.09002 * 109.46609 * 300.00245 * 15 13 12 42 42 H 1.08996 * 109.46051 * 60.00177 * 16 13 12 43 43 H 1.09003 * 109.49431 * 298.56708 * 17 16 13 44 44 H 1.09000 * 109.49602 * 58.66679 * 17 16 13 45 45 H 1.09002 * 109.59127 * 294.86578 * 18 17 16 46 46 H 1.09001 * 109.69738 * 174.51054 * 18 17 16 47 47 H 0.96997 * 119.99826 * 180.02562 * 23 22 20 48 48 H 1.08996 * 109.58642 * 293.82325 * 28 19 18 49 49 H 1.08996 * 109.70502 * 173.46492 * 28 19 18 50 50 H 1.09002 * 109.49410 * 301.33723 * 29 16 13 51 51 H 1.08998 * 109.49903 * 61.40028 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2139 1.1851 0.0000 4 6 3.6047 1.1474 0.0057 5 8 4.3041 2.3079 0.0109 6 7 4.2548 -0.0064 0.0000 7 6 3.6204 -1.1599 -0.0056 8 6 4.4082 -2.4447 -0.0113 9 6 2.2256 -1.2043 -0.0063 10 6 1.5172 -2.4994 -0.0131 11 8 1.2263 -3.0276 -1.0688 12 7 1.1930 -3.0962 1.1511 13 6 0.4904 -4.3817 1.1443 14 1 0.8342 -4.9793 0.2999 15 6 -1.0150 -4.1395 1.0184 16 6 0.7796 -5.1278 2.4484 17 6 2.2857 -5.3694 2.5744 18 6 2.5749 -6.0854 3.8974 19 7 1.7607 -7.3067 3.9618 20 6 2.3437 -8.5220 4.2032 21 1 3.3677 -8.6978 3.9084 22 6 1.6185 -9.5281 4.8268 23 7 0.5135 -9.2352 5.4792 24 14 2.2110 -11.2975 4.7402 25 1 3.5613 -11.3978 5.3499 26 1 1.2667 -12.1724 5.4804 27 1 2.2755 -11.7289 3.3207 28 6 0.3090 -7.1992 3.7628 29 6 0.0451 -6.4704 2.4414 30 1 -0.3634 -0.0051 1.0277 31 1 -0.3633 -0.8875 -0.5181 32 1 -0.3634 0.8924 -0.5095 33 1 1.6934 2.1314 -0.0004 34 1 4.5070 2.6489 -0.8710 35 1 4.5981 -2.7499 -1.0403 36 1 5.3567 -2.2917 0.5034 37 1 3.8392 -3.2219 0.4990 38 1 1.4249 -2.6746 1.9933 39 1 -1.2211 -3.6080 0.0894 40 1 -1.5377 -5.0960 1.0130 41 1 -1.3587 -3.5420 1.8628 42 1 0.4358 -4.5301 3.2926 43 1 2.6256 -5.9880 1.7438 44 1 2.8102 -4.4140 2.5557 45 1 2.3189 -5.4311 4.7308 46 1 3.6317 -6.3475 3.9500 47 1 0.0070 -9.9382 5.9152 48 1 -0.1318 -6.6358 4.5852 49 1 -0.1316 -8.1954 3.7249 50 1 -1.0254 -6.2988 2.3280 51 1 0.4060 -7.0783 1.6117 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997431649.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:05 Heat of formation + Delta-G solvation = -60.536865 kcal Electronic energy + Delta-G solvation = -31385.754303 eV Core-core repulsion = 27284.282447 eV Total energy + Delta-G solvation = -4101.471855 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.08471 -40.73203 -39.40334 -38.16112 -36.78071 -35.37590 -34.51145 -33.30285 -32.44483 -31.39079 -30.47856 -29.07139 -28.74333 -27.14622 -25.33682 -24.25416 -23.63724 -22.42034 -22.18636 -21.56609 -20.74857 -19.49076 -18.95292 -18.47561 -18.28631 -17.34742 -16.82532 -16.70132 -16.04225 -15.70679 -15.43493 -15.30030 -15.23886 -14.86161 -14.75632 -14.73215 -14.33450 -14.29731 -14.20911 -14.00196 -13.89791 -13.48835 -13.42968 -13.28887 -13.12068 -12.93418 -12.89001 -12.73191 -12.63450 -12.59448 -12.38638 -12.16003 -12.01867 -11.77493 -11.47852 -11.38364 -11.07401 -11.05072 -10.64519 -10.53793 -10.50311 -10.10940 -9.89176 -8.64430 -7.86087 -5.30575 -0.33450 0.04436 1.43300 1.46499 1.48854 1.55307 2.06314 2.28680 2.52059 2.62802 3.27966 3.37161 3.45346 3.59692 3.71402 3.78217 3.94611 3.99965 4.09032 4.18479 4.28548 4.39286 4.43694 4.49233 4.53845 4.56852 4.58361 4.61958 4.65700 4.75977 4.80539 4.84325 4.92990 4.97483 5.01075 5.05733 5.09740 5.10364 5.16033 5.20618 5.30848 5.38313 5.40635 5.47292 5.50423 5.57578 5.67830 5.82689 6.41401 6.45095 6.54644 6.79724 7.11312 7.17762 7.90193 8.40439 9.19657 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018957 B = 0.002398 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.652865 B =11671.911742 C =12457.235852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.012 3.988 3 C -0.189 4.189 4 C 0.327 3.673 5 O -0.488 6.488 6 N -0.532 5.532 7 C 0.186 3.814 8 C -0.113 4.113 9 C -0.208 4.208 10 C 0.583 3.417 11 O -0.568 6.568 12 N -0.699 5.699 13 C 0.155 3.845 14 H 0.068 0.932 15 C -0.158 4.158 16 C -0.073 4.073 17 C -0.114 4.114 18 C 0.141 3.859 19 N -0.611 5.611 20 C -0.263 4.263 21 H 0.062 0.938 22 C -0.049 4.049 23 N -0.933 5.933 24 Si 0.963 3.037 25 H -0.276 1.276 26 H -0.293 1.293 27 H -0.280 1.280 28 C 0.177 3.823 29 C -0.120 4.120 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.177 0.823 34 H 0.424 0.576 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.411 0.589 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.046 0.954 44 H 0.078 0.922 45 H 0.017 0.983 46 H 0.047 0.953 47 H 0.250 0.750 48 H -0.001 1.001 49 H 0.050 0.950 50 H 0.077 0.923 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.256 24.126 -12.387 27.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.004 3.996 3 C -0.209 4.209 4 C 0.148 3.852 5 O -0.299 6.299 6 N -0.253 5.253 7 C 0.048 3.952 8 C -0.170 4.170 9 C -0.213 4.213 10 C 0.368 3.632 11 O -0.447 6.447 12 N -0.350 5.350 13 C 0.051 3.949 14 H 0.087 0.913 15 C -0.216 4.216 16 C -0.092 4.092 17 C -0.153 4.153 18 C 0.016 3.984 19 N -0.335 5.335 20 C -0.393 4.393 21 H 0.080 0.920 22 C -0.245 4.245 23 N -0.579 5.579 24 Si 0.791 3.209 25 H -0.202 1.202 26 H -0.219 1.219 27 H -0.206 1.206 28 C 0.051 3.949 29 C -0.160 4.160 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.194 0.806 34 H 0.286 0.714 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.248 0.752 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.059 0.941 48 H 0.017 0.983 49 H 0.069 0.931 50 H 0.095 0.905 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.318 23.665 -12.442 26.738 hybrid contribution -0.257 -1.027 0.169 1.072 sum 0.061 22.638 -12.272 25.751 Atomic orbital electron populations 1.21009 0.87736 1.04520 1.04649 1.20486 0.98056 0.90410 0.90602 1.22128 0.93094 1.00251 1.05468 1.19532 0.87881 0.85033 0.92705 1.84678 1.75902 1.33149 1.36134 1.67004 1.42681 0.98484 1.17125 1.21153 0.89441 0.93435 0.91200 1.20888 1.00787 0.91180 1.04132 1.20668 0.94847 0.94429 1.11354 1.17934 0.77529 0.83883 0.83835 1.90805 1.55795 1.65856 1.32249 1.46052 1.58178 1.22337 1.08385 1.20943 0.92705 0.83280 0.97947 0.91331 1.22155 0.94364 1.02899 1.02141 1.21194 0.95779 0.95864 0.96361 1.21900 0.95750 0.99839 0.97765 1.21041 0.94551 0.87682 0.95118 1.44316 1.03505 1.02837 1.82838 1.19446 0.98195 0.90356 1.31304 0.92039 1.25742 0.98834 1.02494 0.97426 1.70162 1.19159 1.32334 1.36265 0.85412 0.77450 0.80464 0.77560 1.20222 1.21936 1.20640 1.20586 0.83745 0.98245 0.92293 1.22057 0.99866 0.95572 0.98476 0.88122 0.92075 0.87879 0.80584 0.71384 0.89456 0.88937 0.90435 0.75241 0.92868 0.90920 0.90980 0.90343 0.93472 0.90310 0.96543 0.93412 0.94127 0.98272 0.93148 0.90457 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 9.69 71.23 0.69 -0.75 16 2 C 0.01 0.20 5.95 -19.44 -0.12 0.09 16 3 C -0.19 -2.63 9.72 22.43 0.22 -2.41 16 4 C 0.33 5.87 7.74 84.82 0.66 6.53 16 5 O -0.49 -6.83 13.55 -88.00 -1.19 -8.02 16 6 N -0.53 -12.02 10.29 -295.89 -3.04 -15.06 16 7 C 0.19 4.13 6.82 42.91 0.29 4.42 16 8 C -0.11 -2.29 9.78 71.24 0.70 -1.59 16 9 C -0.21 -4.37 5.65 -20.00 -0.11 -4.48 16 10 C 0.58 13.87 4.29 86.72 0.37 14.24 16 11 O -0.57 -17.88 16.77 -3.95 -0.07 -17.94 16 12 N -0.70 -14.44 4.36 -445.60 -1.94 -16.38 16 13 C 0.16 3.75 2.16 44.99 0.10 3.84 16 14 H 0.07 1.99 7.58 -2.38 -0.02 1.97 16 15 C -0.16 -3.34 9.13 71.98 0.66 -2.69 16 16 C -0.07 -2.04 1.79 -10.76 -0.02 -2.06 16 17 C -0.11 -3.49 5.22 30.68 0.16 -3.33 16 18 C 0.14 5.63 6.52 86.36 0.56 6.19 16 19 N -0.61 -30.20 2.99 -699.10 -2.09 -32.29 16 20 C -0.26 -14.48 9.58 84.03 0.81 -13.68 16 21 H 0.06 3.34 7.88 -2.91 -0.02 3.31 16 22 C -0.05 -2.77 4.92 84.86 0.42 -2.35 16 23 N -0.93 -54.93 11.19 21.65 0.24 -54.69 16 24 Si 0.96 45.08 29.59 68.60 2.03 47.11 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 27 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 28 C 0.18 8.24 5.30 86.36 0.46 8.70 16 29 C -0.12 -4.17 5.04 30.67 0.15 -4.02 16 30 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.06 0.97 7.18 -2.39 -0.02 0.95 16 32 H 0.10 0.72 8.10 -2.39 -0.02 0.70 16 33 H 0.18 1.30 8.06 -2.91 -0.02 1.27 16 34 H 0.42 1.54 9.06 -74.06 -0.67 0.87 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.08 1.60 7.07 -2.38 -0.02 1.59 16 38 H 0.41 6.96 8.37 -92.71 -0.78 6.18 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.56 6.40 -2.39 -0.02 1.55 16 41 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.08 1.94 7.41 -2.39 -0.02 1.92 16 45 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 47 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 48 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 49 H 0.05 2.71 6.07 -2.39 -0.01 2.69 16 50 H 0.08 2.32 6.36 -2.39 -0.02 2.30 16 51 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -73.67 406.54 -0.56 -74.23 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -0.49 Total: 16.38 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 5.99 Total: 6.66 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -6.84 Total: -118.42 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -1.26 Total: -25.97 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -73.67 -0.56 -74.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997431649.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.696 kcal (2) G-P(sol) polarization free energy of solvation -73.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds